mRNA_H-elongata_contig1287.2113.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1287.2113.1
Unique NamemRNA_H-elongata_contig1287.2113.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1287.2113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1287contigH-elongata_contig1287:12712..13783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size708
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1287.2113.1prot_H-elongata_contig1287.2113.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1287 12763..13200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929765.2336378-UTR-H-elongata_contig1287:12711..127621622929765.2336378-UTR-H-elongata_contig1287:12711..12762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1287 12712..12762 -
1691679148.9785068-UTR-H-elongata_contig1287:12711..127621691679148.9785068-UTR-H-elongata_contig1287:12711..12762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1287 12712..12762 -
1622929765.2749274-UTR-H-elongata_contig1287:13200..132781622929765.2749274-UTR-H-elongata_contig1287:13200..13278Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1287 13201..13278 -
1691679148.9988966-UTR-H-elongata_contig1287:13200..132781691679148.9988966-UTR-H-elongata_contig1287:13200..13278Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1287 13201..13278 -
1622929765.2878115-UTR-H-elongata_contig1287:13642..137831622929765.2878115-UTR-H-elongata_contig1287:13642..13783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1287 13643..13783 -
1691679149.0063322-UTR-H-elongata_contig1287:13642..137831691679149.0063322-UTR-H-elongata_contig1287:13642..13783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1287 13643..13783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929765.2588394-CDS-H-elongata_contig1287:12762..132001622929765.2588394-CDS-H-elongata_contig1287:12762..13200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 12763..13200 -
1691679148.9881396-CDS-H-elongata_contig1287:12762..132001691679148.9881396-CDS-H-elongata_contig1287:12762..13200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1287 12763..13200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1287.2113.1

>prot_H-elongata_contig1287.2113.1 ID=prot_H-elongata_contig1287.2113.1|Name=mRNA_H-elongata_contig1287.2113.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MSLRGFSASVDGVKEQTAQDYEDHKDLREVHQGAGDQDTLEESHHQQRLV
APQVQPVEGDGSDSQVESRTPPTMERNLFLSALANGKLAVSVILSSNSNS
SLPLILIIDRPFRVGNMKGKLCGDEYRNVYRVRSYFAGLYRRRAI*
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mRNA from alignment at H-elongata_contig1287:12712..13783-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1287.2113.1 ID=mRNA_H-elongata_contig1287.2113.1|Name=mRNA_H-elongata_contig1287.2113.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1072bp|location=Sequence derived from alignment at H-elongata_contig1287:12712..13783- (Himanthalia elongata Himel1 dioecious)
TCGCTTTTCTTCAACGACACTGTCATTGAACTTCACCGGATTGCAGCTAC
GAGGTGGAGTGATCGATTTTCGTGGTAGTTGCCTCCAGAGAAAGTGGTCA
CGGTGAAGTGGATATTCAAATTGTGCAAGACGCTTGGAAAGGTACGAATA
CGATATCTCGTGATCGATTGGTTGAACCAGAAATAAGCGTGGCGCACTGC
GTCAAGTAGTCGACTACTCTTCCATCCTTTAGAGCCTAATGCCTTTGTAG
TATAATGTTAGCAAGATCAGAGAGAGAGAGAGAGAGAGAAGTAAGGTGTC
ATTCCGCTGACAATGAAACGATCCAATCACGGAGAGGAATCGATCTCAAG
GACTCCGTTTCAACGAATCAGTAAATTCTGTAAAGGAAAAAAGTTGATCG
CACGTTGTATGTATTGCATATCGCCGAAGAAACCTCCGCATCGCCCAGCA
GTAACAGCCGCCCGCGCCCGCCTCGACCTTGGCGCTGCCAACCATCGTTT
GACAGGGATCAGCAAGCCACCAAGGATTAACCCGTAGTTATATTATAATA
TTATAGTCGAACGTTGCACCACACGGCACCACGATGAGCTTAAGGGGTTT
TTCTGCAAGCGTCGACGGAGTGAAGGAGCAGACGGCGCAGGATTATGAGG
ATCATAAGGATCTGAGGGAGGTTCATCAAGGAGCGGGAGATCAAGACACT
CTTGAAGAATCTCACCATCAACAGCGTCTGGTCGCCCCCCAGGTCCAACC
GGTAGAGGGAGATGGGAGTGACAGTCAAGTGGAATCGCGCACGCCGCCCA
CGATGGAGCGCAACTTGTTTCTGAGCGCGCTCGCTAACGGCAAGCTCGCG
GTGAGCGTGATTTTATCCTCTAACTCGAACAGCTCGTTGCCCCTTATCCT
TATTATTGACAGACCGTTCCGAGTCGGTAACATGAAAGGTAAGCTCTGCG
GTGACGAGTATCGGAATGTATATCGTGTACGAAGCTACTTCGCTGGGCTA
TACCGACGTCGTGCCATTTAAATAGCTTACTGGGGTCCGTATGTGGTTAA
TCCGCCATCTGCCGTCGCCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig1287:12712..13783-

>mRNA_H-elongata_contig1287.2113.1 ID=mRNA_H-elongata_contig1287.2113.1|Name=mRNA_H-elongata_contig1287.2113.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig1287:12712..13783- (Himanthalia elongata Himel1 dioecious)
ATGAGCTTAAGGGGTTTTTCTGCAAGCGTCGACGGAGTGAAGGAGCAGAC
GGCGCAGGATTATGAGGATCATAAGGATCTGAGGGAGGTTCATCAAGGAG
CGGGAGATCAAGACACTCTTGAAGAATCTCACCATCAACAGCGTCTGGTC
GCCCCCCAGGTCCAACCGGTAGAGGGAGATGGGAGTGACAGTCAAGTGGA
ATCGCGCACGCCGCCCACGATGGAGCGCAACTTGTTTCTGAGCGCGCTCG
CTAACGGCAAGCTCGCGGTGAGCGTGATTTTATCCTCTAACTCGAACAGC
TCGTTGCCCCTTATCCTTATTATTGACAGACCGTTCCGAGTCGGTAACAT
GAAAGGTAAGCTCTGCGGTGACGAGTATCGGAATGTATATCGTGTACGAA
GCTACTTCGCTGGGCTATACCGACGTCGTGCCATTTAAATGAGCTTAAGG
GGTTTTTCTGCAAGCGTCGACGGAGTGAAGGAGCAGACGGCGCAGGATTA
TGAGGATCATAAGGATCTGAGGGAGGTTCATCAAGGAGCGGGAGATCAAG
ACACTCTTGAAGAATCTCACCATCAACAGCGTCTGGTCGCCCCCCAGGTC
CAACCGGTAGAGGGAGATGGGAGTGACAGTCAAGTGGAATCGCGCACGCC
GCCCACGATGGAGCGCAACTTGTTTCTGAGCGCGCTCGCTAACGGCAAGC
TCGCGGTGAGCGTGATTTTATCCTCTAACTCGAACAGCTCGTTGCCCCTT
ATCCTTATTATTGACAGACCGTTCCGAGTCGGTAACATGAAAGGTAAGCT
CTGCGGTGACGAGTATCGGAATGTATATCGTGTACGAAGCTACTTCGCTG
GGCTATACCGACGTCGTGCCATTTAA
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