mRNA_H-elongata_contig128826.2122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128826.2122.1
Unique NamemRNA_H-elongata_contig128826.2122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128826.2122.1 vs. uniprot
Match: D8LS26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS26_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 4.480e-42
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:    1 MLLLEMTDFLWFMSGLLQMTTGVFSEKINTGVDRFGGAVFGIPNWGSRSVPDRWSAAKSKASEWSAWVEVMFGMILIAELILPRR 255
            M+LLE+TDFLWF+SGLLQM+ G F EK+N GVDRFGGA+FGIPNWGSRSV DRWSAAKSKASEW AW+EVMFGMIL+AEL+LPRR
Sbjct:  303 MVLLELTDFLWFLSGLLQMSPGAFFEKLNRGVDRFGGALFGIPNWGSRSVTDRWSAAKSKASEWGAWIEVMFGMILVAELLLPRR 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128826.2122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS26_ECTSI4.480e-4282.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128826contigH-elongata_contig128826:393..1687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue4.3e-34
Seed eggNOG ortholog2880.D8LS26
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-08_001880.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.3296487-CDS-H-elongata_contig128826:392..5381622929766.3296487-CDS-H-elongata_contig128826:392..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128826 393..538 +
1691679149.4648945-CDS-H-elongata_contig128826:392..5381691679149.4648945-CDS-H-elongata_contig128826:392..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128826 393..538 +
1622929766.3446736-CDS-H-elongata_contig128826:1578..16871622929766.3446736-CDS-H-elongata_contig128826:1578..1687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128826 1579..1687 +
1691679149.4762955-CDS-H-elongata_contig128826:1578..16871691679149.4762955-CDS-H-elongata_contig128826:1578..1687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128826 1579..1687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128826.2122.1prot_H-elongata_contig128826.2122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128826 393..1687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128826.2122.1

>prot_H-elongata_contig128826.2122.1 ID=prot_H-elongata_contig128826.2122.1|Name=mRNA_H-elongata_contig128826.2122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MLLLEMTDFLWFMSGLLQMTTGVFSEKINTGVDRFGGAVFGIPNWGSRSV
PDRWSAAKSKASEWSAWVEVMFGMILIAELILPRR
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mRNA from alignment at H-elongata_contig128826:393..1687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128826.2122.1 ID=mRNA_H-elongata_contig128826.2122.1|Name=mRNA_H-elongata_contig128826.2122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1295bp|location=Sequence derived from alignment at H-elongata_contig128826:393..1687+ (Himanthalia elongata Himel1 dioecious)
ATGTTGCTGCTCGAAATGACGGACTTCCTGTGGTTTATGAGCGGACTTCT
GCAGATGACCACCGGTGTATTTTCTGAAAAGATTAACACAGGCGTCGATA
GGTTCGGAGGGGCAGTGTTTGGCATTCCCAACTGGGGCTCTCGAAGGTGC
AGGCAACATTAAGATATACATACATATACCTATATAATATACGTCGACAA
AGGCAGTAGAGAAAGGTCGTAATGTAATTTATGGCAATTTACCGTCTCTC
TCTCTCTCTCTCTATATATATATGTAATTTATTGAATCCTCACATAATAT
AAGCTGATGTCGAAATCCAGCCCATGGTCACAAGGTATGTACGGTAGGTA
TGTATCTCGTATAATGTCCCTAAAAACATCCGGGGTGGAGAAAAATAAGC
GACGAGAGTGCCGACACTGTTGTTTTAAAGGTCGAGCGAGTTTGTTTTTT
GAGAAAAGTCCACGCAATAGAAATGTACTACAGTACAGTACCCTCTTACA
GTGCCAAAACGCTATACATGTAAGGAGGCCGGTGTATTTATAAGGAGGCT
TTTTGTTGTTGCTCTCTCGCCAAGAAGCGCTTGTACCTTGTTTGGACGGC
ACAATGCGCACTGGTGTAAGTTACCTTTGTAATTTACTCAACTATATTAT
ATACCTGTATAGCATAGCATAGTGTAGTGTAGCAGCAGGCGAAGAACGTC
GTAGTTTCAAAACGTTTTTTGATCAAGGTAGTTTATTGAACTATATTGGT
ATTGAACTATATTAGTATTCGATTATTAAGTAGATAGATTAGTAGCTCGG
TGAGATAATTCGGGTGTGTTTCATTAGGCAGCTCCTACATTGTCGTGGTT
GACAAGCAAAAGCTTGTGCGCTGGCTCGGTTGGACATGATGAATCGCTCA
CACTATACACCAATACGCCAAGAGCCAAAAACCTACCCCGCCCTACCCTC
CCTTGTCCGAGAGGGGTCGTGGTCATCAAATTTACCGCCATCCAGTTTTA
GCGACATCAGCAATGTTGGCCATAAGATTACTTCGTTTTACCCCACGACC
TATGTGGTTTGGCATGTTTTATTTTACTGTAGTTTTTCGTGACGTGCCTG
TGTGTCAATCTCCAGTCCCAAAACCACAACCCCCGACGTTAACGTTCATG
TTGGGTTTGCTGCTGATATTGCCCCTATTGCCCCAGCGTGCCGGATCGAT
GGTCGGCCGCCAAGAGCAAGGCTTCCGAATGGAGCGCTTGGGTAGAGGTG
ATGTTCGGCATGATCCTGATCGCAGAGCTAATTCTGCCCCGCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig128826:393..1687+

>mRNA_H-elongata_contig128826.2122.1 ID=mRNA_H-elongata_contig128826.2122.1|Name=mRNA_H-elongata_contig128826.2122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig128826:393..1687+ (Himanthalia elongata Himel1 dioecious)
ATGTTGCTGCTCGAAATGACGGACTTCCTGTGGTTTATGAGCGGACTTCT
GCAGATGACCACCGGTGTATTTTCTGAAAAGATTAACACAGGCGTCGATA
GGTTCGGAGGGGCAGTGTTTGGCATTCCCAACTGGGGCTCTCGAAGATGT
TGCTGCTCGAAATGACGGACTTCCTGTGGTTTATGAGCGGACTTCTGCAG
ATGACCACCGGTGTATTTTCTGAAAAGATTAACACAGGCGTCGATAGGTT
CGGAGGGGCAGTGTTTGGCATTCCCAACTGGGGCTCTCGAAGCGTGCCGG
ATCGATGGTCGGCCGCCAAGAGCAAGGCTTCCGAATGGAGCGCTTGGGTA
GAGGTGATGTTCGGCATGATCCTGATCGCAGAGCTAATTCTGCCCCGCAG
GCGTGCCGGATCGATGGTCGGCCGCCAAGAGCAAGGCTTCCGAATGGAGC
GCTTGGGTAGAGGTGATGTTCGGCATGATCCTGATCGCAGAGCTAATTCT
GCCCCGCAGG
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