mRNA_H-elongata_contig102402.212.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102402.212.1
Unique NamemRNA_H-elongata_contig102402.212.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 2.290e-80
Identity = 162/309 (52.43%), Postives = 183/309 (59.22%), Query Frame = 1 
Query:   16 DPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDEXXXXXRDGDANATGDKKALPKAVRREEDTGVEL----GDVTSSGRCG--------------------------------------------------RKRRRPRPRSYNETLLADKAFHNPQASETMADAYGILRPASFVLDVRDDDR----TLGVVGSG-KGAT-EGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNPQ 762
            DP  G  EE+AG  V+EH+D WGF+WMPAIE+FVEQA    +          N     ++ P       DT        G  T++ R                                                         PRP SYNETLLADK+FHNP ASETMADA+GILRPASFVLDV +DDR      GV  +G KGAT EG +  A+V    GG +D+ WFYDTVRDRQNRLWAD+RVRKGVELARKGQHQAA+D YTQALGMCPDHDDGLVARGAAFATTGRLRQA QDLSRALS+NPQ
Sbjct:   52 DPPNG-DEEDAGASVNEHADTWGFSWMPAIEDFVEQAAEAQQQ---------NXXXXXESSPLGANYRSDTDXXXXXLRGPPTNTSRSSFCDPTSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRPPSYNETLLADKSFHNPHASETMADAFGILRPASFVLDVGEDDRPWGGAAGVAAAGAKGATAEGGE--ADVTTGHGGSEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQ 348
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BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: A0A836CKS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-13
Identity = 45/106 (42.45%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:  358 MADAYGILRPASFVLDVRDDDRTLGVVGSGKGATEGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGL 675
            MA A+ + RP SF +DV  D         G GA                   R WF++ +R+RQ+R WAD+RV KG ELAR GQH AA+  Y QALGMC  H D +
Sbjct:    1 MASAFRVCRPLSFAVDVAAD---------GAGA-------------------RDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAV 78
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BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: L1I460_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I460_GUITC)

HSP 1 Score: 55.1 bits (131), Expect = 2.250e-6
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:  526 YDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNP 759
            Y  +R +QN  WA+  VRKG+  A    +  A+  Y  AL +  ++ D  VA GAA+A T +  +A +  S+AL + P
Sbjct:    3 YSELRKKQNVSWANESVRKGIHHAADRNYVMAIKCYQNALELDSENADAYVALGAAYANTSKSHEAIEAFSKALEIQP 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK49_ECTSI2.290e-8052.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKS1_9STRA1.160e-1342.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L1I460_GUITC2.250e-635.90Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102402contigH-elongata_contig102402:1..1498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score269.2
Seed ortholog evalue1.9e-69
Seed eggNOG ortholog2880.D7FK49
Preferred nameTTC14
KEGG koko:K17908
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.TPR repeat
EggNOG OGs28H66@1,2QPJ1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_005830.1
Exons2
Model size762
Cds size762
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.2801178-CDS-H-elongata_contig102402:0..1471622929562.2801178-CDS-H-elongata_contig102402:0..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102402 1..147 -
1691679071.3026526-CDS-H-elongata_contig102402:0..1471691679071.3026526-CDS-H-elongata_contig102402:0..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102402 1..147 -
1622929562.299113-CDS-H-elongata_contig102402:883..14981622929562.299113-CDS-H-elongata_contig102402:883..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102402 884..1498 -
1691679071.3256114-CDS-H-elongata_contig102402:883..14981691679071.3256114-CDS-H-elongata_contig102402:883..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102402 884..1498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102402.212.1prot_H-elongata_contig102402.212.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102402 1..1498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102402.212.1

>prot_H-elongata_contig102402.212.1 ID=prot_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
MQIPTDPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDESDD
DSRDGDANATGDKKALPKAVRREEDTGVELGDVTSSGRCGRKRRRPRPRS
YNETLLADKAFHNPQASETMADAYGILRPASFVLDVRDDDRTLGVVGSGK
GATEGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELAR
KGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALS
LNPQ
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mRNA from alignment at H-elongata_contig102402:1..1498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102402.212.1 ID=mRNA_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1498bp|location=Sequence derived from alignment at H-elongata_contig102402:1..1498- (Himanthalia elongata Himel1 dioecious)
ATGCAGATCCCGACCGATCCCACGCAGGGTAAGAGCGAAGAGGAGGCCGG
ACCAGTGGTGCACGAGCACTCCGATGCGTGGGGCTTCGCGTGGATGCCCG
CAATCGAAAACTTCGTTGAACAAGCCGTGTCGGAGGATGAGTCGGACGAC
GACAGTCGCGACGGGGACGCCAATGCCACAGGCGACAAAAAAGCGTTGCC
AAAAGCAGTCCGACGCGAGGAGGATACCGGGGTGGAACTTGGTGACGTTA
CATCTTCCGGAAGATGCGGCCGAAAGCGTCGGAGGCCTCGACCGCGATCG
TACAACGAAACACTCTTGGCGGACAAAGCCTTCCACAACCCGCAAGCCTC
TGAAACCATGGCCGATGCTTACGGCATCTTGCGCCCAGCGTCTTTTGTGC
TCGACGTTCGGGACGACGATCGGACGTTAGGGGTTGTCGGGTCGGGAAAG
GGGGCGACAGAGGGAAACGACGTGAATGCTGAAGTGCGTGGCGATGGAGG
TGGCAGAGATGATCGTGGCTGGTTCTACGACACAGTGCGAGATCGGCAGA
ACAGGCTGTGGGCGGATTCGAGGGTCAGAAAGGGAGTCGAGCTTGCCCGA
AAGGGACAACATCAGGTGAGGTCCGCGCTCTCGCCCTCGCCCTAACCCTC
ACCCTATGAACCTGAGTGCCGCTTCTTCGGTCGATTTGACTCATTTGTAG
CAAAACGCTCTTTGTCCGTCCCTGTTTGTATTACGAGCAGCCTCCCCGTG
TGTTGCTTTCTGCTCGACGCTTAAGGGTTATGATCTGATTGGGTGATTCG
CACTTTTGCCCTTCCAGCTATATATATATGATGATACAACTTGGTCAACA
AAATACCTATCAAGTGCCTATCCCGCTAGTGGGGGGATGGGTGGGGGCAA
AGAGGTACGGAGATGAACGGGTCACATCTTAGTGACGTCACACCCCGCTA
AGCACACCACATCCTCGTTGGATCCAACCATCCGATAGCAGCTAAAACGT
GTCACGACAATGCGGTACAAACTTTAAAGCGCGTGTGTCCGATGTCCTGC
TTGTAGTCCATAACCTATACAGACTGTTGTGCGTGGTACAGTATCGGTAG
GCTACACGTAGGCAAGGTGTGCGGCACTCCGCGAGGACCGACTTTGTGTT
GATGTTAAATAGCTGATGCTACGAGGTACGCCAAGAACTTGGTTGGAACG
GTTCTAATTAGGTCCCCATCTGTAAGTTAGGGTGGTCGGGCCTCGGAGCT
ACGTGCGAAGATTACCACCCTTTGCGTGGCTCCCGGCATCGATACCCTGC
CTCCCTCTCCCTACCGATGATTGCCCTTTTGCCACATGGAACGGCACCTA
GGCTGCTGTCGACGTCTACACACAAGCCTTGGGAATGTGCCCGGACCATG
ATGACGGTTTGGTTGCACGAGGAGCCGCGTTTGCCACGACGGGTCGGTTA
CGACAAGCAACGCAAGACCTATCGAGAGCGCTCAGCCTCAACCCGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig102402:1..1498-

>mRNA_H-elongata_contig102402.212.1 ID=mRNA_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig102402:1..1498- (Himanthalia elongata Himel1 dioecious)
ATGCAGATCCCGACCGATCCCACGCAGGGTAAGAGCGAAGAGGAGGCCGG
ACCAGTGGTGCACGAGCACTCCGATGCGTGGGGCTTCGCGTGGATGCCCG
CAATCGAAAACTTCGTTGAACAAGCCGTGTCGGAGGATGAGTCGGACGAC
GACAGTCGCGACGGGGACGCCAATGCCACAGGCGACAAAAAAGCGTTGCC
AAAAGCAGTCCGACGCGAGGAGGATACCGGGGTGGAACTTGGTGACGTTA
CATCTTCCGGAAGATGCGGCCGAAAGCGTCGGAGGCCTCGACCGCGATCG
TACAACGAAACACTCTTGGCGGACAAAGCCTTCCACAACCCGCAAGCCTC
TGAAACCATGGCCGATGCTTACGGCATCTTGCGCCCAGCGTCTTTTGTGC
TCGACGTTCGGGACGACGATCGGACGTTAGGGGTTGTCGGGTCGGGAAAG
GGGGCGACAGAGGGAAACGACGTGAATGCTGAAGTGCGTGGCGATGGAGG
TGGCAGAGATGATCGTGGCTGGTTCTACGACACAGTGCGAGATCGGCAGA
ACAGGCTGTGGGCGGATTCGAGGGTCAGAAAGGGAGTCGAGCTTGCCCGA
AAGGGACAACATCAGATGCAGATCCCGACCGATCCCACGCAGGGTAAGAG
CGAAGAGGAGGCCGGACCAGTGGTGCACGAGCACTCCGATGCGTGGGGCT
TCGCGTGGATGCCCGCAATCGAAAACTTCGTTGAACAAGCCGTGTCGGAG
GATGAGTCGGACGACGACAGTCGCGACGGGGACGCCAATGCCACAGGCGA
CAAAAAAGCGTTGCCAAAAGCAGTCCGACGCGAGGAGGATACCGGGGTGG
AACTTGGTGACGTTACATCTTCCGGAAGATGCGGCCGAAAGCGTCGGAGG
CCTCGACCGCGATCGTACAACGAAACACTCTTGGCGGACAAAGCCTTCCA
CAACCCGCAAGCCTCTGAAACCATGGCCGATGCTTACGGCATCTTGCGCC
CAGCGTCTTTTGTGCTCGACGTTCGGGACGACGATCGGACGTTAGGGGTT
GTCGGGTCGGGAAAGGGGGCGACAGAGGGAAACGACGTGAATGCTGAAGT
GCGTGGCGATGGAGGTGGCAGAGATGATCGTGGCTGGTTCTACGACACAG
TGCGAGATCGGCAGAACAGGCTGTGGGCGGATTCGAGGGTCAGAAAGGGA
GTCGAGCTTGCCCGAAAGGGACAACATCAGGCTGCTGTCGACGTCTACAC
ACAAGCCTTGGGAATGTGCCCGGACCATGATGACGGTTTGGTTGCACGAG
GAGCCGCGTTTGCCACGACGGGTCGGTTACGACAAGCAACGCAAGACCTA
TCGAGAGCGCTCAGCCTCAACCCGCAAGCTGCTGTCGACGTCTACACACA
AGCCTTGGGAATGTGCCCGGACCATGATGACGGTTTGGTTGCACGAGGAG
CCGCGTTTGCCACGACGGGTCGGTTACGACAAGCAACGCAAGACCTATCG
AGAGCGCTCAGCCTCAACCCGCAA
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