mRNA_H-elongata_contig128773.2118.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128773.2118.1
Unique NamemRNA_H-elongata_contig128773.2118.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A6H5L1Y5_9PHAE (MGS-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Y5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.060e-12
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    7 GTAVDKVKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAKA 141
            G AVD VKVTRALLSVSDK  LVELAT+L SHGVELLSTGGTAKA
Sbjct:   10 GAAVDTVKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKA 54
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A836CED7_9STRA (Putative bifunctional purine synthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.460e-10
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    7 GTAVDKVKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAKA 141
            G   D+VK+TRALLSVSDKA L+E A  L  HGVELLSTGGTAKA
Sbjct:   10 GDQADEVKITRALLSVSDKAGLIEFAKFLAQHGVELLSTGGTAKA 54
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A8F6DIS0_9SPHN (Bifunctional purine biosynthesis protein PurH n=1 Tax=Sphingosinicellaceae bacterium TaxID=2836944 RepID=A0A8F6DIS0_9SPHN)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-9
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   19 DKVKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAKA 141
            D++K+TRALLSVSDK  LVE+ TAL  HGVELLSTGGTA A
Sbjct:    3 DRIKITRALLSVSDKTGLVEIGTALARHGVELLSTGGTAMA 43
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A4P6FKG1_9SPHN (Bifunctional purine biosynthesis protein PurH n=3 Tax=Sphingomonadales TaxID=204457 RepID=A0A4P6FKG1_9SPHN)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-9
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   19 DKVKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAKA 141
            D+VKVTRALLSVSDK  L ELA AL  HGVEL+STGGTAKA
Sbjct:    3 DQVKVTRALLSVSDKTGLAELAQALARHGVELVSTGGTAKA 43
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A7S1UAS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAS9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.520e-9
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    7 GTAVDKVKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAK 138
            G A+D++ V RALLSVSDK  LV  AT L SHGVELLSTGGTAK
Sbjct:   10 GAALDEIPVRRALLSVSDKTGLVPFATKLASHGVELLSTGGTAK 53
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A514BWB5_9GAMM (Bifunctional purine biosynthesis protein PurH n=1 Tax=Lysobacter alkalisoli TaxID=2591633 RepID=A0A514BWB5_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 2.610e-9
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   25 VKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAKA 141
            VK+ RALLSVSDK  L+ELATAL  HGVELLSTGGTAKA
Sbjct:    6 VKIRRALLSVSDKTGLIELATALAGHGVELLSTGGTAKA 44
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A838KZY4_9SPHN (Bifunctional purine biosynthesis protein PurH n=1 Tax=Sphingomonas chungangi TaxID=2683589 RepID=A0A838KZY4_9SPHN)

HSP 1 Score: 59.3 bits (142), Expect = 4.870e-9
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   16 VDKVKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAKA 141
            +  VK+TRALLSVSDKA LVEL  AL  HGVELLSTGGTA+A
Sbjct:    1 MSNVKITRALLSVSDKAGLVELGQALARHGVELLSTGGTARA 42
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A516V5E1_9GAMM (Bifunctional purine biosynthesis protein PurH n=1 Tax=Lysobacter lycopersici TaxID=1324796 RepID=A0A516V5E1_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 4.870e-9
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:   25 VKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAKA 141
            VK+TRALLSVSDK  L++LA AL +HGVELLSTGGTAKA
Sbjct:   11 VKITRALLSVSDKTGLIDLARALAAHGVELLSTGGTAKA 49
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A2U1RSN7_9PROT (Bifunctional purine biosynthesis protein PurH n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A2U1RSN7_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 6.660e-9
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   19 DKVKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAK 138
            D++++ RALLSVSDKA +VE A AL SHGVELLSTGGTAK
Sbjct:    4 DQIRIKRALLSVSDKAGIVEFARALASHGVELLSTGGTAK 43
[Close]
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Match: A0A0A0EKL8_9GAMM (Bifunctional purine biosynthesis protein PurH n=2 Tax=Lysobacter TaxID=68 RepID=A0A0A0EKL8_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 6.660e-9
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   25 VKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAKA 141
            VK+ RALLSVSDK  L+ELATAL  HGV+LLSTGGTAKA
Sbjct:    6 VKIRRALLSVSDKTGLIELATALAGHGVQLLSTGGTAKA 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128773.2118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Y5_9PHAE1.060e-1286.67MGS-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A836CED7_9STRA7.460e-1073.33Putative bifunctional purine synthesis protein n=1... [more]
A0A8F6DIS0_9SPHN1.910e-975.61Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A4P6FKG1_9SPHN1.910e-980.49Bifunctional purine biosynthesis protein PurH n=3 ... [more]
A0A7S1UAS9_9STRA2.520e-972.73Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A514BWB5_9GAMM2.610e-982.05Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A838KZY4_9SPHN4.870e-976.19Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A516V5E1_9GAMM4.870e-979.49Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A2U1RSN7_9PROT6.660e-975.00Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A0A0EKL8_9GAMM6.660e-979.49Bifunctional purine biosynthesis protein PurH n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128773contigH-elongata_contig128773:1429..1569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue5.4e-10
Seed eggNOG ortholog2880.D8LKS8
Preferred nameATIC
KEGG rclassRC00026,RC00263,RC00456
KEGG koko:K00602,ko:K06943
KEGG ReactionR01127,R04560
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,ko03008,map00230,map00670,map01100,map01110,map01130,map01523,map03008
KEGG ModuleM00048
GOsGO:0000003,GO:0003006,GO:0003360,GO:0003674,GO:0003824,GO:0003937,GO:0004643,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006760,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009108,GO:0009116,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009235,GO:0009259,GO:0009260,GO:0009396,GO:0009611,GO:0009653,GO:0009987,GO:0010035,GO:0015980,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0021537,GO:0021543,GO:0021549,GO:0021987,GO:0022037,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030435,GO:0030437,GO:0030900,GO:0030902,GO:0031099,GO:0031100,GO:0032501,GO:0032502,GO:0032505,GO:0033013,GO:0034293,GO:0034641,GO:0034654,GO:0042060,GO:0042221,GO:0042398,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0043935,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045333,GO:0046040,GO:0046390,GO:0046394,GO:0046452,GO:0046483,GO:0046653,GO:0046654,GO:0046983,GO:0048468,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051188,GO:0051321,GO:0051704,GO:0055086,GO:0055114,GO:0060322,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1903046
EggNOG free text desc.IMP cyclohydrolase activity
EggNOG OGsCOG0138@1,KOG2555@2759
EC2.1.2.3,3.5.4.10
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.040956-CDS-H-elongata_contig128773:1428..15691622929766.040956-CDS-H-elongata_contig128773:1428..1569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128773 1429..1569 +
1691679149.364005-CDS-H-elongata_contig128773:1428..15691691679149.364005-CDS-H-elongata_contig128773:1428..1569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128773 1429..1569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128773.2118.1prot_H-elongata_contig128773.2118.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128773 1429..1569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128773.2118.1

>prot_H-elongata_contig128773.2118.1 ID=prot_H-elongata_contig128773.2118.1|Name=mRNA_H-elongata_contig128773.2118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
PAGTAVDKVKVTRALLSVSDKAKLVELATALVSHGVELLSTGGTAKA
back to top

mRNA from alignment at H-elongata_contig128773:1429..1569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128773.2118.1 ID=mRNA_H-elongata_contig128773.2118.1|Name=mRNA_H-elongata_contig128773.2118.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig128773:1429..1569+ (Himanthalia elongata Himel1 dioecious)
CCAGCAGGCACCGCCGTAGATAAGGTGAAGGTCACGCGCGCGCTTTTGTC
GGTGTCAGACAAGGCTAAGCTTGTGGAGCTGGCCACGGCTCTCGTCTCTC
ACGGCGTTGAGCTGCTCTCGACCGGAGGGACTGCGAAGGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig128773:1429..1569+

>mRNA_H-elongata_contig128773.2118.1 ID=mRNA_H-elongata_contig128773.2118.1|Name=mRNA_H-elongata_contig128773.2118.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig128773:1429..1569+ (Himanthalia elongata Himel1 dioecious)
CCAGCAGGCACCGCCGTAGATAAGGTGAAGGTCACGCGCGCGCTTTTGTC
GGTGTCAGACAAGGCTAAGCTTGTGGAGCTGGCCACGGCTCTCGTCTCTC
ACGGCGTTGAGCTGCTCTCGACCGGAGGGACTGCGAAGGCGCCAGCAGGC
ACCGCCGTAGATAAGGTGAAGGTCACGCGCGCGCTTTTGTCGGTGTCAGA
CAAGGCTAAGCTTGTGGAGCTGGCCACGGCTCTCGTCTCTCACGGCGTTG
AGCTGCTCTCGACCGGAGGGACTGCGAAGGCG
back to top