mRNA_H-elongata_contig1287.2112.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1287.2112.1
Unique NamemRNA_H-elongata_contig1287.2112.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: D7FKR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR8_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 2.780e-150
Identity = 223/362 (61.60%), Postives = 277/362 (76.52%), Query Frame = 1 
Query:    1 EETDKEINVKARMPAWTKGKSVLLDLNVNHIRLALKEEEDKPIIEGALRGAILLDGSYWTMESLADNGKMLYLTLEKAPYVTGLGPWMGVVVGEKLVDSNYSEDDKAAEVAAMNQGMGTDMPSPSGEAYTASKSGAPPPTGEVDEKGFCRDVLAVQGIDVAMVARQVPADGNALFSAAAISETYIQTGQHAVVPSQDVETQAKGLRQRTMDFLEKAYEANEPLLLQGETMPAKQFVAAQARANSMGQPEEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYELQSTGRRRVPLHIVHDYTVLFGLRVLGRFGEPLFSTERPIYLLSTYSKFPALDPGSQTTAGNHYVALFLPDDVTEEKRQK 1086
            +ETDKE+NVKAR+PAW KGKSV+LD+   H++L LKEEE  PIIEG LRGAIL+DGSYWTME+L DNGKMLYLTLEKAP +TGLGPWMGVV GEK V+S+Y E+DKAAE+AAM             +    ++SG P  TG VDE GFCRD+LAVQ +  AMVARQVP +GNALFSA AIS+ +I++G+H    S ++ET AK LRQ+T+D+L KAY+ N P+ + GE M A+ FVAAQA+ANSM   +EY +AMR DTMWGGGGEVVGLT++LKRP+HVY+L STGRR             FGLRV+GRFG PL++ ERPI+++STY++FP LDPGSQ+  GNHYVAL+  +DV E+ + K
Sbjct:   71 DETDKEVNVKARLPAWAKGKSVVLDMTNTHVKLFLKEEESTPIIEGDLRGAILMDGSYWTMETLDDNGKMLYLTLEKAPQLTGLGPWMGVVQGEKQVNSDYPEEDKAAEIAAMAHEE---------KKAQDAESGTPKHTGVVDEDGFCRDLLAVQAMSGAMVARQVPVNGNALFSAVAISKWFIESGEHPDASSPEIETIAKDLRQKTLDYLTKAYKENAPIYMSGEYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVSTGRR-------------FGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYPYEDVPEKNKGK 410
[Close]
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: A0A835YZQ7_9STRA (OTU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZQ7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.570e-29
Identity = 79/221 (35.75%), Postives = 114/221 (51.58%), Query Frame = 1 
Query:  424 EVDEKGFCRDVLAVQGIDVAMVARQVPADGNALFSAAAISETYIQTGQHAVVPSQDVETQAKGLRQRTMDFLEKAYEANEPLLLQG-ETMPAKQFVAAQARANSMGQPEEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYELQSTGRRRVPLHIVHDYTVLFGLRVLGRFGEPLFSTE-RPIYLLSTYSKFPALDPGSQTTAGNHYVALF--LPDDVTEE 1074
            ++   GF  +   V+G+ V M  RQVP DGN LF + +    +  T  H  +   D+  ++  LR+  +D+L    + +  L L+G ET+P  + +   A   +M   + Y K MR   +WGGG E+V L+N L+RPIHVYEL +   RR            F  R +  FG PLF  E  PI++LS  ++FP L PG Q   GNH++ LF   P D   E
Sbjct:   32 QIQRDGFLTEAFPVEGLPVQMQVRQVPGDGNCLFHSISACLEHADTSSHPSLHLNDLLPKSAVLRKMAVDYL--VADPDRVLYLEGGETVPVNELLTVVATQYNM-TVDAYCKHMRLPAVWGGGPEIVALSNCLRRPIHVYELAAGAGRR------------FCFRRMACFGSPLFDGECEPIHILSADARFPNLAPGQQLANGNHFLCLFPCAPSDALSE 237
[Close]
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: D8LB24_ECTSI (OTU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB24_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.890e-28
Identity = 79/216 (36.57%), Postives = 113/216 (52.31%), Query Frame = 1 
Query:  424 EVDEKGFCRDVLAVQGIDVAMVARQVPADGNALFSAAAISETYIQTGQHAVVPSQDVETQAKGLRQRTMDFLEKAYEANEPLLLQGE-TMPAKQFVAAQARANSMGQPEEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYELQSTGRRRVPLHIVHDYTVLFGLRVLGRFGEPLFSTERPIYLLSTYSKFPALDPGSQTTAGNHYVALF-LPDDV 1065
            ++   GF  D  AVQGI   M  RQVP DGN LF A +    +   G H  +   ++  ++  LR+  +D+L       + L L+ E ++P  + ++  A   +M   E Y + MR  ++WGGG E+V L+N L RPIHVYEL S G             V F  R +  FG P F  ++ I++LS  S+FP L PG Q   GNH++ALF  P+ V
Sbjct:   30 KIKRDGFLTDSFAVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLDLSELMPKSAALRKVAVDYL--VDNLKKTLYLEKEESVPVYELLSVVAAQYNM-TAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELASNG-------------VSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFPCPETV 229
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BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: A0A7S3L1U5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1U5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.730e-28
Identity = 75/189 (39.68%), Postives = 109/189 (57.67%), Query Frame = 1 
Query:  493 RQVPADGNALFSAAAISETYIQTGQHAVVPS--QDVETQAKGLRQRTMDFLEKAYEANEPLLLQG-ETMPAKQFVAAQARANSMGQPEEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYELQSTGRRRVPLHIVHDYTVLFGLRVLGRFGEPLFSTERPIYLLSTYSKFPALDPGSQTTAGNHYVALF 1050
            RQVP DGN LF + ++   +   G H  V    +D+ T ++ LRQ+ +D L + ++    L LQG ET+ + + V A A+   +   EEY +AM  D +WGGG E+V L+NLL+RPIHVYEL ++     P          F LR +  FG P F     +++LS  S+FP L PG Q +AGNH++A+F
Sbjct:   60 RQVPGDGNCLFHSISLCLQHATNGTHWDVSKCLEDLYTHSQTLRQQAVDCLRQPHKR---LFLQGRETLKSGELVQAAAQQYGL-TSEEYCQAMEQDCVWGGGPEIVALSNLLQRPIHVYELATSSSSSKP-----SSGNTFVLRRMACFGSPRFDRREALHILSADSRFPDLLPGEQLSAGNHFLAVF 239
[Close]
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: A0A7S1V4T9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4T9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.210e-25
Identity = 73/190 (38.42%), Postives = 106/190 (55.79%), Query Frame = 1 
Query:  493 RQVPADGNALFSAAAISETYIQTGQHAVVPSQDV---ETQAKGLRQRTMDFLEKAYEANEPLLLQG-ETMPAKQFVAAQARANSMGQPEEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYELQSTGRRRVPLHIVHDYTVLFGLRVLGRFGEPLFSTERPIYLLSTYSKFPALDPGSQTTAGNHYVALF 1050
            RQVP DGN LF A ++     + G H   P  D+   +  +K LRQR +D+++K  +    L LQ  E + AK  + + A    +   +EY + MR D+ WGGG E+V L+N+L+RPIHVYEL +  R       V D    F LR +  FG P F  +  +++LS  S+FP + PG Q   GNH++A+F
Sbjct:    2 RQVPGDGNCLFHALSVCLYKSEHGCH--FPFGDLGKLQQCSKSLRQRAVDYVKK--KPRRLLFLQAREFLRAKDLIDSSAAQYGV-TGDEYLETMRQDSTWGGGPEIVALSNMLRRPIHVYELYAPNRN------VQD----FRLRRMCCFGSPKFDRQEALHILSADSRFPDVQPGKQKKEGNHFLAIF 176
[Close]
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: A0A1Z5JTL4_FISSO (OTU domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTL4_FISSO)

HSP 1 Score: 112 bits (280), Expect = 1.110e-24
Identity = 79/247 (31.98%), Postives = 124/247 (50.20%), Query Frame = 1 
Query:  415 PTGEVDEKGFCRDVL--------------AVQGIDVAMVARQVPADGNALFSAAAISETYIQTGQHAVVPSQ--DVETQAKGLRQRTMDFLEKAYEANEPLLLQG-ETMPAKQFVAAQARANSMGQPEEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYEL--------QSTGRRRVPLHIVHDYTVLFGLRVLGRFGEPLFSTERPIYLLSTYSKFPALDPGSQTTAGNHYVALFLPDDVTEEKR 1080
            P+  +DEKGF + +                V   +     RQVP DGN LF + ++   +   G H  +P++  ++   ++ LR + +  L +       L LQG E+M A + V + A+   +  PEEY   M  D +WGGG E+V L+N+L+RPIHVYEL         +T + + P  I         L+ +  FG P F  +R +++LS  S+FP + PG Q  AGNH++++F   D+   KR
Sbjct:   51 PSALIDEKGFLKGLFRRKKGDWEEEFPMRTVYHTNHPCQIRQVPGDGNCLFHSLSLCLQHAVNGTHWDMPNRLDELYEHSRSLRAKAVACLRQN---KRKLFLQGKESMRAIELVTSAAQQYDL-TPEEYCATMEEDCVWGGGPEIVALSNILQRPIHVYELAMESPGAEDATDQPKKPTFI---------LKRMACFGSPRFDGKRALHILSADSRFPDIQPGEQMVAGNHFLSVF--PDIKRRKR 282
[Close]
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: A0A7S3Q7L5_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7L5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.000e-19
Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:  604 AKGLRQRTMDFLEKAYEANEPLLLQG-ETMPAKQFVAAQARANSMGQPEEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYELQSTGRRRVPLHIVHDYTVL-------------------------FGLRVLGRFGEPLFSTERPIYLLSTYSKFPALDPGSQTTAGNHYVALFLPDDVTEEKRQK 1086
            ++ LR + +  L  ++   + L LQG E + AK  V A A   ++   EEY   M+ D++WGGG E+VGL N LKRPIHVYEL S                                          F LR +  FG P F  + P+++LS  S+FP L+PG Q ++GNH++A+F    + E KR++
Sbjct:  247 SRHLRSQAVHML--SHHPRKLLFLQGNEYLRAKDLVTAAAAQYNL-SAEEYCNQMKKDSVWGGGPEIVGLCNYLKRPIHVYELSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRLRRMACFGSPKFDRKEPLHILSADSRFPDLEPGQQLSSGNHFLAIFPKGVIAEVKREQ 430
[Close]
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: A0A7S2EWL6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EWL6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.140e-17
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:  745 EEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYELQSTGRRRVPLHIVHDYTVLFGLRVLGRFGEPLFSTERPIYLLSTYSKFPALDPGSQTTAGNHYVALF 1050
            E+Y   M+ ++ WGGG E+V L N+LKRPIHVYEL +                 F LR +  FG P F    P+++LS  S+FP + PG Q T+GNH+ A+F
Sbjct:    4 EKYCDLMKRESYWGGGPEIVALCNVLKRPIHVYELTAVTDAEADDGSKSRSGSQFRLRRMACFGSPKFDRREPLHILSADSRFPDVTPGRQMTSGNHFFAMF 105
[Close]
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: A0A7S3Q5V5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5V5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 8.300e-17
Identity = 66/177 (37.29%), Postives = 86/177 (48.59%), Query Frame = 1 
Query:  655 ANEPLLLQGETM--PAKQFVAAQARANSMGQPEEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYELQST----------------GRRRVP----LHIV-------HDYTVL----FGLRVLGRFGEPLFSTERPIYLLSTYSKFPALDPGSQTTAGNHYVALFLPDDVTEEKRQK 1086
            +N+PL LQG     P +    A ++    GQ  EY   M+ + +WGGG E+VGL N LKRPIHVYEL S                 G +R P    L  V       H  T      F LR +  FG P F    P+++LS   +FP L PG Q +AGNH++ALF      + K+QK
Sbjct:  272 SNKPLFLQGSEFLRPKELLHVASSQYGMSGQ--EYCDQMKHNGVWGGGPEIVGLCNYLKRPIHVYELISMKPKCKIKIRPRGYGLLGHKRSPSGEGLEDVEYSDDCSHGTTSSTKPEFRLRRMACFGSPKFDHREPLHILSADCRFPDLTPGLQASAGNHFMALFPYSSPLKIKKQK 446
[Close]
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Match: A0A7S4EBY6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBY6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.000e-16
Identity = 77/249 (30.92%), Postives = 112/249 (44.98%), Query Frame = 1 
Query:  427 VDEKGFCRDVLAVQGIDVA-----------------MVARQVPADGNALFSAAAISETYIQTGQHAVVPSQDVETQAKGLRQRTMDFLEKAYEANEPLLLQG--ETMPAKQFVAAQARANSMGQPEEYFKAMRADTMWGGGGEVVGLTNLLKRPIHVYEL------QSTGRRRVPLHIVHDY--TVLFGLRVLGRFGEPLFSTERP-IYLLSTYSKFPALDPGSQTTAGNHYVALFLPDDVTEEKRQKA 1089
            +D  GF RD+L V   D +                 + ARQVP DG  LF   +        G H  +  + + +Q+  LR R +D LE   +  +P L  G  E M A Q +   A   +  + +EY   +R    WGGG E+V L+N L RPIH+YEL          R+ +             + ++ +  FG P +S   P I++LS  S+FP L P  Q   GNH++ LF  D   +E R+ A
Sbjct:   74 IDGDGFLRDLLPVLDYDESQENVTTKTPTRGRARGYLRARQVPGDGACLFHTLSAGLWESVNGTHHPMDRKVLRSQSLRLRARAIDVLE---DRRDPKLYMGDNEYMKASQLLEMAAEQAACAK-DEYCAKLRDPRAWGGGPEIVALSNALSRPIHIYELVWASADAPCARKNLRGGAADSAPNAPRWCVQCIAEFGTPKWSRRYPPIHVLSCDSRFPHLQPEQQLEQGNHFLLLFECDP--QEAREAA 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1287.2112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FKR8_ECTSI2.780e-15061.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YZQ7_9STRA2.570e-2935.75OTU domain-containing protein n=1 Tax=Tribonema mi... [more]
D8LB24_ECTSI1.890e-2836.57OTU domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3L1U5_9STRA3.730e-2839.68Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1V4T9_9STRA2.210e-2538.42Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5JTL4_FISSO1.110e-2431.98OTU domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A7S3Q7L5_9STRA3.000e-1933.69Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2EWL6_9STRA2.140e-1742.16Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3Q5V5_9STRA8.300e-1737.29Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4EBY6_9STRA3.000e-1630.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1287contigH-elongata_contig1287:753..6198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.9
Seed ortholog evalue3.6e-122
Seed eggNOG ortholog2880.D7FKR8
EggNOG free text desc.OTU-like cysteine protease
EggNOG OGs2BVCW@1,2S253@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-21_001870.1
Exons10
Model size1094
Cds size1092
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1287.2112.1prot_H-elongata_contig1287.2112.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1287 753..6198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929765.332306-CDS-H-elongata_contig1287:752..8871622929765.332306-CDS-H-elongata_contig1287:752..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 753..887 +
1691679149.0145767-CDS-H-elongata_contig1287:752..8871691679149.0145767-CDS-H-elongata_contig1287:752..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 753..887 +
1622929765.344573-CDS-H-elongata_contig1287:1253..13021622929765.344573-CDS-H-elongata_contig1287:1253..1302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 1254..1302 +
1691679149.0233858-CDS-H-elongata_contig1287:1253..13021691679149.0233858-CDS-H-elongata_contig1287:1253..1302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 1254..1302 +
1622929765.3545954-CDS-H-elongata_contig1287:1708..18421622929765.3545954-CDS-H-elongata_contig1287:1708..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 1709..1842 +
1691679149.0307608-CDS-H-elongata_contig1287:1708..18421691679149.0307608-CDS-H-elongata_contig1287:1708..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 1709..1842 +
1622929765.3796728-CDS-H-elongata_contig1287:2492..25561622929765.3796728-CDS-H-elongata_contig1287:2492..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 2493..2556 +
1691679149.0386019-CDS-H-elongata_contig1287:2492..25561691679149.0386019-CDS-H-elongata_contig1287:2492..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 2493..2556 +
1622929765.393301-CDS-H-elongata_contig1287:2925..30411622929765.393301-CDS-H-elongata_contig1287:2925..3041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 2926..3041 +
1691679149.0459309-CDS-H-elongata_contig1287:2925..30411691679149.0459309-CDS-H-elongata_contig1287:2925..3041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 2926..3041 +
1622929765.4066322-CDS-H-elongata_contig1287:3594..37171622929765.4066322-CDS-H-elongata_contig1287:3594..3717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 3595..3717 +
1691679149.0612276-CDS-H-elongata_contig1287:3594..37171691679149.0612276-CDS-H-elongata_contig1287:3594..3717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 3595..3717 +
1622929765.420996-CDS-H-elongata_contig1287:3865..40031622929765.420996-CDS-H-elongata_contig1287:3865..4003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 3866..4003 +
1691679149.0739613-CDS-H-elongata_contig1287:3865..40031691679149.0739613-CDS-H-elongata_contig1287:3865..4003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 3866..4003 +
1622929765.4331164-CDS-H-elongata_contig1287:4572..47181622929765.4331164-CDS-H-elongata_contig1287:4572..4718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 4573..4718 +
1691679149.0831997-CDS-H-elongata_contig1287:4572..47181691679149.0831997-CDS-H-elongata_contig1287:4572..4718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 4573..4718 +
1622929765.4448376-CDS-H-elongata_contig1287:5031..51151622929765.4448376-CDS-H-elongata_contig1287:5031..5115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 5032..5115 +
1691679149.0940754-CDS-H-elongata_contig1287:5031..51151691679149.0940754-CDS-H-elongata_contig1287:5031..5115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 5032..5115 +
1622929765.4623322-CDS-H-elongata_contig1287:6095..61981622929765.4623322-CDS-H-elongata_contig1287:6095..6198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 6096..6198 +
1691679149.1038713-CDS-H-elongata_contig1287:6095..61981691679149.1038713-CDS-H-elongata_contig1287:6095..6198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 6096..6198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1287.2112.1

>prot_H-elongata_contig1287.2112.1 ID=prot_H-elongata_contig1287.2112.1|Name=mRNA_H-elongata_contig1287.2112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=364bp
EETDKEINVKARMPAWTKGKSVLLDLNVNHIRLALKEEEDKPIIEGALRG
AILLDGSYWTMESLADNGKMLYLTLEKAPYVTGLGPWMGVVVGEKLVDSN
YSEDDKAAEVAAMNQGMGTDMPSPSGEAYTASKSGAPPPTGEVDEKGFCR
DVLAVQGIDVAMVARQVPADGNALFSAAAISETYIQTGQHAVVPSQDVET
QAKGLRQRTMDFLEKAYEANEPLLLQGETMPAKQFVAAQARANSMGQPEE
YFKAMRADTMWGGGGEVVGLTNLLKRPIHVYELQSTGRRRVPLHIVHDYT
VLFGLRVLGRFGEPLFSTERPIYLLSTYSKFPALDPGSQTTAGNHYVALF
LPDDVTEEKRQKA*
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mRNA from alignment at H-elongata_contig1287:753..6198+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1287.2112.1 ID=mRNA_H-elongata_contig1287.2112.1|Name=mRNA_H-elongata_contig1287.2112.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5446bp|location=Sequence derived from alignment at H-elongata_contig1287:753..6198+ (Himanthalia elongata Himel1 dioecious)
GAAGAAACGGACAAAGAGATCAACGTCAAGGCGCGAATGCCAGCGTGGAC
TAAAGGCAAGTCTGTCCTGCTCGACTTGAACGTGAATCATATTCGACTGG
CCCTCAAGGAGGAAGAGGACAAGCCCATCATTGAGGTGAGGTCTGCTAAC
ATCAAGATGCGGTAACAGTAACGGTAAAACATCGAGATATTAATTACGTA
CTTGCTCCACTGTAAAACGAGCGCTCTTATGTCAGTTATGTTCTGCAGAG
ATCATTTAGGTGATACAGAAACCAATTAGGTGGTAAAGGATAAACATATC
AATTGTTATTAGGAGATGAAGAGATCGAAGAGAGATAGCGCCAGTTAGAT
CGTTAGGGACCATCCAGCATTGTGTGTTGGGTAAACTACCCCGTCGAGGC
GGTGGTGTCATGATGATGTCATAATGGATGACTCCTCTAGTACGTGTACT
CAAAATTAAGCTGAAAACGATCGCCACCCACAACCATCCTTTCGCTTGCA
GGGCGCTTTACGGGGAGCAATCCTGCTAGATGGAAGCTATTGGACCATGG
GTGAGGAGAAACCGTGTAACTCCGTCTGGCGTATGCGTCCAGCGCAAGAC
CCAGTCGATCCGCCTTTCCTTCCGGTCCAATGAGGCGTGTCCGTGTCGTC
CTCTTCTCCGTGACGCAAGACCTATTAAGAGTTCCGATTCTTTATTTTAT
ACAACAGTAGAATTAGCCCAACTGGCGTATTTATTCCCAAGTCAATGAGA
AGGAAGGCAGGCTGACACCAAGATACCGTACATTATTCAGTATCCAGTTC
TTTGGCACAAAACAGTATAAACAGTGCACAAAACAGTATAAACAATGGAA
TAAACAGTGCGTTTATTCCATTCTGACAGCTACTGCACTAAATATATGTA
TCGTTTTATAACGAACGGCTGTCTACCCGACATCGCACGCCGCTTTCCTT
TGGTAGAGTCGCTAGCCGACAATGGCAAGATGCTGTACCTCACCCTCGAG
AAGGCACCGTATGTGACAGGGCTAGGTCCGTGGATGGGCGTGGTCGTTGG
GGAGAAGCTTGTGGACTCGAACTATTCGGAAGACGATAAGGTATCCAGTA
CCAATATCAACTAAACACTATATAGTGTACATTGTACAGTATACTGTAAA
TAGTACCGGTATACCGTACATTACCTGGTATATATTACCTGGTATACAGG
AATTAAGATAATAAAGTCACGCAACGTCTATGATTGGAAGTCTGGGTATT
TTTCTCCTGCTTAGCGTTGGATGATGCTGGAACTATTTTACGATGGTGCG
AGACTCTCACGAATATTTCCGTCAGAATCCTGCGAACAACGCGTACCCAC
GATCTGGTTTAGCCAAGGTTCGTCCCGCGTTCTCGGCACCGCGAAAATGA
TTCGATTGAGGCTAACGAGTAACGATCAGAATAACGATCAGAGACTGTTT
CGGCCTTGAGGCGCTGTGGTGCTGAAGTCTGGTTCATCACTTCCTCCCGG
GTTTGACCTTTTTTAGGGAAACCCTGGTCAGAAAAATAATAATTATGTTC
ATTTTCGGCTGATGAGGCTTACTGAATATGATCATAATATTTTGTCAACT
GTCAGGAGCTCAATAAAAATACAATCGTTACGCCCCGTCGTTGGGCCATC
GAGCTACCTTACCCTGCGCAATTTGAGCAATATTTGATTTGAGAATGACG
TATCCGTGTCCGTGTCCGTGTCCACCCTATTTCTACCCAGGCGGCGGAGG
TAGCTGCGATGAACCAAGGGATGGGCACGGACATGCCTTCCCCTTCCGGC
GAAGGTAATTTATTTATGTATTTCTGTATATACAACGTACTATTACTATT
ACTATTAGTATTAGTATTAGTATTACCTACGCACTTGTATTAATATATAC
GGTAATTAACTTACAGCGCGATGGCCGCCCTCCGATCGGTCAAGCTTCCC
GCGCAACTCGACACACCATCGCCGTCGCCGTCGCCGTCGCCATCGCCGTC
GATCGTACAATGGTTGTAGGGTTGTAGGGTAGTTTATTAATAGTATTAAT
AGTACAAGGAGGCTACATTATACGAAGTACATTCTTTAAGAAATAGGGTC
CTCTTTGTCTTGCTCTGTTCTGAATACGGCCCATTTCTGAATATGCCAGC
GTAATGTCATAACGTCCTAACAGCCTACACAGCCTCCAAATCCGGCGCAC
CGCCTCCCACGGGCGAAGTAGACGAGAAAGGCTTCTGCCGAGACGTGCTG
GCTGTCCAGGGCATAGATGTTGCCATGGTGGCGCGACAGGCGAGTGAAGA
GAAGCACCACACCTGAACCTTGCTGCCGGCGTTCGTTCAGGGACTCATCG
CTTGAAGTCGATTTTTCCACTGCCAGCGTGAAGGCTTATTTGTGTGGATC
GGTCTGCTGCAGCATCGCGCCCGCCCGGGAGGAGCTATCGTATCAAAAGT
ACTGTACCCTATCTATCGCACCGTATCATCTCATGCATTAGATCTTTATT
TAGCTGTACAGTAAACAACCCACTATAAGCCAACCGTGCATCAGCTCGAT
TGACAGACCGTTCTCGTTGTTGTTGTTGTTGTTTTTGAACACGGCCCGGG
AAAAGGAGGAACCAATCCCGTGTTCCCGTGGTTTTGTCAGATTATTTGAT
ACCGGGGTGACCCTTGTCTGAAAAGGAGCGGGTAAACCGTGTACAGCAGG
GGTAGTAACAAAAATTCCCGGAAAACTCGATATCATATCAAGCAAATGTT
TGATTTACTATGTGACCTAGATAGTAATATTATGTCCTACATGCTTGCTT
TAAGTATCTTCGGTGGTGTCTTCCTCGTTGGTTGGTTTACAGGTGCCGGC
TGACGGGAACGCACTTTTCTCCGCCGCGGCCATTTCCGAAACCTACATTC
AAACGGGCCAGCACGCGGTTGTTCCCTCCCAGGATGTGGAAACCCAAGCG
AAGGGGTTGAGACAGGTGACCGCCACTTGGTTCATGCGGTCAGGCGATGA
AGCTTCATAGGCCCCCTTGAAGGCAGGTTGCTGCAGCTCCTGTAGGAGGC
TCACTGCGTCGATTACTCCGTCGATTACCACCCTAAAACCCTACTGATAC
CTACGTGCCGCAGCGGACTATGGACTTTCTGGAGAAGGCGTATGAGGCGA
ACGAGCCACTCTTATTACAGGGCGAGACGATGCCGGCCAAGCAATTCGTC
GCCGCCCAGGCCCGGGCCAACAGCATGGGTCAACCGGAAGAGTACTTCAA
GGTGGGGGCACCGCATCGGTACCCCGGCGGGCGCATTTCGTTGACTTTTG
CTTGGGTCGTTGTATATATGTAGTGCGCGCTCGTCGCATAACTGGGCCGC
CCCCAGAGTCTATAATAGAGCTTGGCTGAGAGTCTATTGATAGATGCTTG
GATGAGAGTCTATTAATAGGCTTTGTTTTTCTCGCGGTATGTTCGTCCCT
TGAGTCGCGATGCGTTAAGAGAAGCATGCAGCGCCTTGCAGTCAGTGTGG
AAAGTTATCCAGATAAATTCCCGTGATGCTGTCGCCGCATCTCGAGCCGT
ATATCGTTAACGTACAGTATCCGGTTGATCCTTATTCGGCTATATATGAT
GACGTCATGACCACAAATTGTATTTTGTGCATATTTTTTGCGCACTCCGT
ATGGCCTGGCCTGGTCTGACATGGTATTTGTCTCCGGGGCCATTATCGTA
GACCAGACTTGCCGTGGTGGGCTATTGTCGCTGCATACAGTACGTAATAC
CGGTATTTGTTACACTTGTCGCTGGTACTTTTGTGTGTACACGGTACCCC
GTACAATGGCACCACGGTAGGCCATGCGAGCTGACACCATGTGGGGGGGC
GGCGGTGAAGTGGTGGGCCTTACGAACTTGCTCAAGAGACCGATTCACGT
GTACGAGCTCCAATCAACGGGACGACGGCGAGTGCCACTACATATAGTAC
ACGATTATACTGTACTGTTCACTTTTAATATTGATAGTGCTGAAGATCGA
CCGCTGTCGACCCATATCGACGACGCAACCCTCGGACGGAATGGGCGGTT
TCCTACAGAAACAATTAGATATTAGACTGGCTTTGCATTGCCTGGTGGGA
TATTTTTGTCTTTCATAAAAAAAATGATTCGATCGCGGACTCGTCACCAC
GCCTAATGGCGACTTGCTCGATGAGGCAGAAATGCGAGAGCTGTCGTACA
TCAGTCAACCATACCGCCACCCTTGACCACTTCACGCCACCTGTTTGACG
ATTGGTCTGCAAAATGCGCGAATGAACAGGTTTGGCCTCAGGGTTCTGGG
TAGGTTTGGGGAGCCACTCTTCAGCACAGAGAGACCCATCTACCTGCTCT
CGACGTATTCCAAGTGCGTACGCGGTACGGCATGACAGCGGTACGGTATG
ACAGCGGTACGGCATGACAGCGGTATGGTATGACAGCATCGACAGTTTCA
CACTTCAAGGCCGATGGCCACAAGTTTTGGAGCTAACCGCTCGCCGTTAG
GACTGCATATATCTAGATCCGGACCCTTTACACGCTACTGTACTGTATTG
TCATGACGTCATCACATATAACAGGGAAAGGGTAAACCGGATTTGGTTGC
CACCTGCTTGTGGTAGCTGAACGGGGAAATTATTTTTAGATATGAGCGAA
CCACCTTACCTACCCCCCTATTTTTGTTAATACTACTAATAACACTACTA
CGACGAGTAATGTAAAATTATCGGTTACAACTATTTGTCAATAACAATAT
AATCATGTTTGCGTTATTCGGGACGGGAGGGATTCTAACGAATAGTAGTG
CTTGCAAAGTTATCGAACCTTATGCTGGGTACCGGTTCATTTGAATTTTA
TTTTATTAGTAGTTGTAGTATTATTACTAATTGTTGGTAATATTTCGTTA
CAACCCTTCCAACATCCACACCTTCTTAGCACCGTGAGAGGTGCAATCGA
GGGGACAACTATCGTCAGGTTCGAATGCGTACATTACTACCCTTTAGCAC
AAAATCAATTTTCTTATTGTTATTATTGTTGTGGCGATGGGTCCAATCAA
GGTGATAGGTTACCGATTACCCTATTACAATGTTGCTCATCCCGCATGTC
GTTTTGAAGAAAAGTGTATTTACCCATCTCTTTCCATACAACTTTAAACC
CATTCGTTAATCATTATCCTGGTATATTACTTGGCAAGGTGTACGCCTAG
GTTGACTGAGCGGTTTCTGCTGCTGTAGGACTTGGTACAATGGCGCAATG
ACACTTATGTACTAACAGCGTGCAAGGAACACCGGCCAACAGGGTCGACA
ACATGTTGGTGTGTGTGCCGCGTTTGCATCCGGTTCCCTACAGGTTCCCC
GCCCTGGACCCCGGGAGCCAAACAACCGCTGGTAACCACTACGTCGCGTT
GTTTCTTCCCGATGACGTCACGGAGGAGAAGCGCCAGAAGGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig1287:753..6198+

>mRNA_H-elongata_contig1287.2112.1 ID=mRNA_H-elongata_contig1287.2112.1|Name=mRNA_H-elongata_contig1287.2112.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2184bp|location=Sequence derived from alignment at H-elongata_contig1287:753..6198+ (Himanthalia elongata Himel1 dioecious)
GAAGAAACGGACAAAGAGATCAACGTCAAGGCGCGAATGCCAGCGTGGAC
TAAAGGCAAGTCTGTCCTGCTCGACTTGAACGTGAATCATATTCGACTGG
CCCTCAAGGAGGAAGAGGACAAGCCCATCATTGAGGAAGAAACGGACAAA
GAGATCAACGTCAAGGCGCGAATGCCAGCGTGGACTAAAGGCAAGTCTGT
CCTGCTCGACTTGAACGTGAATCATATTCGACTGGCCCTCAAGGAGGAAG
AGGACAAGCCCATCATTGAGGGCGCTTTACGGGGAGCAATCCTGCTAGAT
GGAAGCTATTGGACCATGGGGCGCTTTACGGGGAGCAATCCTGCTAGATG
GAAGCTATTGGACCATGGAGTCGCTAGCCGACAATGGCAAGATGCTGTAC
CTCACCCTCGAGAAGGCACCGTATGTGACAGGGCTAGGTCCGTGGATGGG
CGTGGTCGTTGGGGAGAAGCTTGTGGACTCGAACTATTCGGAAGACGATA
AGAGTCGCTAGCCGACAATGGCAAGATGCTGTACCTCACCCTCGAGAAGG
CACCGTATGTGACAGGGCTAGGTCCGTGGATGGGCGTGGTCGTTGGGGAG
AAGCTTGTGGACTCGAACTATTCGGAAGACGATAAGGCGGCGGAGGTAGC
TGCGATGAACCAAGGGATGGGCACGGACATGCCTTCCCCTTCCGGCGAAG
GCGGCGGAGGTAGCTGCGATGAACCAAGGGATGGGCACGGACATGCCTTC
CCCTTCCGGCGAAGCCTACACAGCCTCCAAATCCGGCGCACCGCCTCCCA
CGGGCGAAGTAGACGAGAAAGGCTTCTGCCGAGACGTGCTGGCTGTCCAG
GGCATAGATGTTGCCATGGTGGCGCGACAGCCTACACAGCCTCCAAATCC
GGCGCACCGCCTCCCACGGGCGAAGTAGACGAGAAAGGCTTCTGCCGAGA
CGTGCTGGCTGTCCAGGGCATAGATGTTGCCATGGTGGCGCGACAGGTGC
CGGCTGACGGGAACGCACTTTTCTCCGCCGCGGCCATTTCCGAAACCTAC
ATTCAAACGGGCCAGCACGCGGTTGTTCCCTCCCAGGATGTGGAAACCCA
AGCGAAGGGGTTGAGACAGGTGCCGGCTGACGGGAACGCACTTTTCTCCG
CCGCGGCCATTTCCGAAACCTACATTCAAACGGGCCAGCACGCGGTTGTT
CCCTCCCAGGATGTGGAAACCCAAGCGAAGGGGTTGAGACAGCGGACTAT
GGACTTTCTGGAGAAGGCGTATGAGGCGAACGAGCCACTCTTATTACAGG
GCGAGACGATGCCGGCCAAGCAATTCGTCGCCGCCCAGGCCCGGGCCAAC
AGCATGGGTCAACCGGAAGAGTACTTCAAGCGGACTATGGACTTTCTGGA
GAAGGCGTATGAGGCGAACGAGCCACTCTTATTACAGGGCGAGACGATGC
CGGCCAAGCAATTCGTCGCCGCCCAGGCCCGGGCCAACAGCATGGGTCAA
CCGGAAGAGTACTTCAAGGCCATGCGAGCTGACACCATGTGGGGGGGCGG
CGGTGAAGTGGTGGGCCTTACGAACTTGCTCAAGAGACCGATTCACGTGT
ACGAGCTCCAATCAACGGGACGACGGCGAGTGCCACTACATATAGTACAC
GATTATACTGTACTGCCATGCGAGCTGACACCATGTGGGGGGGCGGCGGT
GAAGTGGTGGGCCTTACGAACTTGCTCAAGAGACCGATTCACGTGTACGA
GCTCCAATCAACGGGACGACGGCGAGTGCCACTACATATAGTACACGATT
ATACTGTACTGTTTGGCCTCAGGGTTCTGGGTAGGTTTGGGGAGCCACTC
TTCAGCACAGAGAGACCCATCTACCTGCTCTCGACGTATTCCAAGTTTGG
CCTCAGGGTTCTGGGTAGGTTTGGGGAGCCACTCTTCAGCACAGAGAGAC
CCATCTACCTGCTCTCGACGTATTCCAAGTTCCCCGCCCTGGACCCCGGG
AGCCAAACAACCGCTGGTAACCACTACGTCGCGTTGTTTCTTCCCGATGA
CGTCACGGAGGAGAAGCGCCAGAAGGCATAAGTTCCCCGCCCTGGACCCC
GGGAGCCAAACAACCGCTGGTAACCACTACGTCGCGTTGTTTCTTCCCGA
TGACGTCACGGAGGAGAAGCGCCAGAAGGCATAA
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