mRNA_H-elongata_contig102428.213.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102428.213.1
Unique NamemRNA_H-elongata_contig102428.213.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 6.440e-43
Identity = 85/176 (48.30%), Postives = 110/176 (62.50%), Query Frame = 1
Query:    7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534
            TGL+V+   A+R+K  A +A +  L   Y+ + S C  L +  PG+VA VE+   G F+ +FVMLGRAAHA  +SP+K + +D GHLKGEW G+ML  TCKDANN  +HVATVI  KED+  YK L    KKN +M  +L  SK+T  TDQH      L   A   + R+CL HLI
Sbjct:  115 TGLRVSYSAASRLKVAATRASKEQLEHGYRIMDSYCKELVKDCPGSVAVVERETTGRFRSVFVMLGRAAHAAVRSPIKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLI 290          
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5KNP1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP1_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 6.420e-40
Identity = 79/174 (45.40%), Postives = 107/174 (61.49%), Query Frame = 1
Query:   10 GLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHL 531
            G K   R+  R K  A  A QAA AGS QQ P  C  L + SPG+VA VE++ DG+FKR+ +++ RAA   A+   KF+ VD GH+KG WKG++L+A  KD NN LV VA VICDKE+S NY++L+  MKKN  ++  L S  +TI +D++      +   A +   R C  HL
Sbjct:   15 GHKADGRSVRRYKKNAVDALQAAAAGSIQQAPGYCRELVKMSPGSVANVERHPDGSFKRIAIVVNRAALVIARGLFKFLQVDGGHMKGTWKGMVLVAAGKDTNNNLVLVAFVICDKENSTNYEFLFSEMKKNVHLKAPLESPLTTIYSDENNGIKSAIEIEASDIIHRLCCKHL 188          
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.900e-39
Identity = 83/176 (47.16%), Postives = 111/176 (63.07%), Query Frame = 1
Query:    7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534
            TGL+V+  TA+R+K  AK+A +  L   Y+ + S C  L +  PG VA V++   G F  +FVMLGRAA A  +SP+K + +D GHLKGEW G+ML  TCKDA+N +++VATVI  KED+  YK L  R  KN +M  +L  SK+T  TDQH      L + A   + R+CL HLI
Sbjct:  157 TGLRVSYSTASRLKVAAKRASKEQLEHGYRIMDSYCKELVKDCPGPVAVVQRETTGRFPSVFVMLGRAARAAVRSPVKVVGMDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLL-RNCKNPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLI 331          
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.320e-39
Identity = 83/176 (47.16%), Postives = 106/176 (60.23%), Query Frame = 1
Query:    7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534
            TGL+V+  TA+R+K  A +A    L   Y+ + S C  L +  PG+VA VE+   G F+ +FVML RAAHA  +SP+K + +D GHLKGEW G+ML  TCKDANN  +HVA VI  KED+  Y  L    KKN +M  +L  SK+T  TDQH      L   A   + R CL HLI
Sbjct:  118 TGLRVSYSTASRLKVAAARASNEQLEHGYRIMDSYCKELVKDCPGSVAVVERETTGRFRSVFVMLRRAAHAAVRSPMKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVAAVIGPKEDTSLYNTLLRNCKKNPKMRDLLEDSKTTFFTDQHKEATCALRGEAPLAQHRHCLRHLI 293          
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5K832_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K832_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 5.760e-35
Identity = 82/205 (40.00%), Postives = 103/205 (50.24%), Query Frame = 1
Query:    7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLV-----------------------------HVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534
            TG+ VA RTA RMK  A+   +A  A  YQ L S C LLQQ+ PG+VAE +                            +CVD+GHLKG+W G+ML+AT KDA+  LV                             HVAT ICDKE++ NY W Y  MK N +M  VLNS K+T+ TD+H SH P ++  A N   R+CL H I
Sbjct:   14 TGINVAHRTANRMKMTARDGDKATTAAGYQLLGSFCDLLQQQCPGSVAETQ---------------------------VLCVDAGHLKGDWNGMMLVATSKDADTKLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVATSICDKENTDNYSWFYLMMKNNVDMAEVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHI 191          
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5JAG6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.050e-29
Identity = 71/176 (40.34%), Postives = 96/176 (54.55%), Query Frame = 1
Query:    7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534
            TGL+V+   A+R+K  A +A +  L   Y+ + S                       F+R+ +MLGRAA A  +SP+K +  D GHLKGEW G++L  TCKDANN ++HVATVI  KED+  YK L    KKN +M  +L  SK+   TDQH      L   A   + R+CL H+I
Sbjct:  115 TGLRVSYSAASRLKVAATRASKEQLEHGYRIMDS-----------------------FRRVILMLGRAARAAVRSPMKVVGKDGGHLKGEWNGMVLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTIFFTDQHKGATCALRGEAPLAQHRYCLRHII 267          
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5JC04_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC04_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.080e-28
Identity = 67/174 (38.51%), Postives = 98/174 (56.32%), Query Frame = 1
Query:   10 GLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHL 531
            G  V+DR + R K     A +   AG+  +LPSL   +++  PG+VA VE + D  F R F+MLG+AA+  A S    + +D+GHLKG WKGVM +    D+NN ++HV+TV+ DKE++ NYK+L  +  +N  M  +L+S + T   D H      L         R C+ HL
Sbjct:  173 GFTVSDRQSQRAKKRIATASKEDEAGAISRLPSLFEGIERDCPGSVATVEVSPDNRFVRSFLMLGKAAYVAAHS---MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVLPQAPWRACVRHL 343          
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5L9F2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F2_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.430e-28
Identity = 68/175 (38.86%), Postives = 98/175 (56.00%), Query Frame = 1
Query:   10 GLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534
            G  V+DR + R K     A +   AG+  +LPSL   +++  PG+VA VE + D  F R F+MLG+AA+  A S    + +D+GHLKG WKGVM +    D+NN ++HV TV+ DKE++ NYK+L  +  +N  M  +L+S + T   D H      L         R C+ HLI
Sbjct:    5 GFTVSDRQSQRAKKRIATASKEDEAGAISRLPSLFEGIERDCPGSVATVEVSPDNRFVRSFLMLGKAAYVAAHS---MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVTTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFVIDGHKGSPAALRAVVPQAPWRACVRHLI 176          
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.280e-27
Identity = 64/175 (36.57%), Postives = 98/175 (56.00%), Query Frame = 1
Query:   10 GLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534
            G  V+DR + R K     A +   A +  +LPSL   +++  PG++A VE + D  F R F+MLG+AA+  A S  K + +D+GHLKG W GVM +    D+NN ++HV+TV+ DKE++ NY++L  +  +N  M+ +L+S + T   D H      L         R C+ H I
Sbjct:   84 GFTVSDRQSQRAKKRIATATKGDGAAALSRLPSLFQGIERDCPGSIATVEMSPDNRFVRSFLMLGKAAYVAAHSVPKIVAMDAGHLKGSWHGVMYVLCMHDSNNKIIHVSTVLADKENATNYEFLLQQTCRNEHMQRLLSSGEVTFYIDGHKGSPAALRAVLPQAPWRACVRHFI 258          
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5K734_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K734_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.660e-24
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  235 LKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534
            L  + +D GHLKGEW G+ML  TCKDANN ++HVATVI  KED+  YK L    KKN +M  +L  SK+T  TDQH      L   A   + R+CL HLI
Sbjct:    7 LVVVGMDGGHLKGEWNGMMLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLI 106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCT1_9PHAE6.440e-4348.30MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KNP1_9PHAE6.420e-4045.40MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUM0_9PHAE1.900e-3947.16MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L490_9PHAE5.320e-3947.16MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K832_9PHAE5.760e-3540.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAG6_9PHAE1.050e-2940.34MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JC04_9PHAE1.080e-2838.51MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L9F2_9PHAE1.430e-2838.86MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G6Q0_ECTSI1.280e-2736.57MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K734_9PHAE1.660e-2451.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102428contigH-elongata_contig102428:151..2289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.7
Seed ortholog evalue3.8e-16
Seed eggNOG ortholog90675.XP_010468544.1
EggNOG free text desc.MULE transposase domain
EggNOG OGs29CIJ@1,2RJNC@2759,37THD@33090,3GEBB@35493,3HYCN@3699
COG Functional cat.S
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size535
Cds size534
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102428.213.1prot_H-elongata_contig102428.213.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102428 151..2289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.3535924-CDS-H-elongata_contig102428:150..3091622929562.3535924-CDS-H-elongata_contig102428:150..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102428 151..309 +
1691679071.3408942-CDS-H-elongata_contig102428:150..3091691679071.3408942-CDS-H-elongata_contig102428:150..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102428 151..309 +
1622929562.370205-CDS-H-elongata_contig102428:1238..13191622929562.370205-CDS-H-elongata_contig102428:1238..1319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102428 1239..1319 +
1691679071.3560102-CDS-H-elongata_contig102428:1238..13191691679071.3560102-CDS-H-elongata_contig102428:1238..1319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102428 1239..1319 +
1622929562.384685-CDS-H-elongata_contig102428:1995..22891622929562.384685-CDS-H-elongata_contig102428:1995..2289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102428 1996..2289 +
1691679071.388414-CDS-H-elongata_contig102428:1995..22891691679071.388414-CDS-H-elongata_contig102428:1995..2289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102428 1996..2289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102428.213.1

>prot_H-elongata_contig102428.213.1 ID=prot_H-elongata_contig102428.213.1|Name=mRNA_H-elongata_contig102428.213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
ERTGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVA
EVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLA
TCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTIC
TDQHASHGPVLSQFAKNCRRRFCLVHLI
back to top

mRNA from alignment at H-elongata_contig102428:151..2289+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102428.213.1 ID=mRNA_H-elongata_contig102428.213.1|Name=mRNA_H-elongata_contig102428.213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2139bp|location=Sequence derived from alignment at H-elongata_contig102428:151..2289+ (Himanthalia elongata Himel1 dioecious)
GAGAGGACGGGGCTTAAAGTGGCGGACCGCACAGCCACAAGAATGAAGAA CGTCGCAAAGAAGGCACACCAGGCTGCGTTGGCTGGGTCATACCAGCAAC TCCCTTCTCTCTGCTCGCTGCTTCAGCAGAGGTCCCCAGGAACCGTCGCC GAAGTAGAGGTGAGCAGGAGTATATAGACTAAATAGACATTGCTTTCTCA TTTCGTTGACGTTTACACGATGACTAGAGCTATGTAATGGTGTTATTGAT GCATGTGACTAACGGACAATCAGTGGCTGTGCCGTGTTGTACATTAACTA TTATTGGGTACATCTATATATACATACGCAGAGTAAGGATCAACCTAATT TGGTTGCCTCCTGCTCGTGGTCACCTAAACAGTTGTAGCGGTAATCCGGC GTGGTTGCGTAAGCAACGTGAGTAGGATACGCCAATCCAACGTCTTCTCC CATAAGGGGGAGTATTCGCAAAACAGCATGGCGCCCCCTTACGTATCATG CCGGTTTGCGCGGTATAATACAAATGGATAAAAAGGGCTGTCCCCGGTCG CGCCTGAGAAATTGGTTTCACGAGGCGGGTTTAAGCAGTCCCGTCCGGCG CCAGCCTGCTCATTCTCTCAACCCAGGTTGAATATGTTGTGTACTCCCGC ATTCCTCTCGAACCTCTTGTTTTCAACGACGGTGTCCATCTCTACCGTCA ACCGCCATCGGGTGAATCTCTATTTGATCAAATAACATAATTGCGTACCG ATGGCGTTTACTACCGAGAGTCCGCCAGCATTGAGCCAATAGTGCTCAAG GTAGCTTGTGAAACGGGTGCAGCCTGTCAAGATAACCCCATGGACCAATT CTTGTACACAACTCTCGTTCCCACACTCATTTTGGGTAGAGTGTGCATGT GCGATACAGTCACAGACAGTATCGGAGGCGGTATAGCCTCTAGATAGACC TCCTTGTACACGTAGACCAATTCAAAACAGCAGTAGCAATGCATATCCTC TTGACTCTTTCCTCTCCTCTACATAAGAGGTTACTTCTAAGAGCACAGTC ATTGCCGTCATCGTGTACGTCCTCCGTTTCTTTTACAGAAAAACGAAGAC GGCACGTTCAAGCGCCTGTTCGTCATGCTCGGCCGTGCTGCTCATGCATG TGCGCAAAGTCCTCTGAAGGTAATTGAAAGAATATTTGTTTAAACGACGT ATTATTGAACATTGCACGTCCATGTGCCAAACTTTGTTGGAGCTGTGTGT GTGTATGCGTTTGTGTTTTCATCCCATCTATTCTGGACACCAGTCTTCAC CTTTCATTGGATTTGACTGCGTCAGTCTAGGTCACACAGGAGAAAGGCCT GCACATTTTTTTCTTCACCCTCATTTTGCGGTGCTTGTGTTAATTTCAAG TAGTTTTATTACACGATTATATGTAGTGTTCTGCCGTCGATTTTCGAGTC GATTTTTAATACTAATAATAGAGAAAATGTGCGAAAAACTCAAGCTCACC GGGAATCGAACTCACGATCTAGGTGTCAGAAGGTTTCCAGGTTTACTGAG TGAACAACCGGGGCGATCAGTTTGTCCCTGCAAGGCTATTGTTTTACACC GTCACAACATGAGGTGTAAGGCATATTCTAGATCAAATATTCTACACAGT ACTGAGTTTTCACTCCTTTCTACCTACTTCGAAGTATACAGCATAGACTT TATAACATAGAACTGCTCATAATGCTTCAGCGATTGTTTATGTGGTAATA TTGTCGTATGTGTTGAACATGAAACATTATCCGTCTCACTTGTACGATAA AAAATCTCCTAGACACCCCCCCCGCCCCCCTTTTTTATGTGGCAGTTCAT CTGCGTCGATTCAGGTCACCTCAAGGGCGAGTGGAAAGGTGTGATGCTGC TCGCGACTTGCAAAGACGCCAACAACACCCTGGTGCACGTAGCGACGGTC ATCTGCGACAAGGAAGACAGTGGCAACTACAAGTGGCTGTACGGAAGGAT GAAGAAGAATGCCGAGATGGAGACGGTGCTCAACAGCTCCAAGTCCACCA TATGCACTGACCAGCACGCTTCACATGGGCCTGTGCTGTCCCAATTCGCC AAAAACTGCAGGCGGAGATTCTGCCTGGTGCACCTAATT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig102428:151..2289+

>mRNA_H-elongata_contig102428.213.1 ID=mRNA_H-elongata_contig102428.213.1|Name=mRNA_H-elongata_contig102428.213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig102428:151..2289+ (Himanthalia elongata Himel1 dioecious)
GAGAGGACGGGGCTTAAAGTGGCGGACCGCACAGCCACAAGAATGAAGAA
CGTCGCAAAGAAGGCACACCAGGCTGCGTTGGCTGGGTCATACCAGCAAC
TCCCTTCTCTCTGCTCGCTGCTTCAGCAGAGGTCCCCAGGAACCGTCGCC
GAAGTAGAGGAGAGGACGGGGCTTAAAGTGGCGGACCGCACAGCCACAAG
AATGAAGAACGTCGCAAAGAAGGCACACCAGGCTGCGTTGGCTGGGTCAT
ACCAGCAACTCCCTTCTCTCTGCTCGCTGCTTCAGCAGAGGTCCCCAGGA
ACCGTCGCCGAAGTAGAGAAAAACGAAGACGGCACGTTCAAGCGCCTGTT
CGTCATGCTCGGCCGTGCTGCTCATGCATGTGCGCAAAGTCCTCTGAAGA
AAAACGAAGACGGCACGTTCAAGCGCCTGTTCGTCATGCTCGGCCGTGCT
GCTCATGCATGTGCGCAAAGTCCTCTGAAGTTCATCTGCGTCGATTCAGG
TCACCTCAAGGGCGAGTGGAAAGGTGTGATGCTGCTCGCGACTTGCAAAG
ACGCCAACAACACCCTGGTGCACGTAGCGACGGTCATCTGCGACAAGGAA
GACAGTGGCAACTACAAGTGGCTGTACGGAAGGATGAAGAAGAATGCCGA
GATGGAGACGGTGCTCAACAGCTCCAAGTCCACCATATGCACTGACCAGC
ACGCTTCACATGGGCCTGTGCTGTCCCAATTCGCCAAAAACTGCAGGCGG
AGATTCTGCCTGGTGCACCTAATTTTCATCTGCGTCGATTCAGGTCACCT
CAAGGGCGAGTGGAAAGGTGTGATGCTGCTCGCGACTTGCAAAGACGCCA
ACAACACCCTGGTGCACGTAGCGACGGTCATCTGCGACAAGGAAGACAGT
GGCAACTACAAGTGGCTGTACGGAAGGATGAAGAAGAATGCCGAGATGGA
GACGGTGCTCAACAGCTCCAAGTCCACCATATGCACTGACCAGCACGCTT
CACATGGGCCTGTGCTGTCCCAATTCGCCAAAAACTGCAGGCGGAGATTC
TGCCTGGTGCACCTAATT
back to top