mRNA_H-elongata_contig128760.2117.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128760.2117.1
Unique NamemRNA_H-elongata_contig128760.2117.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.730e-25
Identity = 54/148 (36.49%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   22 KKLTNGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMAS-------KGKARRGDEDYDILHQIRRLESILNKQWSTICDPGRWISVDEKMVKNKGRFCAGVQRHMPGKPIKHG 444
            K  T G    P+      HI  ++G+ I MG+     M+ HW      D+  VRECM+RD F L+YCRF H +         G+ +  + ++D    IR LE ILN  W+   D  +W+  DE+MVK    F   + RH P KPI HG
Sbjct:  175 KTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTHMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHG 322          
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 9.220e-25
Identity = 55/150 (36.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   16 VLKKLTNGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMAS-------KGKARRGDEDYDILHQIRRLESILNKQWSTICDPGRWISVDEKMVKNKGRFCAGVQRHMPGKPIKHG 444
            V K  T G    P+      HI  ++G+ I MG+     M+ HW      D+  VRECM+RD F L+YCRF H +         G+ +  + ++D    IR LE ILN  W+   D  +W+  DE+MVK    F   + RH P KPI HG
Sbjct:  464 VEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHG 613          
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 9.720e-25
Identity = 55/150 (36.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   16 VLKKLTNGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMAS-------KGKARRGDEDYDILHQIRRLESILNKQWSTICDPGRWISVDEKMVKNKGRFCAGVQRHMPGKPIKHG 444
            V K  T G    P+      HI  ++G+ I MG+     M+ HW      D+  VRECM+RD F L+YCRF H +         G+ +  + ++D    IR LE ILN  W+   D  +W+  DE+MVK    F   + RH P KPI HG
Sbjct:  680 VEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHG 829          
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.100e-24
Identity = 53/145 (36.55%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   31 TNGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMAS-------KGKARRGDEDYDILHQIRRLESILNKQWSTICDPGRWISVDEKMVKNKGRFCAGVQRHMPGKPIKHG 444
            T G    P+      HI  ++G+ I MG      ++ HW      D+  VRECM+RD F L+YCRF H +         G+ +  + ++D    IR LE ILN  W+   D  +W+S DE+MVK    F   + RH P KPI HG
Sbjct:  530 TLGMVTLPEPAFARKHIYGMLGITITMGFTKKTRIRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPHWTGEDKTPNPEFDSKWHIRELEDILNNAWTDNMDFNQWLSYDEQMVKTVSTFANYLMRHSPKKPITHG 674          
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 8.910e-18
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   22 KKLTNGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKGKARR-----GDEDYDILHQIR 297
            +K   G S+WP  GIT + +  VI +++ +G+  LP M  HW     +D++ VR C+ RD FLLIY RFFHMAS G   R      +  +D LH IR
Sbjct:  536 QKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIR 632          
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.500e-16
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   22 KKLTNGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKGKARR-----GDEDYDILHQIR 297
            KK   G S+WP  GIT   +  VIG+++ +G+  LP +  HW     +D++ VR C+ RD  LLIY RFFHMAS G  +R      +  +  LH IR
Sbjct:  742 KKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIR 838          
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: A0A816EN84_ADIRI (Hypothetical protein (Fragment) n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A816EN84_ADIRI)

HSP 1 Score: 81.3 bits (199), Expect = 3.210e-15
Identity = 42/123 (34.15%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   79 INAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKG-KARRGDEDYDILHQIRRLESILNKQWSTICDPGRWISVDEKMVKNKGRFCAGVQRHMPGKPIKHG 444
            I + +GL+ILMGI NLP MK +W    ++    +   M+R+ FL I+    H+A+   +  RG ++Y  +++I+    IL + +      GR+ ++DE M+K KGR  + +++++P KPIK G
Sbjct:  109 IESFLGLIILMGINNLPNMKLYWSNDMVFQNTFISSIMSRNRFLQIFYNL-HLANNSLEPERGSKEYSKIYKIKNFTDILRENFKKNYSFGRYGTIDESMIKFKGR--SSLKQYLPLKPIKRG 228          
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: A0A8B8E383_CRAVI (piggyBac transposable element-derived protein 4-like n=4 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8E383_CRAVI)

HSP 1 Score: 78.2 bits (191), Expect = 6.250e-15
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   34 NGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKG-KARRGDEDYDILHQIRRLESILNKQWSTICDPGRWISVDEKMVKNKGRFCAGVQRHMPGKPIKHG 444
            +G+  W D   T+  + A +GL ILMGI  LP    +W + +       +E MT   F  I  R+FH+     +  RG + +D LH+IR +       + +  +P +  S+DE M+K KGRF A  +++MP KP+K G
Sbjct:   49 SGAQGWVDT--TIGEMKAFLGLQILMGIVQLPRYTMYWSSDKYIGNAGFQETMTLKRFEKI-SRYFHLNDNTTQGPRGTQGFDRLHKIRPVLDATRTTFKSEMNPPQQQSIDEGMIKYKGRFFA--RQYMPSKPVKRG 181          
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: UPI000678A1B3 (piggyBac transposable element-derived protein 4-like n=3 Tax=Papilio xuthus TaxID=66420 RepID=UPI000678A1B3)

HSP 1 Score: 80.5 bits (197), Expect = 7.940e-15
Identity = 46/148 (31.08%), Postives = 79/148 (53.38%), Query Frame = 1
Query:    1 NSGSIVLKKLTNGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKGKARRGDEDYDILHQIRRLESILNKQWSTICDPGRWISVDEKMVKNKGRFCAGVQRHMPGKPIKHG 444
            N+ S+V     N    W D  +T   I    G++I+MGI  LPE++ +W    +Y+ R ++  M RD FL I  ++ H A+  +  + D     L +IR++  +L + ++T   PG+ I +DE M+  +GR     ++++PGK  K G
Sbjct:  138 NNDSMVSSSTRNHRRIWND--VTGNEIRNFFGILIIMGINRLPEIRLYWSKNPLYENRLIKSTMKRDRFLFIL-KYLHFANNEEVPKDDR----LKKIRKILDLLIESYATTLRPGKEIVIDESMLPWRGRLI--FRQYIPGKRHKFG 276          
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Match: A0A8B8BRJ7_CRAVI (piggyBac transposable element-derived protein 4-like isoform X2 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BRJ7_CRAVI)

HSP 1 Score: 77.4 bits (189), Expect = 1.160e-14
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   34 NGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKG-KARRGDEDYDILHQIRRLESILNKQWSTICDPGRWISVDEKMVKNKGRFCAGVQRHMPGKPIKHG 444
            +G+  W D   T+  + A +GL ILMGI  LP    +W + +       +E MT   F  I  R+FH+     +  RG + +D +H+IR +       + +  +P +  S+DE M+K KGRF A  +++MP KP+K G
Sbjct:   49 SGAQGWVDT--TIGEMKAFLGLQILMGIVQLPRYTMYWSSDKYIGNAGFQETMTLKRFEKI-SRYFHLNDNTTQGPRGTQGFDSVHKIRPVLDATRTTFKSEMNPPQQQSIDEGMIKYKGRFFA--RQYMPSKPVKRG 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128760.2117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIE0_9PHAE1.730e-2536.49DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNV0_9PHAE9.220e-2536.67DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE9.720e-2536.67HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5K2B4_9PHAE3.100e-2436.55DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5L3T1_9PHAE8.910e-1842.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JFU5_9PHAE1.500e-1641.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A816EN84_ADIRI3.210e-1534.15Hypothetical protein (Fragment) n=1 Tax=Adineta ri... [more]
A0A8B8E383_CRAVI6.250e-1534.06piggyBac transposable element-derived protein 4-li... [more]
UPI000678A1B37.940e-1531.08piggyBac transposable element-derived protein 4-li... [more]
A0A8B8BRJ7_CRAVI1.160e-1433.33piggyBac transposable element-derived protein 4-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128760contigH-elongata_contig128760:390..1096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score72.8
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog7029.ACYPI068051-PA
EggNOG free text desc.Transposase IS4
EggNOG OGs2CXJS@1,2RY1K@2759,39VGM@33154,3BJCI@33208,3CWQ6@33213,3SMMG@50557,41Z93@6656
COG Functional cat.S
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929765.9813075-CDS-H-elongata_contig128760:389..6891622929765.9813075-CDS-H-elongata_contig128760:389..689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128760 390..689 +
1691679149.3428435-CDS-H-elongata_contig128760:389..6891691679149.3428435-CDS-H-elongata_contig128760:389..689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128760 390..689 +
1622929765.9998562-CDS-H-elongata_contig128760:952..10961622929765.9998562-CDS-H-elongata_contig128760:952..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128760 953..1096 +
1691679149.3550966-CDS-H-elongata_contig128760:952..10961691679149.3550966-CDS-H-elongata_contig128760:952..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128760 953..1096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128760.2117.1prot_H-elongata_contig128760.2117.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128760 390..1096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128760.2117.1

>prot_H-elongata_contig128760.2117.1 ID=prot_H-elongata_contig128760.2117.1|Name=mRNA_H-elongata_contig128760.2117.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
NSGSIVLKKLTNGSSAWPDDGITLTHINAVIGLVILMGIQNLPEMKTHWD
TREMYDFRNVRECMTRDFFLLIYCRFFHMASKGKARRGDEDYDILHQIRR
LESILNKQWSTICDPGRWISVDEKMVKNKGRFCAGVQRHMPGKPIKHG
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mRNA from alignment at H-elongata_contig128760:390..1096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128760.2117.1 ID=mRNA_H-elongata_contig128760.2117.1|Name=mRNA_H-elongata_contig128760.2117.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=707bp|location=Sequence derived from alignment at H-elongata_contig128760:390..1096+ (Himanthalia elongata Himel1 dioecious)
AATTCTGGAAGTATAGTTTTAAAAAAGTTGACGAACGGCAGTTCTGCGTG GCCCGATGACGGCATAACTCTGACTCACATAAACGCCGTGATCGGGCTGG TAATACTGATGGGAATCCAGAACCTTCCTGAGATGAAGACTCATTGGGAT ACGCGTGAGATGTATGACTTTCGGAACGTCCGGGAGTGCATGACGCGCGA CTTCTTCCTACTAATATATTGTCGATTTTTCCACATGGCCTCGAAAGGCA AAGCGAGACGTGGCGACGAGGACTACGACATATTACACCAAATAAGGCGA GTATTGACAGAAATGATTGGGTGGTGATGCAATCTATACGTTCGTCGACA GACCCTTGATGGTGACCACATCGGCGCTTCCGCATGTCCATCACATTTTT TCCATAATGAATACCTGGTACATTTAAATTAGTTTTATCGTGTTTTTTTT TACGAACGAATGCTTTTGAGTTCAAGCACTATGTACAACTTTTTTTATCA TCACCCTGGCTGACTTGTGCCTTTCTTCAATCGTGTTCGCTTTATATCGT CGGCGGCAGAGAGTTAGAGTCTATCCTGAACAAGCAATGGAGCACGATCT GCGATCCGGGAAGATGGATATCTGTTGACGAGAAAATGGTCAAGAACAAG GGGCGTTTTTGCGCGGGTGTACAGCGTCATATGCCCGGCAAGCCCATCAA ACACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig128760:390..1096+

>mRNA_H-elongata_contig128760.2117.1 ID=mRNA_H-elongata_contig128760.2117.1|Name=mRNA_H-elongata_contig128760.2117.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig128760:390..1096+ (Himanthalia elongata Himel1 dioecious)
AATTCTGGAAGTATAGTTTTAAAAAAGTTGACGAACGGCAGTTCTGCGTG
GCCCGATGACGGCATAACTCTGACTCACATAAACGCCGTGATCGGGCTGG
TAATACTGATGGGAATCCAGAACCTTCCTGAGATGAAGACTCATTGGGAT
ACGCGTGAGATGTATGACTTTCGGAACGTCCGGGAGTGCATGACGCGCGA
CTTCTTCCTACTAATATATTGTCGATTTTTCCACATGGCCTCGAAAGGCA
AAGCGAGACGTGGCGACGAGGACTACGACATATTACACCAAATAAGGCGA
AATTCTGGAAGTATAGTTTTAAAAAAGTTGACGAACGGCAGTTCTGCGTG
GCCCGATGACGGCATAACTCTGACTCACATAAACGCCGTGATCGGGCTGG
TAATACTGATGGGAATCCAGAACCTTCCTGAGATGAAGACTCATTGGGAT
ACGCGTGAGATGTATGACTTTCGGAACGTCCGGGAGTGCATGACGCGCGA
CTTCTTCCTACTAATATATTGTCGATTTTTCCACATGGCCTCGAAAGGCA
AAGCGAGACGTGGCGACGAGGACTACGACATATTACACCAAATAAGGCGA
TTAGAGTCTATCCTGAACAAGCAATGGAGCACGATCTGCGATCCGGGAAG
ATGGATATCTGTTGACGAGAAAATGGTCAAGAACAAGGGGCGTTTTTGCG
CGGGTGTACAGCGTCATATGCCCGGCAAGCCCATCAAACACGGTTTAGAG
TCTATCCTGAACAAGCAATGGAGCACGATCTGCGATCCGGGAAGATGGAT
ATCTGTTGACGAGAAAATGGTCAAGAACAAGGGGCGTTTTTGCGCGGGTG
TACAGCGTCATATGCCCGGCAAGCCCATCAAACACGGT
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