mRNA_H-elongata_contig12902.2134.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12902.2134.1
Unique NamemRNA_H-elongata_contig12902.2134.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12902.2134.1 vs. uniprot
Match: D7FZ16_ECTSI (MRG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ16_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 3.460e-49
Identity = 91/129 (70.54%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:   16 EPGKSASAAPPSRLALSLKTAQAVPVNVEVQLTPQAIRRAGSMAYDYVPGQYYAVSPYAEDGLVSRCGKNGRDVTITFEIRDMTSGGEGVRLSAVVCKRAQKLQYYFFKAVEFLLPGKFLFNFFVNSTK 402
            EPGKSAS APP RLALS KTAQAV V+ EV L P+ I R+GS AY +  G+YYAV+PYAEDG+VSRCGK+G++V + FEIRDMT+GGEGV LSA  CK+ QK QYYFF+AVEFLLPGKFLF F   STK
Sbjct:    9 EPGKSASIAPPQRLALSDKTAQAVFVDTEVLLEPEVIGRSGSDAYGWARGKYYAVAPYAEDGVVSRCGKDGKEVAVRFEIRDMTAGGEGVHLSATECKKVQKSQYYFFQAVEFLLPGKFLFIFSAKSTK 137
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BLAST of mRNA_H-elongata_contig12902.2134.1 vs. uniprot
Match: A0A6H5KRJ0_9PHAE (MRG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ0_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 3.460e-49
Identity = 91/129 (70.54%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:   16 EPGKSASAAPPSRLALSLKTAQAVPVNVEVQLTPQAIRRAGSMAYDYVPGQYYAVSPYAEDGLVSRCGKNGRDVTITFEIRDMTSGGEGVRLSAVVCKRAQKLQYYFFKAVEFLLPGKFLFNFFVNSTK 402
            EPGKSAS APP RLALS KTAQAV V+ EV L P+ I R+GS AY +  G+YYAV+PYAEDG+VSRCGK+G++V + FEIRDMT+GGEGV LSA  CK+ QK QYYFF+AVEFLLPGKFLF F   STK
Sbjct:    9 EPGKSASIAPPKRLALSDKTAQAVFVDTEVLLEPEVIGRSGSDAYGWARGKYYAVAPYAEDGVVSRCGKDGKEVAVRFEIRDMTAGGEGVHLSATECKKVQKSQYYFFQAVEFLLPGKFLFIFSAKSTK 137
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BLAST of mRNA_H-elongata_contig12902.2134.1 vs. uniprot
Match: A0A836CCU0_9STRA (MRG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCU0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.850e-7
Identity = 41/110 (37.27%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:   79 QAVPVNVEVQLTPQAIRRAGSMAYDYVPGQYYAVSPYAEDGLVSRCGKNGRDVTITFEIRDMTSGGEGVRLSAVV--CKRAQKLQYYFFKAVEFLLPGKFLFNFFVNSTK 402
            +A PV +     P+ I R     +   P  YYA++ YAEDG+VSR G+  R     F I    + GE VRL+ V       Q +QYYFF    FL  G++L  F   S K
Sbjct:   14 KAPPVQLTKAPDPEEIHR---FIFPEKPKLYYAIAVYAEDGVVSRTGREVRVQMSVFNI----ARGEEVRLTGVTDHISSVQVVQYYFFAPPVFLWAGQYLLKFTAISKK 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12902.2134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZ16_ECTSI3.460e-4970.54MRG domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRJ0_9PHAE3.460e-4970.54MRG domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CCU0_9STRA8.850e-737.27MRG domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12902contigH-elongata_contig12902:1612..7638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size405
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12902.2134.1prot_H-elongata_contig12902.2134.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12902 1612..7638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.3081295-CDS-H-elongata_contig12902:1611..17131622929767.3081295-CDS-H-elongata_contig12902:1611..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12902 1612..1713 +
1691679149.8399143-CDS-H-elongata_contig12902:1611..17131691679149.8399143-CDS-H-elongata_contig12902:1611..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12902 1612..1713 +
1622929767.3223305-CDS-H-elongata_contig12902:4908..50281622929767.3223305-CDS-H-elongata_contig12902:4908..5028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12902 4909..5028 +
1691679149.8493237-CDS-H-elongata_contig12902:4908..50281691679149.8493237-CDS-H-elongata_contig12902:4908..5028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12902 4909..5028 +
1622929767.335412-CDS-H-elongata_contig12902:6784..68741622929767.335412-CDS-H-elongata_contig12902:6784..6874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12902 6785..6874 +
1691679149.8579159-CDS-H-elongata_contig12902:6784..68741691679149.8579159-CDS-H-elongata_contig12902:6784..6874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12902 6785..6874 +
1622929767.3564305-CDS-H-elongata_contig12902:7545..76381622929767.3564305-CDS-H-elongata_contig12902:7545..7638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12902 7546..7638 +
1691679149.8719213-CDS-H-elongata_contig12902:7545..76381691679149.8719213-CDS-H-elongata_contig12902:7545..7638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12902 7546..7638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12902.2134.1

>prot_H-elongata_contig12902.2134.1 ID=prot_H-elongata_contig12902.2134.1|Name=mRNA_H-elongata_contig12902.2134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MANKAEPGKSASAAPPSRLALSLKTAQAVPVNVEVQLTPQAIRRAGSMAY
DYVPGQYYAVSPYAEDGLVSRCGKNGRDVTITFEIRDMTSGGEGVRLSAV
VCKRAQKLQYYFFKAVEFLLPGKFLFNFFVNSTK*
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mRNA from alignment at H-elongata_contig12902:1612..7638+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12902.2134.1 ID=mRNA_H-elongata_contig12902.2134.1|Name=mRNA_H-elongata_contig12902.2134.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6027bp|location=Sequence derived from alignment at H-elongata_contig12902:1612..7638+ (Himanthalia elongata Himel1 dioecious)
ATGGCCAACAAGGCAGAGCCTGGAAAGTCTGCATCAGCGGCTCCGCCCAG
TAGGCTAGCACTGAGCCTTAAGACTGCGCAAGCGGTGCCCGTTAATGTAG
AGGTGAGCTCTCCAGTTGATCGAGATCGAGAGAGCAATCGATGCGCTACT
GACCGAGCTCAAACAACATGCCGCTGTGCGTGATTCTTCCGGTTTGTTGC
GAAGAGCGCCGGACGCTGATCAGCAATAACATTTCCGAAGTTTATCGAGG
TGTTGCTGGATGTAGAATGTGAGGCTCTGTTAGCTGCTAGCTGTTAGCTA
TAGGTACGTTGTGTTGTCATTAGATATACCTCGTACTATTAATAGTAAGA
TATAACAGTTTGCATCACCTGGATATGGTTGTCAACCCTAACCCGTGGTC
ACCTGAACAGGGAAAATTCTTTTTCTTGCATTAGACCGCGCAAACCGGCA
TTACATGTGTAAGGGGGCGCCACACCGGTTTGCAAATACCCCCAGTATGG
GGAACATGGATTTAACTAGCCCGCAGGCCCGGTATGCGGCCCCCCGCGTG
CGGGCCGCTATCGGAAAATTTTTGGGGTATATGCCTTAATGTAGCCATTG
ACAATAGACAAGAACAGCACAACAACAGCAGAAAAGCGAGAAGAAAGATA
ACACAACGCCCTATTTTAATCCCTGATGTGGAATTATCCCTGAAGACGTT
TGATTGGCCTATCCTAATCGCGTTGTTTACGCATCCGCTCCGGACTACCG
CTGCAAATCTCCCTCCTGCCACTGCTGCTCCACCCCTTTGCGCAATATTC
CGTGGCTTTGGCGTTTCGAATGCCACCACGTCCCCACCCGCCCTCTATCC
CCAGCGCGGTTGAGGCCTCCGATCTGGCGGATTCTCGTTACTCGCCGGAC
GGCCACCATCGCTACCGTTGTTACCAGCGCCGCCGCATTCGCCACTATGG
CAGCGGGTGCTCGCGCCTTGATCTCTCCCGCTCCCTCACTCAGCGCTACA
GCGTCGGCGACCGGTGTACCCCCCCCCCCTCCCTCAATCACTACAACATA
TGTCTTCGCGACCTCGGCCGCTTGCGCCGGCATCGTGGTCGCTGCGCCTG
TGCCAGCCCCGGTATGCCCCATCGTCATTTCCACTGATCGTTTTTCTGCT
TCAGGTGCGATCGGTTCCTCGCCTTCGGTCTATACCGGTGGCGCGAGGCA
CCCTTCAACTCCCTCCCCCGCCGCCGTAGCAGCCGCTACTGCAGACGACG
CGATATACCCTCGACCATGCGCATTTGCTTATCGCTAGGGCTAGACTGTC
CGCTGGCGCCGTGGCTGCTCGACCAATGGCTTGTGCCATAACTATGGTCT
GCAGGAAAGAAGAAACGAAAAACACAAACAGTGACAAACACAAGTTTGCT
TGTTTTTTAAAGAAAAAAGAAAAAACGGGGCACGATAAAGACATCTGTCT
ACCCAGGATGAGACAAACTGAGAAACACGATTTATCATGTGCGAGGATTT
TGTGCTCGAAGATAGTAATGTCCACATTCGAACCTTTGACGATAGTTGGT
CCCCTGGACTGCTCCCCTCACGATTCTACGAAAGCGTGGATGTTCGACGG
GTTGAAATGAGTTTATATGTTTTTTTAGAAAAATACGAAGGGCCTGGTGC
GACCCTACGAGGACTACCCTTCTTGCGATCGATCCATATTGGAATTTGCT
GGACTCTCGAGAGATTGAAATAATGTGTTTCTCACGCTTCAAATTTCGGG
CGACATGCTGGTTGATTGTGGTACACGACCCTCTATCGGCCTCTCTATGT
ATATGCCTCTATGGATATATACCTGGCACGTTATGTTATTTGTCTTTCTT
TCTTCCCTCTAGTTAGCAATACAGTAATCTGAAAAATGGTGCTATCGTCA
AACCCCCTCAAGTTTAGGCCATACGTTTCCAGAAAGGAAATTATGTTTTT
CTAATACAGTAGCTAGAACCCGAAATAAATCGAGATCATGTCCTGAATTT
AATTATTAATTATACTATTCAAAAGTAAACCAATTATCTGCCTAGTTCCT
ACGTTGATTTATAACGAAAATAAACATATCCCCCCTATGCCCAAGCCTAA
GCACTGTACCCTTGATCTATTAGTCATAGTCTGGATTTTGTTCTTAATTG
TAGTATTATAAATGAAAAAGTTGGTCCCCTGGACACCTCTCACGGTACTA
AGAAGGCGTGGATGCTCGGAGGGTTCTAATGAGTTAATATGTTTTAAATA
AGAACAATAATAGGAAATACAATGTTCAATTTTGTAACATAATAGAGAGA
TGGATAATGCCCCCAACGAAATATTAGACCCTTAACCCAAACATTTAATG
AGTAGTCTAGCCTAATAATTTACATCTACTGATTCAACATTATTAGCATA
GCATATTCTCTTTTGCTCAGTAATATATAAAATATGTACATCACGCGTTG
AAATTCGGGTGACATACCGACTGATTGTGGTCTATGACCCTCTAAAAGTG
CGACCAACACACAACACACAAACACACATAGCTATACTGCTTCATTTTTA
TATATTAAGGGAAAAGGGAATAGGCGCAATTGACATAACGTCGGATATTG
TTACGGTAGGCATAGGGATGGATATTGGATATTTGTAAAGTCTGGAACCT
TTCTAAAAAAATATACCAACTCATTCAAACTCTCCTAATGTTCACACGCC
TTGGAGACCAGATTCAGCTCTAAAACCAGTACCATATTTCAAAAATCCCT
CTATTTTCTCTACTTTTTGCAAATGTAACTCGAGAATTTCCAGAAAAAAA
GCGAAAAAATAAATAAATGATTCTTTCAGATAACAAGGCAAAAGTATTAG
TAGTTACATTACATGTTTCCCTTACAAATATATAGATGTTTACGTGTAAC
TCTATACGGCATATAGCTGAAGGGGTTTTGCAGTAATATAATAAACGCGT
AATAGAGGGGGGAAGAGGGGATCGAAAAGATTATCCCCGATCTCACCTCA
CGTTCGTTGCGCTCTGTAATCCGCGCTGCCATTTCTTGTCAATAAAAAGA
TGATATATCAGTCGTAGTATTAGTATGTAACAGTTCGTGCCTCGTTGGCC
GTGATGTTCTAATCGTAGCGTTGACGATTGACCACGCATTCCAACAGACG
ATTGACACCGCGATCTCGGGAGGATGAGTTTGTCTTTTTGTCGACATAAG
TTTAGGTTTGTTTGTTTTTTACACAAGAAAACGTAAGTCAATATCTTGTC
ACCCCCACCGACCCCCTCGATGTCTCCCCTCGTTTGACTCTTGGCAGGTG
CAACTTACCCCCCAAGCCATCAGACGGGCGGGATCTATGGCGTACGATTA
CGTGCCGGGACAATACTACGCGGTTTCCCCTTACGCTGAGGACGGGCTCG
TTTCGAGATGCGGGAAGGTCAGTACAGTAATCGATCTTTCGCCCTCCTTT
TACCAGATCCTTTCAAATTCCGTTTGGTACCGATATATGTTTAGTTTCAT
TTTCAAATATTTCTACATACAATTTAGAAGAGTAGTAGGGAGAGACTATT
GATATATGTTTTTGTTATTTTTAACCTACGAATACGAGAGTAATAAGGGG
AGGCTTTTCCCCCTCGGGGGTCGTTGTCTCGGCGCTCTGTATGCGATATT
CACTACAACCCCATAATCCCCGGTGGATTTTCCTCCGCAGCCAACGGGAG
TGCAGAGTGTCAAAGCACATTATTTTATTTTTTTAAAGAACTAGAGAGTA
GATTTTACTTTCCAAAATCGGGTTATTTTCGGTTGAATTATCGCCTCCTT
GTCTCGAGTCCCCTTGAGGGAAGGAAGGAAGAGATTAGACTATAACCACA
CATGCCAACAATGCTGGGACGGAGCAACATGCCGGCTTTTATGTGTTTTT
GATGTGTGTGTTTTTTTTGTTTTTTGCTCTGTTTCTTTTTTGAAGGGGGT
TTTCTCTTTCTTATTTTGTCGTTTATTTAGAACACTTTCATTTATTTTTG
TGTTTGTTTTTTCCTACCTCCATTACGTACAGTACTAAAAACTTGTATAA
TCCCCGACTGTTTGAACCAAAAATAAATAAAAACTGTGCGATGGTATGGA
AAGGGAAGCCTGCGTCTGTGACCACGGGTTCGAGATATCGGACTTATGTG
CGGAAATAATAATAATAATAATAATAATAATAATAATAATGATCTAACTT
TTTCTTCTTCAATGAACCTCGGATCAAATACTGATACTACTACTCTACCA
AAAGTGTGTGTGGGAAAGAGAGGCGCATAATTGGTCCATGGGGTTACCTC
AATAGGCTGCACCCGTTGCTCAAACTATCTTGAGGGCTGCTGACTCAGTG
CCGGCGGACTCTCGGTAGTAAACGCCATCCGTACGCAAATGTGTAACCTG
ATGAAATCGGTATTGGCCCGATGGCGGTTGACGGTTGAGATGGACGCCGT
CGCGGAAAACGAGAGGATCGAGAGGATCCCGGGAGTACGCATCCGATTCA
GTCCGATTCAGTCTGGGTTGAGCGACATGAGGGGGGATTATTTGCAAACC
GGCGTGGCGCCCCTTTACTTACATGTCTTGCCGGTTTGCGCGGTGTAATG
CAAAATGATAAAAATACATGAGATGTACGGGGGCGCCACGCCGGCCTTGT
TAAGCTGACCACAAGCAGGAAGCAACCAAATGTAATGAACACCCATGACA
GCTAGACGATCATCTGGAACCGTTCTCGGGAACATTCTTTGCCGGCTGAT
AACGAGGGCAGCAAAATCGCAAAATCACGAACAATTTGGGCCCCCTGTAC
CGCCGCTTGACGGTTTTTGCTGCATCCCGTGAATAAATTTGGCTTTCTTT
CGTAATGATTTACCTTTTTTGTGGCAGTTTATTTTTTCCTTTTATCTTTT
TTCGCTATTCATAGAGCAGTTTCTCTTTTAACCTTTGACCTTATTTCGTG
GGTTGTTTTGCTGATTCCCCTAGCTTGATTTTCCTGTTTCCTGTAATGTT
TTATTATTATTGTCATTTCCCGCAATTTTATCTTTCTAGTTCCACTGACT
TAATTTTGTTACTATCTCCCCCGTGACCTAATTTGTTGATTTCCGCGAAT
TATTTTGCTATTTTTTGTTTAAAGAATAACTTTAAGTAACTTCCCTGTTT
CCTTTTGGTTCATATGGCGATAGAATGGACGAGACGTGACGATAACGTTC
GAGATTCGGGACATGACCTCCGGCGGCGAAGGGGTGCGCCTTTCCGCTGT
CGTCTGCAAGAGGGTAAGATTCCGCATCATCGTTACCGTATTACCGTATT
GCCGTATCAACACTGTATTAATGTCATGTTTTATTAACTTTGAAACGAAG
TCGTCGGTGTTCAGAAACCGACTGCGTGTTATAACTAAAATTGTTGGTTG
ACAAAAGCTAAACCCCTTGACAGATGCGTCAAGGACAAGTCCCCACATTA
AAACTAATATAAGACGCCTTGACGTACTGTCAAGAACCTGTCAATCGACA
ACTACGGTTATGACGGTATTGGCGTATTGTACTTTCGACAAAATCCTAAG
TCGTACGAAGCGTGTAGTGACCTGACTGACCCTACTGAGTGTATTACCAC
AGAGCTTTGACAAAATTATCGGTGTTCCAGAAAAAACGGGGCTTCTCTAT
CGGGTTGCCCATCCGACACGCCCTCTGGATATCGAGCGAGCGAGCCGAGC
CTTCGGAAAGTGCCAATGCTTGACGCTCTTCCGTTACGTTTTACACATAT
CCCCCCGCTTTTTAGACTGCGTACACTACCGCCCGACCCGTGCCGAGCAC
CTGCTTGATGCATGAATTGCAACGGGAACACCTACCTACGGTTTTGTTTT
ACAACGGAAAAGACGATTGTTCTACTGATACCCCCATTCCGCCCCCTCCC
CCTCCCCCTCCCTCCGTCTTTCGTTTTGATTAAGGCCCAGAAGCTGCAGT
ACTACTTCTTTAAGGCCGTGGAGTTCCTCCTTCCGGGGAAATTTCTCTTC
AATTTCTTCGTCAATAGCACGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig12902:1612..7638+

>mRNA_H-elongata_contig12902.2134.1 ID=mRNA_H-elongata_contig12902.2134.1|Name=mRNA_H-elongata_contig12902.2134.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig12902:1612..7638+ (Himanthalia elongata Himel1 dioecious)
ATGGCCAACAAGGCAGAGCCTGGAAAGTCTGCATCAGCGGCTCCGCCCAG
TAGGCTAGCACTGAGCCTTAAGACTGCGCAAGCGGTGCCCGTTAATGTAG
AGATGGCCAACAAGGCAGAGCCTGGAAAGTCTGCATCAGCGGCTCCGCCC
AGTAGGCTAGCACTGAGCCTTAAGACTGCGCAAGCGGTGCCCGTTAATGT
AGAGGTGCAACTTACCCCCCAAGCCATCAGACGGGCGGGATCTATGGCGT
ACGATTACGTGCCGGGACAATACTACGCGGTTTCCCCTTACGCTGAGGAC
GGGCTCGTTTCGAGATGCGGGAAGGTGCAACTTACCCCCCAAGCCATCAG
ACGGGCGGGATCTATGGCGTACGATTACGTGCCGGGACAATACTACGCGG
TTTCCCCTTACGCTGAGGACGGGCTCGTTTCGAGATGCGGGAAGAATGGA
CGAGACGTGACGATAACGTTCGAGATTCGGGACATGACCTCCGGCGGCGA
AGGGGTGCGCCTTTCCGCTGTCGTCTGCAAGAGGAATGGACGAGACGTGA
CGATAACGTTCGAGATTCGGGACATGACCTCCGGCGGCGAAGGGGTGCGC
CTTTCCGCTGTCGTCTGCAAGAGGGCCCAGAAGCTGCAGTACTACTTCTT
TAAGGCCGTGGAGTTCCTCCTTCCGGGGAAATTTCTCTTCAATTTCTTCG
TCAATAGCACGAAGTGAGCCCAGAAGCTGCAGTACTACTTCTTTAAGGCC
GTGGAGTTCCTCCTTCCGGGGAAATTTCTCTTCAATTTCTTCGTCAATAG
CACGAAGTGA
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