mRNA_H-elongata_contig10240.211.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10240.211.1
Unique NamemRNA_H-elongata_contig10240.211.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: D7G6Z3_ECTSI (DNA ligase IV n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z3_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 6.810e-87
Identity = 146/240 (60.83%), Postives = 181/240 (75.42%), Query Frame = 1
Query:    1 LDNLRDKYGVKTMKLAKLIAQMYFPD-RSSKQYQQLVLHTDPVKNPSPA-KEWQITGDFPLTLQYILQTSA-SLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNSVRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSER 711
            LDNLRDKYG++T K+A L A +YFP+ +  + Y +L  +TDP +N SP  K WQ+TGD  LTL+Y+L  S   +  V+ TTWT+  VN  L DLA A +D  R +VL RIR +CS +NQKWI R+ILKNLKI +KK+ VLKK HP AL+ Y+RTTSLR+VCS FIG H+SV    +LEVFT+FSPMLA N FY + KIVP + GRPFCMDVKLDGERMLCH EG K+KWFTRNAKDY+++
Sbjct:   79 LDNLRDKYGMRTAKMASLFADLYFPNNKKGEGYLRLQSYTDPDRNSSPGDKRWQVTGDLALTLEYVLTESRFGIKAVDATTWTIRDVNDALSDLANAPNDQRRKQVLTRIRTNCSPMNQKWIARMILKNLKINIKKE-VLKKFHPGALDYYNRTTSLRRVCSAFIGKHSSVTATFNLEVFTTFSPMLAMNFFYGLGKIVPSLQGRPFCMDVKLDGERMLCHREGNKVKWFTRNAKDYTDK 317          
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: W7TM40_9STRA (Dna ligase 4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM40_9STRA)

HSP 1 Score: 139 bits (350), Expect = 9.920e-36
Identity = 84/242 (34.71%), Postives = 140/242 (57.85%), Query Frame = 1
Query:    1 LDNLRDKYGVKTMKLAKLIAQMYFPD-RSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTLQY--ILQTSASLHVVEKTTW-TLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNSV-RLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSER 711
            +D  R  Y +K   LAKL  ++   D R S+  Q+L+ +    + P P++E   T   P T  +  +L+   +  V ++ +  TL ++++ LD L RA     R  VL RI +  SA  QKW++RIIL+++KI L+++ +L   H  A+  ++ T  LR VCS        + R    +++   F+PMLA  L + + K+ P M G PF +++K+DGERMLCH +GG+++WF+R+A DY+++
Sbjct:   93 IDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRY----RQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRATLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDK 330          
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: A0A4D9CSH9_9STRA (DNA_LIGASE_A3 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH9_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.300e-34
Identity = 87/242 (35.95%), Postives = 135/242 (55.79%), Query Frame = 1
Query:    1 LDNLRDKYGVKTMKLAKLIAQMYFPD-RSSKQYQQLVLHTDPVKN---PSPAKEWQITGDFPLTLQYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNSV-RLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSER 711
            +D  R  Y +K   LAKL  ++   D R S+  Q+L+ +  P       SP K    T D+P  L+ +L T  +      T   L ++N+ LD L RA     R  VL RI +  SA  QKW+ RIIL+++KI L+++ +L   H  A+  ++ T  LR VCS        + R    +++   F+PMLA  L + + K+ P M G PF +++K+DGERMLCH +GG+++WF+R+A DY+++
Sbjct:   93 IDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPPPPRALDSPPKR-PCTFDWPDVLEDVLATRVTQQASRAT---LGELNEVLDQLTRATEHQSRQTVLNRILLWLSAKEQKWLARIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDK 330          
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: H3HDA1_PHYRM (DNA ligase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDA1_PHYRM)

HSP 1 Score: 128 bits (321), Expect = 3.380e-30
Identity = 86/230 (37.39%), Postives = 131/230 (56.96%), Query Frame = 1
Query:   22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNSVRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708
            Y +K  K+AK+  Q+     +SK  Q+L    DP    S +      GDF   L + +L  SA     ++   TL+ VN  LD L R+ S+T R +V   +  + SA  QKWI+R++LK+LKI L+ + VLK IHPDA+E Y+ T  L KVC+     +++VR    L+ F  F+PMLA  +  N  + +  + G  F M+ KLDGER+ CH+ G ++++ +RN  +Y+E
Sbjct:   69 YMLKEKKIAKIYVQVLGLSSASKDAQKLEHFNDPKIVDSKS-----VGDFAAVLYEVVLYRSAVSKSRQQ--HTLKDVNDLLDALVRSDSNTGRKKVFMTLATEYSADEQKWIIRVVLKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCTDL--KNSAVRYVPQLQPFQVFTPMLAKRV--NFGECISAINGDTFVMEPKLDGERITCHVRGEEVQFISRNGINYTE 287          
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: A0A662X6F6_9STRA (DNA ligase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6F6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.670e-30
Identity = 84/230 (36.52%), Postives = 128/230 (55.65%), Query Frame = 1
Query:   22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTLQYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708
            Y +K  K+AK+   +     +SK  Q+L    DP        E +  GDF   L  +L+   SL    K   TL+ VN+ LD L RA S+  R +++ R+  +  A  QKW++R++LK+LK+ L+ + VL  +HPDA+E Y+ T  L KVC+    L NS VR    LE F  FSPMLA  + +   +    +    F M+ KLDGER+ CH++G ++++ +RN  +Y+E
Sbjct:   85 YNLKEKKIAKIYVDVLGMSSASKDAQKLEHFNDP-----KVVESKSVGDFAAVLYEVLR-YRSLAGNTKREHTLQDVNELLDALVRADSNASRKKMVMRLATEFPANEQKWVVRVVLKDLKVGLRHERVLNFLHPDAMEMYNHTNDLHKVCTD---LRNSAVRYVPQLEPFQVFSPMLAKRVGFG--ECTTAINADAFVMEPKLDGERITCHVQGKQVQFISRNGINYTE 303          
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: A0A2P4YC19_9STRA (DNA ligase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YC19_9STRA)

HSP 1 Score: 127 bits (318), Expect = 9.010e-30
Identity = 87/231 (37.66%), Postives = 127/231 (54.98%), Query Frame = 1
Query:   22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708
            Y +K  K+AK+   +      SK  Q+L    DP        E +  GDF   L   +L  SA      K   TL+ VN+ LD L +A S+  R +V  ++  + SA  QKWI+R++LK+LKI L+ + VL+ IHPDA+E Y+ T  L KVC     L NS VR    LE F  F+PMLA  +  N  + +  +    F M+ KLDGER+ CH++G ++++ +RN  +Y+E
Sbjct:   95 YMLKEKKIAKIYIDVLGLAPISKDAQKLEHFNDP-----KIVESKSVGDFAAVLFDVVLYQSA--RTTSKQQHTLQDVNELLDQLVQADSNAARKKVFMKLATEYSADEQKWIIRVVLKDLKIGLRHERVLQFIHPDAMEMYNHTNDLHKVCRE---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINADAFVMEPKLDGERITCHVQGNEVQFISRNGINYTE 313          
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: G4YG23_PHYSP (DNA ligase n=3 Tax=Phytophthora TaxID=4783 RepID=G4YG23_PHYSP)

HSP 1 Score: 127 bits (318), Expect = 9.010e-30
Identity = 86/230 (37.39%), Postives = 128/230 (55.65%), Query Frame = 1
Query:   22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTLQYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708
            Y +K  K+AK+  Q+     +SK  Q+L    DP    S +      GDF   L Y +    S     +   TL+ VN  LD L +A ++  R +V+ ++  + SA  QKWI+R++LK+LKI L+ + VLK IHPDA+E Y+ T  L KVC     L NS VR    LE F  F+PMLA  +  N  + +  +    F M+ KLDGER+ CH++G ++++ +RN  +Y+E
Sbjct:   65 YMLKEKKIAKIYVQVLGLSPASKDAQKLEHFHDPKIVDSKS-----VGDFAAVL-YEVMLYRSTASKSRQQHTLKDVNALLDSLVQADNNATRKKVIMKLATEYSADEQKWIIRVVLKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTE 283          
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: D0MXT4_PHYIT (DNA ligase n=12 Tax=Phytophthora TaxID=4783 RepID=D0MXT4_PHYIT)

HSP 1 Score: 127 bits (318), Expect = 9.010e-30
Identity = 90/231 (38.96%), Postives = 127/231 (54.98%), Query Frame = 1
Query:   22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708
            Y +K  K+AK+   +      SK  Q+L    DP    S +      GDF   L   +L  SA      KT  TLE VN  LD L +A ++  R +V  ++  + SA  QKWI+R+ILK+LKI L+ + VLK IHPDA+E Y+ T  L KVC     L NS VR    LE F  F+PMLA  +  N  + +  +    F M+ KLDGER+ CH++G ++++ +RN  +Y+E
Sbjct:   73 YMLKEKKIAKIYIDVLGLAPISKDAQKLEHFNDPKIVDSKS-----VGDFAAVLFDVVLYQSA--RTKSKTHHTLEDVNTLLDRLVQADNNAARKKVFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCKE---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTE 291          
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: M4B6V2_HYAAE (DNA ligase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6V2_HYAAE)

HSP 1 Score: 125 bits (314), Expect = 3.080e-29
Identity = 87/231 (37.66%), Postives = 130/231 (56.28%), Query Frame = 1
Query:   22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708
            Y +K  K+AKL  Q+      SK  Q+L    DP    S +      GDF   L + +L  S +  +  K   T++ VN+ LD L +A S+  R  V  ++  + +A  QKWI+RI+LK+LKI L+ + VLK IHPDA+E Y+ T  L KVC+    L NS VR    LE F  F+PMLA  +  N  + +  +    F ++ KLDGER+ CH++G ++++ +RN  +Y+E
Sbjct:   69 YLLKEKKIAKLYIQVLGLAPISKDAQKLEHFNDPKIADSKS-----VGDFAAVLYEVVLYRSGASKLKPK--HTIQDVNELLDTLVQADSNAARKNVFMKLATEYAAEEQKWIIRIVLKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCTD---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINADAFVVEPKLDGERITCHVQGEEVQFISRNGINYTE 287          
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: A0A3M6VJB0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJB0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.420e-29
Identity = 86/235 (36.60%), Postives = 134/235 (57.02%), Query Frame = 1
Query:   13 RDK-YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708
            RD+ Y +K  K+AK+  Q+      SK  Q+L    DP    S +      GDF   L + +L  S +     K   T++ VN+ L+ L +A S+T R +V  ++  + +A  QKWI+R++LK+LKI L+ + VL+ IHPDA+E Y+ T  L KVC+    L NS VR    LE F  F+PMLA  +  N  + +  +    F ++ KLDGER+ CH++G ++++ +RN  +Y+E
Sbjct:   67 RDRTYMLKEKKIAKIYIQVLGLAPISKDAQKLEHFNDPKIVDSKS-----VGDFAAVLYEVVLYRSGTSK--SKLKHTIQDVNELLNYLVQADSNTARKKVFMKLATEYTAEEQKWIIRVVLKDLKIGLRHERVLQFIHPDAMEMYNHTNDLHKVCTD---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINDDVFVVEPKLDGERITCHVKGKEVQYISRNGTNYTE 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Z3_ECTSI6.810e-8760.83DNA ligase IV n=1 Tax=Ectocarpus siliculosus TaxID... [more]
W7TM40_9STRA9.920e-3634.71Dna ligase 4 n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A4D9CSH9_9STRA7.300e-3435.95DNA_LIGASE_A3 domain-containing protein n=1 Tax=Na... [more]
H3HDA1_PHYRM3.380e-3037.39DNA ligase n=1 Tax=Phytophthora ramorum TaxID=1643... [more]
A0A662X6F6_9STRA6.670e-3036.52DNA ligase n=2 Tax=Nothophytophthora sp. Chile5 Ta... [more]
A0A2P4YC19_9STRA9.010e-3037.66DNA ligase n=2 Tax=Phytophthora palmivora var. pal... [more]
G4YG23_PHYSP9.010e-3037.39DNA ligase n=3 Tax=Phytophthora TaxID=4783 RepID=G... [more]
D0MXT4_PHYIT9.010e-3038.96DNA ligase n=12 Tax=Phytophthora TaxID=4783 RepID=... [more]
M4B6V2_HYAAE3.080e-2937.66DNA ligase n=1 Tax=Hyaloperonospora arabidopsidis ... [more]
A0A3M6VJB0_9STRA3.420e-2936.60Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10240contigH-elongata_contig10240:3664..7599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.8
Seed ortholog evalue5.7e-76
Seed eggNOG ortholog2880.D7G6Z3
KEGG rclassRC00005
KEGG koko:K10777
KEGG ReactionR00381
KEGG Pathwayko03450,map03450
GOsGO:0000012,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0005958,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006289,GO:0006297,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009506,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016874,GO:0016886,GO:0030054,GO:0032807,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048046,GO:0050896,GO:0051103,GO:0051716,GO:0055044,GO:0070419,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.DNA ligase
EggNOG OGsCOG1793@1,KOG0966@2759
EC6.5.1.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons7
Model size713
Cds size711
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.083646-CDS-H-elongata_contig10240:3663..38041622929562.083646-CDS-H-elongata_contig10240:3663..3804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 3664..3804 +
1691679071.2228193-CDS-H-elongata_contig10240:3663..38041691679071.2228193-CDS-H-elongata_contig10240:3663..3804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 3664..3804 +
1622929562.09863-CDS-H-elongata_contig10240:4272..43801622929562.09863-CDS-H-elongata_contig10240:4272..4380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 4273..4380 +
1691679071.2354288-CDS-H-elongata_contig10240:4272..43801691679071.2354288-CDS-H-elongata_contig10240:4272..4380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 4273..4380 +
1622929562.110713-CDS-H-elongata_contig10240:4730..48441622929562.110713-CDS-H-elongata_contig10240:4730..4844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 4731..4844 +
1691679071.244882-CDS-H-elongata_contig10240:4730..48441691679071.244882-CDS-H-elongata_contig10240:4730..4844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 4731..4844 +
1622929562.124248-CDS-H-elongata_contig10240:5247..53421622929562.124248-CDS-H-elongata_contig10240:5247..5342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 5248..5342 +
1691679071.2537656-CDS-H-elongata_contig10240:5247..53421691679071.2537656-CDS-H-elongata_contig10240:5247..5342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 5248..5342 +
1622929562.1428597-CDS-H-elongata_contig10240:6641..67081622929562.1428597-CDS-H-elongata_contig10240:6641..6708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 6642..6708 +
1691679071.2674038-CDS-H-elongata_contig10240:6641..67081691679071.2674038-CDS-H-elongata_contig10240:6641..6708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 6642..6708 +
1622929562.1840043-CDS-H-elongata_contig10240:7034..71781622929562.1840043-CDS-H-elongata_contig10240:7034..7178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 7035..7178 +
1691679071.278707-CDS-H-elongata_contig10240:7034..71781691679071.278707-CDS-H-elongata_contig10240:7034..7178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 7035..7178 +
1622929562.212004-CDS-H-elongata_contig10240:7557..75991622929562.212004-CDS-H-elongata_contig10240:7557..7599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 7558..7599 +
1691679071.2904-CDS-H-elongata_contig10240:7557..75991691679071.2904-CDS-H-elongata_contig10240:7557..7599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10240 7558..7599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10240.211.1prot_H-elongata_contig10240.211.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10240 3664..7599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10240.211.1

>prot_H-elongata_contig10240.211.1 ID=prot_H-elongata_contig10240.211.1|Name=mRNA_H-elongata_contig10240.211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp
LDNLRDKYGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKE
WQITGDFPLTLQYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVR
AEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSR
TTSLRKVCSTFIGLHNSVRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMM
GRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSER
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mRNA from alignment at H-elongata_contig10240:3664..7599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10240.211.1 ID=mRNA_H-elongata_contig10240.211.1|Name=mRNA_H-elongata_contig10240.211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3936bp|location=Sequence derived from alignment at H-elongata_contig10240:3664..7599+ (Himanthalia elongata Himel1 dioecious)
TTGGACAACCTCAGGGACAAGTACGGGGTGAAGACGATGAAGCTGGCCAA GCTGATCGCGCAAATGTATTTTCCTGATAGGTCCTCGAAACAGTACCAAC AGCTCGTGCTGCACACAGATCCCGTCAAGAACCCTTCTCCGGTGAGATCT CAAGACCGCGATGATAGTTAAAATAACGAATTCGACGGGAAGGAAGAAAT CCGGCTTCTTGGAAACCCTTGTGACGATTTTTGGTGCATAAACGGGAGAG GTAAATAAGGCCGACGCGATCCCATCTGTAGGCTAGATTCTCGTTTGGAG GCTGAAGTGCATGCATATTTTTTTCTATCACACAAAACCACCAATCCTGG CGCGGTTTTCCCCGAGAGAAGACCGGGAAGCGTGCGCGCGCGTCGGGCAA CGGTAAACGAAGTTCTGCGTTCCAAGTTCTGCGTGGGGAAATACCCCGCG GTGTGCGGCACAAGTATAACTTACCGAAGTACATATTTTGTTATATCTGC CTCCAAGGCCGTCCGAGCGACGTGACATCATTTTCCTATCTCGACAACGT CCCGTATCCCGACGTATGTGGCGTTGTCCTGATGCGTTGCTGGGATCGGT CCGATTCAGGCAAAAGAGTGGCAAATCACCGGAGATTTCCCGCTCACGCT GCAGTACATCCTGCAGACCTCGGCTAGCCTGCACGTGGTCGAAAAGACGA CGTGGACGCTCGAACAGGTCGGGGCACGCACTGAATGTAGAAGATTTGGA GAGGAGCGGGACTAGATCCGGTAGGAAGAGTTGACGAGGCAATCCGCGTG CAGAAGGGTCGTTGGTCTTGCGACGAGAGGCGGTGACGTCTCCGTGGAGA TGGCGCAGGGATGGCGAAAAAACTTGAACTCACGAAGGATCCCCAGGCTA CCGCCTGCATATCTTGGATGTCTTTCGGGATACCAAGAATTTTAGCTCGC GATACCTCGACCGCAAGCAAATGCGATTAGTTATGGCCCGCTCCTCTCCC TCTCTCTGAATGCCTCTTTTCCCTCTCTCCTTTCCCCTCCTAATTAAAAA TCACCGTTCGCCGACAGGTCAACAAAACGTTGGACGACCTGGCAAGAGCC GGAAGCGATACAGTGCGCGCGGAGGTGCTGCGGAGAATCCGAGTGGATTG CAGCGCAATAAACCAGAAGTGGATCATGCGGGTGAGAAGAATTGCTCTGC TCGTCTCTTGTATCTGGCGTTCACTGCACGTCGTATTCTGAGCGAAGTTT GGTGGGAGCCTGCAAATGGCTAGTACCTTTTTCGCGATTCGTTCCTCGTC GTTGTATTCGATAAGACTGTCGCGTGAGGGACATTTCAAAATACTCATTT AACGTCTCAAGAAGCACTGGTCGCTTTACTCGATCGTTCCCTTTCTAGTA TTCTCTACTCTAGCTGGTTGTGCGTGATTTCGTGCACCCCCCCTTGTTCC ACGCCGCCCCCAGATGGAACCCCTTCGGCCTGATTAAATTATATATATAT ATATATATAAATATATAATATACTTTAGTAGGAAACATATGTAAATTTTA CGGTTAGGATGCATGGACGCCCCTGCCCGTGCAGATAATCCTGAAAAACT TGAAGATTAAGCTAAAAAAGGACAGCGTGCTGAAGAAAATTCACCCAGAC GCCTTGGAGGAGTACAGCCGAACCACGAGGCACGTACCGGTAGCAACATG CAAACGCGAGAAATGTTTGCGTGTCCGCCATCTTTCATTTCACGCGAACC TTGCCACACCCGCTCTGTTTTATTCTCCGCCCCAACGAAGCGGCATGAGC AGCGGATGGATATTTCTCCTTTGCTGCAATCTATTCTGACTGACGTCCGT TCGACGGAAACGTTTTGAGAGAAATAGGGCGCGGCAGCCCGGCACCCGTT CCATCGTCTGCAGCCCTTCCACTCCAGGTCTCCATCCCGCCTCGTCACGA CTATGGTAAAGTATATGTTTTCCGCTACCACGTATCGTCGAAGTTGTGAA CACGTACTCATTTCGCTGTCATCCGTAGAACCGGCTAGCACTGGCACAGT GCATCGCTTGGCAAGAATTGCGCGATGCGAGGGACTATAAAGACTTGGAT TTCGATCCCCTTTCCGGCGAAAGCCCTCCCGACCACCATGGGGCCGAGCA TGCACGAAAGAGGGTTGGGTAGCTGTGCTCCAGCAAAAGTATAGCTGGAA TCGAAGCGCCAAGGATTGGAGGCGTCAGCGAATGAGATAGTGGTTTTAAA AGGCAGCCCTACATGCGATGACCATAATAGTTACCGACGGGGTTTGTCGA CCAAGATCTGTTTACTGTAAAAATATGTGATGCGAGATTCCTCGCCAACG CTTTTGTCGTCGAAGCTTTTTGCACACGGCCTCAAAATTTGCCTCGCAGT CACCATCGCGACACAAAAAGTCACTTCGTCGATTTTCGTACCCAGGGCAA ACCACGCGCTGTAGCTCAAGTGAAAATATGTCGTGTTTGACCAAGGGACC GCATATTTCTCTCTTGAATTTCTTACTAAGGATGATAATTACCTCGTTAA AAAGCGCTCCTCAGCTCTTCGGAGCACACGAGAATGCGCGGTACACCTTC TGTCGAAAGAAATAATTCCCTCTTGCAGTGATGCCTTCCTTTTGTCATCG AAATGTTTAAGGCACTCTAAGCTTAGGATACCCAAGGAACGAATATTCGA GAGAGGTCGTCGCAACGGGAGCAAAATCACCGGTTTCTCGTTGACTTCCA CGACTCTGTTGTTTCAAAGCCTCTCCCTTCAGATCAGCCCCATCGGACAA CCCCTTCTTCAAGTATCATTTTTCTCTCTTTTGGAATAATACGAAGCGAA CAACTTTTATTTGTCGTCCAGTTTTGGGGACGACTTTTTTACCCTGACAA AGCCTGTACCTCTCCTTTCCCCGCCCTCAACCCCCTTCCCAATATATCGC ATACGATGCACCCTGCCGCCTCGTGCAGCCTCCGAAAGGTTTGCAGCACG TTTATCGGCCTTCACAACTCCGTACGATTGAAGTCCAGTCTTGAGGTGAT GATTCCGCCTCGGCTTCAAAGACTCTCGAGATCTTAAGCGGTTATCGAAC GTGCCGGAAAGCTACTGTCTGTAGGTAGAGAGAGACATATGGGTGGTTGA TGACCGCCCGGAGATCGACTAATGTGGATGGCTTGGCCGTGTTTAGCGCC ATGCCTTTAGACTCGGGATAGCGTTGTGCGCGATACGTGGTGCGTGGCAA CTCTTTAACGCACAAAGTTTTGGTCGAAACAACCAGCACCGTAAGAGAAA TAAAATAAAATAAATCTGTAGCATCGATACCGTGATATGACCTATTGCGC ACCCTCGCGCGTGCCGAACAGGTGTTCACGAGCTTCTCTCCGATGCTTGC CGCGAACCTGTTCTACAATATGGACAAAATCGTGCCGCGGATGATGGGGC GACCTTTCTGCATGGACGTGAAGCTGGACGGGGAGAGAATGCTGTGTCAT CTCGAGGGGGGCAAGGTGATTGAGCCGCACACGAGCAGACAGCCGCGGCT GTTGTACGCGTAAAGTTACCTCCACACGGTAACTCCGACCATATTTCGCA ATTCCAGGTTATTAAGGTTGTGCCCAAAACGTCGCTGGGTAATGAGTCCC CTTTTGGCGTAACGTGAAGGGTGATATATATCAGCCCACGGACCAAAGCC ACAGCCAGTTTTTGGTTGGCAGCCACGCACGACCGTTACGGATTTACAAA TATGCACCGTCTTTTCTGGGTGGTGCTCTGCTTTTGTCTTTGCTAGACCG CTACGCTAAAGCAGGCCCTCCCTCTCGTATCGGCCAAATGCGGTGTAAAT GACATCCACTCAAATGTTTGTGTATGTTGTATGTATGTGTGTAGATCAAG TGGTTCACGCGAAACGCGAAGGATTACTCGGAGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig10240:3664..7599+

>mRNA_H-elongata_contig10240.211.1 ID=mRNA_H-elongata_contig10240.211.1|Name=mRNA_H-elongata_contig10240.211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig10240:3664..7599+ (Himanthalia elongata Himel1 dioecious)
TTGGACAACCTCAGGGACAAGTACGGGGTGAAGACGATGAAGCTGGCCAA
GCTGATCGCGCAAATGTATTTTCCTGATAGGTCCTCGAAACAGTACCAAC
AGCTCGTGCTGCACACAGATCCCGTCAAGAACCCTTCTCCGTTGGACAAC
CTCAGGGACAAGTACGGGGTGAAGACGATGAAGCTGGCCAAGCTGATCGC
GCAAATGTATTTTCCTGATAGGTCCTCGAAACAGTACCAACAGCTCGTGC
TGCACACAGATCCCGTCAAGAACCCTTCTCCGGCAAAAGAGTGGCAAATC
ACCGGAGATTTCCCGCTCACGCTGCAGTACATCCTGCAGACCTCGGCTAG
CCTGCACGTGGTCGAAAAGACGACGTGGACGCTCGAACAGGCAAAAGAGT
GGCAAATCACCGGAGATTTCCCGCTCACGCTGCAGTACATCCTGCAGACC
TCGGCTAGCCTGCACGTGGTCGAAAAGACGACGTGGACGCTCGAACAGGT
CAACAAAACGTTGGACGACCTGGCAAGAGCCGGAAGCGATACAGTGCGCG
CGGAGGTGCTGCGGAGAATCCGAGTGGATTGCAGCGCAATAAACCAGAAG
TGGATCATGCGGGTCAACAAAACGTTGGACGACCTGGCAAGAGCCGGAAG
CGATACAGTGCGCGCGGAGGTGCTGCGGAGAATCCGAGTGGATTGCAGCG
CAATAAACCAGAAGTGGATCATGCGGATAATCCTGAAAAACTTGAAGATT
AAGCTAAAAAAGGACAGCGTGCTGAAGAAAATTCACCCAGACGCCTTGGA
GGAGTACAGCCGAACCACGAGATAATCCTGAAAAACTTGAAGATTAAGCT
AAAAAAGGACAGCGTGCTGAAGAAAATTCACCCAGACGCCTTGGAGGAGT
ACAGCCGAACCACGAGCCTCCGAAAGGTTTGCAGCACGTTTATCGGCCTT
CACAACTCCGTACGATTGAAGTCCAGTCTTGAGCCTCCGAAAGGTTTGCA
GCACGTTTATCGGCCTTCACAACTCCGTACGATTGAAGTCCAGTCTTGAG
GTGTTCACGAGCTTCTCTCCGATGCTTGCCGCGAACCTGTTCTACAATAT
GGACAAAATCGTGCCGCGGATGATGGGGCGACCTTTCTGCATGGACGTGA
AGCTGGACGGGGAGAGAATGCTGTGTCATCTCGAGGGGGGCAAGGTGTTC
ACGAGCTTCTCTCCGATGCTTGCCGCGAACCTGTTCTACAATATGGACAA
AATCGTGCCGCGGATGATGGGGCGACCTTTCTGCATGGACGTGAAGCTGG
ACGGGGAGAGAATGCTGTGTCATCTCGAGGGGGGCAAGATCAAGTGGTTC
ACGCGAAACGCGAAGGATTACTCGGAGAGGATCAAGTGGTTCACGCGAAA
CGCGAAGGATTACTCGGAGAGG
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