mRNA_H-elongata_contig12895.2130.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: A0A6H5KVK0_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK0_9PHAE) HSP 1 Score: 185 bits (469), Expect = 1.730e-56 Identity = 87/175 (49.71%), Postives = 121/175 (69.14%), Query Frame = 1
Query: 13 PTRHQRVMYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNINDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHEQY 537
P QR+ YNGHKR HA F+ ++TP+G+ V L+ PV G R+++++ SGL + + + Y +YGDPAYGLS H+ + A+ V LTP++ +FNKRMS CRV+VE F+E++ WAF + KPQQK LL+PVA YRV+ L+N H+C+NGGN IS +FGV PPT E+Y
Sbjct: 4 PKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEY 178
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE) HSP 1 Score: 186 bits (473), Expect = 2.540e-55 Identity = 88/176 (50.00%), Postives = 122/176 (69.32%), Query Frame = 1
Query: 10 RPTRHQRVMYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNINDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHEQY 537
RP QR+ YNGHKR HA F+ ++TP+G+ V L+ PV G R+++++ SGL + + + Y +YGDPAYGLS H+ + A+ V LTP++ +FNKRMS CRV+VE F+E++ WAF + KPQQK LL+PVA YRV+ L+N H+C+NGGN IS +FGV PPT E+Y
Sbjct: 152 RPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEY 327
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE) HSP 1 Score: 182 bits (463), Expect = 4.680e-55 Identity = 86/176 (48.86%), Postives = 119/176 (67.61%), Query Frame = 1
Query: 10 RPTRHQRVMYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNINDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHEQY 537
RP QR+ YNGHKR HA F+ ++TP+G+ V L+ PV G R+ +++ GL + + + Y +YGDPAYGLS H+ + A+ LTP++ +FNKRMS CRV+VE F+E++ WAF + KPQQK LL+PVA YRV+ L+N H+C+NGGN IS +FGV PPT E+Y
Sbjct: 52 RPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHHSFILAQFGLMEKLSMQNSPIGHPYYLYGDPAYGLSNHLVCPFSASSAGPLTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEY 227
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: A0A6H5KLS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS3_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.030e-53 Identity = 91/176 (51.70%), Postives = 123/176 (69.89%), Query Frame = 1
Query: 10 RPTRHQRVMYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNINDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHEQY 537
RP R QR+ YN HK HAF F+ +VTP+G+ L+ PV G R++ Y+ SGL Q + + + Q Y +YGDPAYGLS H+ + A+ V LTP++ +FNKR+S+CRV+VE F+E+ + WAF N K QQKSLL+PVA YRV+ L+N H+CLNGGN IS +FGV PP+ E+Y
Sbjct: 519 RPKRWQRLFYNDHKGKHAFKFQGVVTPDGLFADLWGPVVGTRHDNYILAQSGLMQKLAMLNSPSGQPYYLYGDPAYGLSNHLICPFSASSVGPLTPEVADFNKRISACRVTVEWGFKEICNYWAFVNMKQQQKSLLSPVAVQYRVATLLSNWHSCLNGGNEISQYFGVGPPSFEEY 694
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI) HSP 1 Score: 182 bits (463), Expect = 1.360e-53 Identity = 88/177 (49.72%), Postives = 121/177 (68.36%), Query Frame = 1
Query: 10 RPTRHQRVMYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNI-NDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHEQY 537
RP R QR YNGHKR HA F+ ++TP+G+ V ++ PV G R+++Y+ SGL Q + H N + Y +YGDPAYGLS H+ + A+ LTP + +FN+RMS CRV+VE F+E++S W F + KPQQK LL+PV Y V+ L+N+H+CLNGGN IS FF V+PPT ++Y
Sbjct: 171 RPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTRHDSYLLAQSGLMQKLATHSNSPSGHPYCLYGDPAYGLSDHLACPFSASSHGPLTPDMADFNQRMSHCRVAVEWGFKEMTSKWTFVDMKPQQKYLLSPVGKQYLVATLLSNIHSCLNGGNQISQFFDVQPPTLQEY 347
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: A0A6H5JM46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM46_9PHAE) HSP 1 Score: 179 bits (455), Expect = 1.710e-52 Identity = 88/179 (49.16%), Postives = 121/179 (67.60%), Query Frame = 1
Query: 4 CNRPTRHQRVMYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNI-NDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHEQY 537
C RP R+QR YNG+KR HA F+ +VTP+G+ V LY V G R++ ++ S L + +Q HMN + Y +YG+PAYG + HI + ++ LTP + FNK MS CRV+VE F+E++S WAF + K Q K LL+PVAT Y+V+ L+N H+CLNGGN IS +FGV+PPT E+Y
Sbjct: 160 CARPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVELYGAVVGTRHDGHLLAQSALLEKLQTHMNSPSGHRYCLYGNPAYGQTDHIQCPFSVSVNGPLTPAMRNFNKSMSRCRVTVEWGFKEMTSKWAFIDMKCQHKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEY 338
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE) HSP 1 Score: 179 bits (453), Expect = 2.270e-51 Identity = 89/177 (50.28%), Postives = 121/177 (68.36%), Query Frame = 1
Query: 10 RPTRHQRVMYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNI-NDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHEQY 537
RP R++R YNG+KR HA F+ +VTP+G+ V LY G ++ Y+ S L + +Q HMN + Y VYGDPAYG + HI + A++ LTP + +FNK MS CRV+VE F+E++S WAF + K QQK LL+PVAT Y+V+ L+N H+CLNGGN IS +FGV+PPT E+Y
Sbjct: 241 RPIRNKRFFYNGYKRKHAIKFQGVVTPDGLFVDLYDAEVGTTHDGYLLAESTLLEKLQTHMNSPSGHPYCVYGDPAYGQTDHIQCPFSASVNGPLTPAMRKFNKSMSQCRVTVEWGFKEMTSKWAFVDMKCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEY 417
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: A0A6H5K0J0_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J0_9PHAE) HSP 1 Score: 174 bits (440), Expect = 3.020e-51 Identity = 84/173 (48.55%), Postives = 114/173 (65.90%), Query Frame = 1
Query: 13 PTRHQRVMYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNINDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHE 531
P QR+ YNGHKR HA F+ I+TP+G+ V L+ PV G R++++M SGL + + + Y +YGDPAYGL H+ + A+ V TP++ +FNKR S CRV+VE F+E++ WAF N KPQQK LL+PVA YRV+ L+N H+C+NGGN I +FGV P T E
Sbjct: 83 PKYWQRLFYNGHKRKHAMKFQGIITPDGLFVDLWGPVAGTRHDSFMLAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLRNHLVCPFSASSVGPFTPEMADFNKRTSHCRVTVEWGFKEMTGKWAFVNMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEIWQYFGVVPSTFE 255
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: A0A6H5JJ08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ08_9PHAE) HSP 1 Score: 173 bits (439), Expect = 8.290e-50 Identity = 82/176 (46.59%), Postives = 117/176 (66.48%), Query Frame = 1
Query: 10 RPTRHQRVMYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNINDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHEQY 537
RP QR+ YNGHKR HA F+ ++TP+G+ V L+ PV G R+++++ SGL + + + Y +YGDPAYGLS ++ + A+ V TP++ +FNKRMS CRV+VE F+E++ W N KPQQK L+P+A YRV+ L+N H+C+NGGN IS +FGV P T E+Y
Sbjct: 190 RPKYWQRMFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNYLVCPFSASSVGPRTPEMADFNKRMSHCRVTVEWGFKEMTGKWVLVNMKPQQKFSLSPIAKQYRVATLLSNWHSCMNGGNEISQYFGVVPLTFEEY 365
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Match: A0A6H5KEG5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG5_9PHAE) HSP 1 Score: 163 bits (413), Expect = 7.620e-48 Identity = 77/156 (49.36%), Postives = 107/156 (68.59%), Query Frame = 1
Query: 70 FKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQEHMNINDQAYQVYGDPAYGLSQHIYTLYKATIVVDLTPQICEFNKRMSSCRVSVE*AFREVSSLWAFCNYKPQQKSLLNPVATHYRVSVFLTNLHTCLNGGNHISDFFGVKPPTHEQY 537
F+ ++TP+G+ V L+ PV G R+++++ SGL + + + Y +YGDPAYGLS H+ + A+ V LTP++ +FNKRMS CRV+VE F+E++ WAF N KPQQK L NPVA YRV+ L+N H+C+NGGN IS FGV PPT E+Y
Sbjct: 3 FQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEITGKWAFVNMKPQQKFLFNPVAKQYRVATLLSNWHSCMNGGNEISQCFGVVPPTFEEY 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12895.2130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12895.2130.1 >prot_H-elongata_contig12895.2130.1 ID=prot_H-elongata_contig12895.2130.1|Name=mRNA_H-elongata_contig12895.2130.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MYNGHKRCHAFMFKEIVTPEGVIVSLYVPVEGARYEAYMYQCSGLGQLMQback to top mRNA from alignment at H-elongata_contig12895:5873..6409+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12895.2130.1 ID=mRNA_H-elongata_contig12895.2130.1|Name=mRNA_H-elongata_contig12895.2130.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig12895:5873..6409+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12895:5873..6409+ >mRNA_H-elongata_contig12895.2130.1 ID=mRNA_H-elongata_contig12895.2130.1|Name=mRNA_H-elongata_contig12895.2130.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig12895:5873..6409+ (Himanthalia elongata Himel1 dioecious)back to top |