mRNA_H-elongata_contig128662.2107.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128662.2107.1
Unique NamemRNA_H-elongata_contig128662.2107.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: A0A6H5L6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.430e-22
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 LQKPGGIDLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIMLRK 168
            L  PG +DLGE+FAFWVSLDAF+VLSGAVLT+YVGISGL+ARMAKDRCLPQ MLRK
Sbjct:   19 LPTPG-LDLGEVFAFWVSLDAFVVLSGAVLTAYVGISGLLARMAKDRCLPQFMLRK 73
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: D7FXC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC3_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 6.200e-22
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 LQKPGGIDLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIMLRK 168
            L  PG +DLGEIFAFWVSLDAF+VLSGAVLT+YVGISGL+ARMAKDRCLPQ MLRK
Sbjct:  454 LPTPG-LDLGEIFAFWVSLDAFVVLSGAVLTAYVGISGLLARMAKDRCLPQFMLRK 508
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: A0A0S7ZLN4_9BACT (Amino acid permease n=1 Tax=Gemmatimonas sp. SG8_17 TaxID=1703355 RepID=A0A0S7ZLN4_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 3.200e-14
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 LQKPGGIDLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIML 162
            L + G I LG    +WVSLDA +VLSGAVLTSYVG++GL+ RM+ DRCLPQ++L
Sbjct:  251 LARMGTISLGRGLGWWVSLDAVLVLSGAVLTSYVGVTGLVRRMSLDRCLPQVLL 304
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: A0A836CNH3_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.210e-14
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   22 DLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIMLR 165
            +LG  F  WVSLDAF+VLSGAVLT+YVGI+GLI RMA DRCLPQ +LR
Sbjct:  371 NLGVAFEAWVSLDAFIVLSGAVLTAYVGITGLIRRMAMDRCLPQFLLR 418
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: A0A835YT58_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT58_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.000e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   13 GGIDLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIML 162
            GG  LG +   WVS+DAF+VLSGAVLT+YVGI+GL+  MA+DRCLPQ +L
Sbjct:  357 GGAHLGSLLMTWVSIDAFIVLSGAVLTAYVGITGLVRTMARDRCLPQFLL 406
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: A0A3M1D544_9DELT (APC family permease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1D544_9DELT)

HSP 1 Score: 73.2 bits (178), Expect = 1.120e-13
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 LQKPGGIDLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIMLRKVR 174
            L + G   LG++  FWVSLDA +VLSGAVLTS+VG+ GL+ RM+ DRCLPQ +L++ R
Sbjct:  296 LARMGERSLGDVLRFWVSLDAVLVLSGAVLTSFVGVVGLMRRMSLDRCLPQFLLKENR 353
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: A0A4Q6CMC8_9PROT (APC family permease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6CMC8_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 1.120e-13
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 LQKPGGIDLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIMLR 165
            L   GG  LG  F+ WV++DAF+VLSGAVLTS+VGI GL+ RM+ DRCLPQ +LR
Sbjct:  297 LATMGGNALGPWFSKWVAIDAFLVLSGAVLTSFVGIIGLVRRMSLDRCLPQFLLR 351
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: A0A4V2B3Y2_9PROT (APC family permease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4V2B3Y2_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 1.530e-13
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 LQKPGGIDLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIMLR 165
            L + GG  LG  F+ WV+++AF+VLSGAVLTS+VGI GL+ RMA DRCLPQ +LR
Sbjct:  297 LARMGGNALGGGFSKWVAINAFLVLSGAVLTSFVGIIGLVRRMALDRCLPQFLLR 351
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: A0A6L8DTH8_9BACT (APC family permease n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8DTH8_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 9.940e-13
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 LQKPGGIDLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIMLR 165
            L   GGI  GE  A+ +S+DA +VLSGAVLTSYVG++GL+ RM  DRCLPQ +L+
Sbjct:  264 LAHMGGIAAGEWLAWLISVDAILVLSGAVLTSYVGVTGLVRRMTLDRCLPQFLLK 318
[Close]
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Match: D3BU05_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BU05_POLPP)

HSP 1 Score: 70.5 bits (171), Expect = 9.970e-13
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   25 LGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLPQIML 162
            LGE FA W+S+DA +VLSG+V+TSYVG+ GL+ RMA DRCLPQ +L
Sbjct:  405 LGEWFAIWISIDACLVLSGSVITSYVGVIGLVRRMALDRCLPQFLL 450
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128662.2107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6K0_9PHAE1.430e-2283.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXC3_ECTSI6.200e-2285.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0S7ZLN4_9BACT3.200e-1462.96Amino acid permease n=1 Tax=Gemmatimonas sp. SG8_1... [more]
A0A836CNH3_9STRA3.210e-1475.00Amino acid permease-domain-containing protein n=1 ... [more]
A0A835YT58_9STRA6.000e-1466.00Amino acid permease-domain-containing protein n=1 ... [more]
A0A3M1D544_9DELT1.120e-1358.62APC family permease n=1 Tax=Deltaproteobacteria ba... [more]
A0A4Q6CMC8_9PROT1.120e-1363.64APC family permease n=1 Tax=Proteobacteria bacteri... [more]
A0A4V2B3Y2_9PROT1.530e-1363.64APC family permease n=1 Tax=Proteobacteria bacteri... [more]
A0A6L8DTH8_9BACT9.940e-1360.00APC family permease n=2 Tax=Acidobacteria bacteriu... [more]
D3BU05_POLPP9.970e-1367.39Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128662contigH-elongata_contig128662:404..583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue8.9e-18
Seed eggNOG ortholog2880.D7FXC3
EggNOG free text desc.Amino acid permease
EggNOG OGs28KN3@1,2QT3M@2759
Ec32 ortholog descriptionAmino acid/polyamine transporter I
Ec32 orthologEc-04_000070.6
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.4782703-CDS-H-elongata_contig128662:403..5831622929764.4782703-CDS-H-elongata_contig128662:403..583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128662 404..583 -
1691679148.7284682-CDS-H-elongata_contig128662:403..5831691679148.7284682-CDS-H-elongata_contig128662:403..583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128662 404..583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128662.2107.1prot_H-elongata_contig128662.2107.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128662 404..583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128662.2107.1

>prot_H-elongata_contig128662.2107.1 ID=prot_H-elongata_contig128662.2107.1|Name=mRNA_H-elongata_contig128662.2107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
LQKPGGIDLGEIFAFWVSLDAFMVLSGAVLTSYVGISGLIARMAKDRCLP
QIMLRKVRKR
back to top

mRNA from alignment at H-elongata_contig128662:404..583-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128662.2107.1 ID=mRNA_H-elongata_contig128662.2107.1|Name=mRNA_H-elongata_contig128662.2107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig128662:404..583- (Himanthalia elongata Himel1 dioecious)
CTGCAAAAACCGGGCGGCATTGACCTAGGCGAAATATTTGCGTTCTGGGT
GTCCCTCGACGCGTTCATGGTACTCTCCGGCGCCGTTCTGACGTCCTACG
TGGGCATCAGCGGACTGATCGCTAGAATGGCAAAGGACCGCTGCCTCCCG
CAGATCATGCTTCGAAAGGTACGCAAGCGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig128662:404..583-

>mRNA_H-elongata_contig128662.2107.1 ID=mRNA_H-elongata_contig128662.2107.1|Name=mRNA_H-elongata_contig128662.2107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig128662:404..583- (Himanthalia elongata Himel1 dioecious)
CTGCAAAAACCGGGCGGCATTGACCTAGGCGAAATATTTGCGTTCTGGGT
GTCCCTCGACGCGTTCATGGTACTCTCCGGCGCCGTTCTGACGTCCTACG
TGGGCATCAGCGGACTGATCGCTAGAATGGCAAAGGACCGCTGCCTCCCG
CAGATCATGCTTCGAAAGGTACGCAAGCGGCTGCAAAAACCGGGCGGCAT
TGACCTAGGCGAAATATTTGCGTTCTGGGTGTCCCTCGACGCGTTCATGG
TACTCTCCGGCGCCGTTCTGACGTCCTACGTGGGCATCAGCGGACTGATC
GCTAGAATGGCAAAGGACCGCTGCCTCCCGCAGATCATGCTTCGAAAGGT
ACGCAAGCGG
back to top