mRNA_H-elongata_contig128913.2127.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128913.2127.1
Unique NamemRNA_H-elongata_contig128913.2127.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: A0A6H5KES1_9PHAE (Epimerase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KES1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.410e-31
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V    +CLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQT+ DERLVNRFDYDSDYGTVLNR+
Sbjct:  268 PGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRF 333
[Close]
BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: A0A812V709_SYMMI (SQD1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V709_SYMMI)

HSP 1 Score: 114 bits (284), Expect = 4.160e-30
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V    +CLDAL FQFY KNDG+R+TDLHQGIVWGTNTPQT+ DERL+NRFDYD DYGTVLNR+
Sbjct:   36 PGSVYHLTKCLDALTFQFYNKNDGVRVTDLHQGIVWGTNTPQTLRDERLINRFDYDGDYGTVLNRF 101
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BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: A0A6V2A4T4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2A4T4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.240e-30
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V  A +CLDALL+QFY KNDGLR+TDLHQGIVWGTNTPQTI DERLVNRFDYD DYGTVLNR+
Sbjct:  256 PGSVYHATKCLDALLWQFYQKNDGLRITDLHQGIVWGTNTPQTIKDERLVNRFDYDGDYGTVLNRF 321
[Close]
BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: K0T4Y6_THAOC (Epimerase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T4Y6_THAOC)

HSP 1 Score: 117 bits (294), Expect = 4.310e-30
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V  A +CLDALLFQFY KND LR+TDLHQGIVWGTNTPQTI DERL+NRFDYD DYGTVLNR+
Sbjct:  173 PGSVYHATKCLDALLFQFYQKNDALRVTDLHQGIVWGTNTPQTIKDERLINRFDYDGDYGTVLNRF 238
[Close]
BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: B8C7K5_THAPS (Sulfolipid biosynthesis protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7K5_THAPS)

HSP 1 Score: 118 bits (295), Expect = 7.070e-30
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V  A +CLDALL+QFY KNDGLR+TDLHQGIVWGTNTPQTI DERL+NRFDYD DYGTVLNR+
Sbjct:  241 PGSVYHATKCLDALLWQFYQKNDGLRVTDLHQGIVWGTNTPQTIKDERLINRFDYDGDYGTVLNRF 306
[Close]
BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: A0A4D9CYN6_9STRA (Epimerase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYN6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.380e-30
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V    +CLDALLFQFY KNDG+R+TDLHQGIVWGTNTPQTI DERL+NRFDYD DYGTVLNR+
Sbjct:  189 PGSVYHTTKCLDALLFQFYNKNDGIRVTDLHQGIVWGTNTPQTIKDERLINRFDYDGDYGTVLNRF 254
[Close]
BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: A0A6T8PLL4_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6T8PLL4_HEMAN)

HSP 1 Score: 118 bits (295), Expect = 1.040e-29
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V    +CLDALLFQFY KNDG+R+TDLHQGIVWGTNTPQT LDERLVNRFDYD DYGTVLNR+
Sbjct:  272 PGSVYHTTKCLDALLFQFYNKNDGIRVTDLHQGIVWGTNTPQTALDERLVNRFDYDGDYGTVLNRF 337
[Close]
BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: A0A6V1JXM6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1JXM6_HETAK)

HSP 1 Score: 117 bits (293), Expect = 1.300e-29
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V  A +CLDA++FQFY KNDGL++TDLHQGIVWGTNTPQTI DERLVNRFDYD DYGTVLNR+
Sbjct:  229 PGSVYHATKCLDAIMFQFYNKNDGLKVTDLHQGIVWGTNTPQTIKDERLVNRFDYDGDYGTVLNRF 294
[Close]
BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: A0A7R9ZD26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZD26_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.350e-29
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V  A +CLDALL+QFY KND LR+TDLHQGIVWGTNTPQT LDERLVNRFDYD DYGTVLNR+
Sbjct:  203 PGSVYHATKCLDALLWQFYQKNDQLRITDLHQGIVWGTNTPQTRLDERLVNRFDYDGDYGTVLNRF 268
[Close]
BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Match: A0A7S4N1Z5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1Z5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.420e-29
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLVNRFDYDSDYGTVLNRY 198
            P +V  A +CLDALL+QFY KND LR+TDLHQGIVWGTNTPQT+LDERLVNRFDYD DYGTVLNR+
Sbjct:  244 PGSVYHATKCLDALLWQFYQKNDQLRITDLHQGIVWGTNTPQTLLDERLVNRFDYDGDYGTVLNRF 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128913.2127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KES1_9PHAE1.410e-3184.85Epimerase domain-containing protein n=2 Tax=Ectoca... [more]
A0A812V709_SYMMI4.160e-3075.76SQD1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A6V2A4T4_9STRA4.240e-3081.82Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0T4Y6_THAOC4.310e-3080.30Epimerase domain-containing protein n=1 Tax=Thalas... [more]
B8C7K5_THAPS7.070e-3080.30Sulfolipid biosynthesis protein n=1 Tax=Thalassios... [more]
A0A4D9CYN6_9STRA7.380e-3078.79Epimerase domain-containing protein n=2 Tax=Monodo... [more]
A0A6T8PLL4_HEMAN1.040e-2980.30Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]
A0A6V1JXM6_HETAK1.300e-2978.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9ZD26_9STRA1.350e-2980.30Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4N1Z5_9STRA1.420e-2980.30Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128913contigH-elongata_contig128913:269..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2e-26
Seed eggNOG ortholog2880.D8LSQ1
Preferred nameSQD1
KEGG rclassRC00563,RC01469
KEGG koko:K01785,ko:K06118
KEGG ReactionR01602,R05775,R10619
KEGG Pathwayko00010,ko00052,ko00520,ko00561,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map00520,map00561,map01100,map01110,map01120,map01130
KEGG ModuleM00632
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006643,GO:0006664,GO:0006950,GO:0007154,GO:0008146,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009987,GO:0009991,GO:0016036,GO:0016740,GO:0016782,GO:0019899,GO:0019904,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0101016,GO:1901135,GO:1901137,GO:1901576,GO:1903509
EggNOG free text desc.racemase and epimerase activity, acting on carbohydrates and derivatives
EggNOG OGsCOG1087@1,KOG1371@2759
EC3.13.1.1,5.1.3.3
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.919093-CDS-H-elongata_contig128913:268..4661622929766.919093-CDS-H-elongata_contig128913:268..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128913 269..466 +
1691679149.7143548-CDS-H-elongata_contig128913:268..4661691679149.7143548-CDS-H-elongata_contig128913:268..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128913 269..466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128913.2127.1prot_H-elongata_contig128913.2127.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128913 269..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128913.2127.1

>prot_H-elongata_contig128913.2127.1 ID=prot_H-elongata_contig128913.2127.1|Name=mRNA_H-elongata_contig128913.2127.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
PATVTTALRCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTILDERLV
NRFDYDSDYGTVLNRY
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mRNA from alignment at H-elongata_contig128913:269..466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128913.2127.1 ID=mRNA_H-elongata_contig128913.2127.1|Name=mRNA_H-elongata_contig128913.2127.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig128913:269..466+ (Himanthalia elongata Himel1 dioecious)
CCCGCCACCGTAACCACTGCTCTCAGGTGCTTGGACGCCTTGCTGTTCCA
GTTTTACGCGAAAAACGACGGTCTCCGACTGACCGACCTTCACCAAGGCA
TCGTGTGGGGCACCAACACGCCGCAGACCATCCTCGACGAGCGACTCGTC
AACCGCTTCGACTACGACAGCGACTACGGCACGGTCCTTAATCGGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig128913:269..466+

>mRNA_H-elongata_contig128913.2127.1 ID=mRNA_H-elongata_contig128913.2127.1|Name=mRNA_H-elongata_contig128913.2127.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig128913:269..466+ (Himanthalia elongata Himel1 dioecious)
CCCGCCACCGTAACCACTGCTCTCAGGTGCTTGGACGCCTTGCTGTTCCA
GTTTTACGCGAAAAACGACGGTCTCCGACTGACCGACCTTCACCAAGGCA
TCGTGTGGGGCACCAACACGCCGCAGACCATCCTCGACGAGCGACTCGTC
AACCGCTTCGACTACGACAGCGACTACGGCACGGTCCTTAATCGGTACCC
CGCCACCGTAACCACTGCTCTCAGGTGCTTGGACGCCTTGCTGTTCCAGT
TTTACGCGAAAAACGACGGTCTCCGACTGACCGACCTTCACCAAGGCATC
GTGTGGGGCACCAACACGCCGCAGACCATCCTCGACGAGCGACTCGTCAA
CCGCTTCGACTACGACAGCGACTACGGCACGGTCCTTAATCGGTAC
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