mRNA_H-elongata_contig128860.2125.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128860.2125.1
Unique NamemRNA_H-elongata_contig128860.2125.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: D8LB65_ECTSI (Glucokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB65_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.470e-17
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 RILQGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVAYRV 147
            R+L+G+DS FMK FYDKGRVS LLK +P+YAVL ED+GLRGAHFVAYR+
Sbjct:  297 RMLEGEDSPFMKGFYDKGRVSSLLKAVPVYAVLVEDIGLRGAHFVAYRL 345
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: A0A6H5KCG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.170e-16
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   10 QGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVAYRV 147
            +G+DS FMK F+DKGRVSGLLK +P+YAVL ED+GLRGAHFVAYR+
Sbjct:  302 RGEDSPFMKGFHDKGRVSGLLKAVPMYAVLVEDIGLRGAHFVAYRL 347
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: A0A7S2GDA4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GDA4_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 5.500e-12
Identity = 29/48 (60.42%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    4 ILQGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVAYRV 147
            +L+G DSAFM++F DKGR+S L++ +P+YAVL ED+G RGAH VA+R+
Sbjct:  601 LLRGDDSAFMQAFRDKGRLSPLIRRVPVYAVLAEDIGQRGAHLVAFRL 648
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: A0A7S0FHU7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FHU7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.650e-11
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 RILQGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVAYR 144
            + ++G+DS F+K+F+DKGRVS LL  IP++AV+ ED+GLRGA   A R
Sbjct:   73 QYIEGEDSPFLKAFFDKGRVSPLLDSIPVFAVMNEDIGLRGARVCAMR 120
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: A0A7S2R1U2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R1U2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.520e-11
Identity = 28/46 (60.87%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 LQGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVAYR 144
            +QG++S FMK+F+DKGRV G+LK IP++AV+++DLGLRGA+  A R
Sbjct:  369 IQGEESEFMKAFWDKGRVKGILKDIPLFAVMQQDLGLRGAYVCALR 414
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: A0A7S0FHD6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FHD6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.180e-10
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 RILQGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVAYR 144
            + ++G+DS F+K+F+DKGRVS LL  IP++AV+ ED+GLRGA   A R
Sbjct:  158 QYIEGEDSPFLKAFFDKGRVSPLLDSIPVFAVMNEDIGLRGARVCAMR 205
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: A0A7S2PAX2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PAX2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.330e-10
Identity = 27/47 (57.45%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 ILQGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVAYR 144
            ++QG+DS FMK++ DKGR++GL++ IPI+AV+ ED+GLRGA   A R
Sbjct:  410 MIQGEDSPFMKAYLDKGRMNGLIESIPIFAVMNEDVGLRGARVCAER 456
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: A0A835YKJ2_9STRA (Glucokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKJ2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.090e-10
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    7 LQGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVA 138
            L G DS FMK+F D+GRVS +L  IPIYAVL ED+G RGAH+ A
Sbjct:  288 LTGPDSCFMKAFKDQGRVSPMLDAIPIYAVLEEDIGQRGAHYAA 331
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: A0A6V2YTH0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2YTH0_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 4.300e-10
Identity = 26/48 (54.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    4 ILQGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVAYRV 147
            +++G+ S F+ ++ DKGR++G+L  IP++AV+ EDLGLRGAHFVA+R+
Sbjct:  307 LIEGEGSPFLVAYRDKGRLAGVLDGIPLHAVMCEDLGLRGAHFVAFRL 354
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BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Match: A0A7S1CZI5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZI5_CYCTE)

HSP 1 Score: 61.6 bits (148), Expect = 8.060e-10
Identity = 26/41 (63.41%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    7 LQGKDSAFMKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAH 129
            ++G+DS FMK+++DKGRVS LL+ IP++AV+ EDLG+RGAH
Sbjct:  321 IEGQDSEFMKAYHDKGRVSPLLETIPLFAVMVEDLGVRGAH 361
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128860.2125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB65_ECTSI1.470e-1775.51Glucokinase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KCG9_9PHAE7.170e-1676.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GDA4_9EUKA5.500e-1260.42Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S0FHU7_9STRA2.650e-1156.25Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2R1U2_9STRA3.520e-1160.87Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0FHD6_9STRA1.180e-1056.25Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2PAX2_9STRA2.330e-1057.45Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A835YKJ2_9STRA3.090e-1065.91Glucokinase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6V2YTH0_HETAK4.300e-1054.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1CZI5_CYCTE8.060e-1063.41Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128860contigH-elongata_contig128860:422..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue6.9e-11
Seed eggNOG ortholog2880.D8LB65
Preferred nameGLK1
KEGG rclassRC00002,RC00017
KEGG koko:K00845
KEGG ReactionR00299,R01600,R01786
KEGG Pathwayko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00549
EggNOG free text desc.Glucokinase
EggNOG OGs2QSB1@2759,COG0837@1
EC2.7.1.2
COG Functional cat.G
BiGG ReactioniRC1080.CRv4_Au5_s1_g1623_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionGlucokinase
Ec32 orthologEc-27_005030.1
Exons1
Model size147
Cds size117
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.6297793-UTR-H-elongata_contig128860:421..4511622929766.6297793-UTR-H-elongata_contig128860:421..451Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128860 422..451 +
1691679149.5642247-UTR-H-elongata_contig128860:421..4511691679149.5642247-UTR-H-elongata_contig128860:421..451Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128860 422..451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.643347-CDS-H-elongata_contig128860:451..5681622929766.643347-CDS-H-elongata_contig128860:451..568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128860 452..568 +
1691679149.5772114-CDS-H-elongata_contig128860:451..5681691679149.5772114-CDS-H-elongata_contig128860:451..568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128860 452..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128860.2125.1prot_H-elongata_contig128860.2125.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128860 452..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128860.2125.1

>prot_H-elongata_contig128860.2125.1 ID=prot_H-elongata_contig128860.2125.1|Name=mRNA_H-elongata_contig128860.2125.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MKSFYDKGRVSGLLKCIPIYAVLREDLGLRGAHFVAYRV
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mRNA from alignment at H-elongata_contig128860:422..568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128860.2125.1 ID=mRNA_H-elongata_contig128860.2125.1|Name=mRNA_H-elongata_contig128860.2125.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig128860:422..568+ (Himanthalia elongata Himel1 dioecious)
CGCATTTTACAGGGAAAGGACAGCGCTTTCATGAAGTCTTTCTATGACAA
GGGGCGGGTGTCTGGGCTGCTCAAGTGTATACCGATATATGCCGTCCTTA
GGGAGGACCTCGGACTGAGAGGGGCACACTTCGTTGCCTACCGAGTA
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Coding sequence (CDS) from alignment at H-elongata_contig128860:422..568+

>mRNA_H-elongata_contig128860.2125.1 ID=mRNA_H-elongata_contig128860.2125.1|Name=mRNA_H-elongata_contig128860.2125.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig128860:422..568+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTCTTTCTATGACAAGGGGCGGGTGTCTGGGCTGCTCAAGTGTAT
ACCGATATATGCCGTCCTTAGGGAGGACCTCGGACTGAGAGGGGCACACT
TCGTTGCCTACCGAGTAATGAAGTCTTTCTATGACAAGGGGCGGGTGTCT
GGGCTGCTCAAGTGTATACCGATATATGCCGTCCTTAGGGAGGACCTCGG
ACTGAGAGGGGCACACTTCGTTGCCTACCGAGTA
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