mRNA_H-elongata_contig128798.2119.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128798.2119.1
Unique NamemRNA_H-elongata_contig128798.2119.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128798.2119.1 vs. uniprot
Match: D8LDG4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.010e-24
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:   16 HTHTXXXRYLNSPVTFDMTGEIVKAANTLLNFTGDNAIEGADSIPRDLIAEAKGLAFITFFKAS 207
            H+     RYLNSPVTFD+TGEI+KA+NTLLNFTGDN IEGADSIP+DLIA+A+GLAFITF KA 
Sbjct:  106 HSRASVERYLNSPVTFDLTGEILKASNTLLNFTGDNVIEGADSIPQDLIADARGLAFITFVKAG 169
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BLAST of mRNA_H-elongata_contig128798.2119.1 vs. uniprot
Match: A0A7S4DC62_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC62_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 2.460e-13
Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   37 RYLNSPVTFDMTGEIVKAANTLLNFTGDNAIEGADSIPRDLIAEAKGLAFITFFKASYIY 216
            RY N+P +F +  +I KA+ TLLNFT +N +EGAD++PR+L+ EA+G+A +TF KA + +
Sbjct:  131 RYFNAPFSFSLADQIKKASYTLLNFTAENQLEGADTLPRELLWEAEGIAILTFVKAGFFF 190
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BLAST of mRNA_H-elongata_contig128798.2119.1 vs. uniprot
Match: A0A835Z286_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z286_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.240e-6
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   40 YLNSPVTFDMTGEIVKAANTLLNFTGDNAIEGADSIPRDLIAEAKGLAFITFFKAS 207
            YLN P++F +  E+ KAA ++LNF     ++  +SIP +L+A AKGLAF+T  KA 
Sbjct:  182 YLNKPLSFTLGAEVRKAAYSVLNFMRTGVVQD-NSIPTELLARAKGLAFMTVLKAG 236
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BLAST of mRNA_H-elongata_contig128798.2119.1 vs. uniprot
Match: A0A1D1ZDG1_9ARAE (SH3 domain-containing protein PJ696.02 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZDG1_9ARAE)

HSP 1 Score: 49.3 bits (116), Expect = 4.790e-5
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:   43 LNSPVTFDMTGEIVKAANTLLNFTGDNAIEGA--DSIPRDLIAEAKGLAFITFFKASYIY 216
            +NSP+  D+  ++ KAA  L +FT    +EG   + IP+D+ A AKG+A  T  KA + +
Sbjct:   67 VNSPLPSDLVSQVQKAAKVLASFTDPEKVEGGLDNVIPKDVFANAKGIAIYTCIKAGFFW 126
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BLAST of mRNA_H-elongata_contig128798.2119.1 vs. uniprot
Match: M4BN30_HYAAE (FYVE-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN30_HYAAE)

HSP 1 Score: 48.5 bits (114), Expect = 9.470e-5
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   37 RYLNSPVTFDMTGEIVKAANTLLNFTGDNAIEGADSIPRDLIAEAKGLAFITFFKASYIY 216
            R +NSP ++ +  EI+KA  ++ NFT    ++   SIP  L+  AKG+AF+T  K  +++
Sbjct:  113 RLVNSPYSYTLKEEILKATYSIKNFTSQGIVKDR-SIPLPLLTHAKGIAFLTVIKMGFVF 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128798.2119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LDG4_ECTSI1.010e-2476.56FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S4DC62_HETAK2.460e-1350.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z286_9STRA2.240e-646.43FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A1D1ZDG1_9ARAE4.790e-538.33SH3 domain-containing protein PJ696.02 n=1 Tax=Ant... [more]
M4BN30_HYAAE9.470e-536.67FYVE-type domain-containing protein n=1 Tax=Hyalop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128798contigH-elongata_contig128798:1598..1819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue8.1e-21
Seed eggNOG ortholog2880.D8LDG4
KEGG koko:K20523
EggNOG free text desc.regulation of ruffle assembly
EggNOG OGsCOG2930@1,KOG1843@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFYVE zinc finger
Ec32 orthologEc-15_000720.1
Exons1
Model size222
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.0950584-CDS-H-elongata_contig128798:1597..18191622929766.0950584-CDS-H-elongata_contig128798:1597..1819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128798 1598..1819 -
1691679149.3786025-CDS-H-elongata_contig128798:1597..18191691679149.3786025-CDS-H-elongata_contig128798:1597..1819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128798 1598..1819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128798.2119.1prot_H-elongata_contig128798.2119.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128798 1598..1819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128798.2119.1

>prot_H-elongata_contig128798.2119.1 ID=prot_H-elongata_contig128798.2119.1|Name=mRNA_H-elongata_contig128798.2119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MCNLIHTHTHTHRYLNSPVTFDMTGEIVKAANTLLNFTGDNAIEGADSIP
RDLIAEAKGLAFITFFKASYIYI*
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mRNA from alignment at H-elongata_contig128798:1598..1819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128798.2119.1 ID=mRNA_H-elongata_contig128798.2119.1|Name=mRNA_H-elongata_contig128798.2119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig128798:1598..1819- (Himanthalia elongata Himel1 dioecious)
ATGTGCAATTTAATACACACACACACACACACACACAGGTACCTGAACTC
ACCGGTGACGTTCGATATGACGGGAGAGATTGTCAAGGCCGCCAACACGT
TGCTGAACTTCACGGGAGATAACGCGATCGAGGGAGCGGACAGCATCCCT
AGGGACCTCATTGCCGAGGCGAAGGGTCTTGCATTCATCACGTTCTTCAA
GGCAAGTTATATATATATATAA
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Coding sequence (CDS) from alignment at H-elongata_contig128798:1598..1819-

>mRNA_H-elongata_contig128798.2119.1 ID=mRNA_H-elongata_contig128798.2119.1|Name=mRNA_H-elongata_contig128798.2119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig128798:1598..1819- (Himanthalia elongata Himel1 dioecious)
ATGTGCAATTTAATACACACACACACACACACACACAGGTACCTGAACTC
ACCGGTGACGTTCGATATGACGGGAGAGATTGTCAAGGCCGCCAACACGT
TGCTGAACTTCACGGGAGATAACGCGATCGAGGGAGCGGACAGCATCCCT
AGGGACCTCATTGCCGAGGCGAAGGGTCTTGCATTCATCACGTTCTTCAA
GGCAAGTTATATATATATATAAATGTGCAATTTAATACACACACACACAC
ACACACACAGGTACCTGAACTCACCGGTGACGTTCGATATGACGGGAGAG
ATTGTCAAGGCCGCCAACACGTTGCTGAACTTCACGGGAGATAACGCGAT
CGAGGGAGCGGACAGCATCCCTAGGGACCTCATTGCCGAGGCGAAGGGTC
TTGCATTCATCACGTTCTTCAAGGCAAGTTATATATATATATAA
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