mRNA_H-elongata_contig12864.2106.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12864.2106.1
Unique NamemRNA_H-elongata_contig12864.2106.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.970e-15
Identity = 29/59 (49.15%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNT+K+AM  PQ+  W++A  K++ S + H V +L+P++SVPAG  V+GTRWV+++K D
Sbjct:  644 PNTYKQAMNSPQSTEWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTD 702
[Close]
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.360e-14
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNTFKEA+  P+  + K A  K++ SR KH VF+LVPITSVP   KV+GTR+VFK KAD
Sbjct:  380 PNTFKEAINSPETKQCKVAIGKELDSRAKHRVFKLVPITSVPKHEKVLGTRFVFKQKAD 438
[Close]
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.860e-13
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNT+ EAM  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  567 PNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625
[Close]
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.870e-13
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNT+ EAM  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  342 PNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 400
[Close]
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.870e-13
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNT+ EAM  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  567 PNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625
[Close]
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.870e-13
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNT+ EAM  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  567 PNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625
[Close]
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.880e-13
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNT+ EAM  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  567 PNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625
[Close]
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5KH19_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH19_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.360e-12
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNT+ EAM  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK   D
Sbjct:  147 PNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKNLD 205
[Close]
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5JYS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.470e-12
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNT+ EAM  PQ   WK A  KD+ +   H V+ LVP++SVP G K++ T++VFK K D
Sbjct:  348 PNTYDEAMSSPQRGEWKGACSKDMDNLRTHNVYNLVPLSSVPKGEKILATKFVFKKKLD 406
[Close]
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5KMR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR4_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.540e-12
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 PNTFKEAMGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 177
            PNT+ EAM  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++ FK K D
Sbjct:  303 PNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFGFKKKLD 361
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE4.970e-1549.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9R3_9PHAE2.360e-1461.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE2.860e-1350.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE92_9PHAE2.870e-1350.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRJ1_9PHAE2.870e-1350.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE2.870e-1350.85Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE2.880e-1350.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KH19_9PHAE1.360e-1249.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JYS3_9PHAE2.470e-1249.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMR4_9PHAE2.540e-1249.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12864contigH-elongata_contig12864:23..202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.4079483-CDS-H-elongata_contig12864:22..1811622929764.4079483-CDS-H-elongata_contig12864:22..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12864 23..181 -
1691679148.7084959-CDS-H-elongata_contig12864:22..1811691679148.7084959-CDS-H-elongata_contig12864:22..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12864 23..181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.4231591-UTR-H-elongata_contig12864:181..2021622929764.4231591-UTR-H-elongata_contig12864:181..202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12864 182..202 -
1691679148.7189426-UTR-H-elongata_contig12864:181..2021691679148.7189426-UTR-H-elongata_contig12864:181..202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12864 182..202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12864.2106.1prot_H-elongata_contig12864.2106.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12864 23..181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12864.2106.1

>prot_H-elongata_contig12864.2106.1 ID=prot_H-elongata_contig12864.2106.1|Name=mRNA_H-elongata_contig12864.2106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIK
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mRNA from alignment at H-elongata_contig12864:23..202-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12864.2106.1 ID=mRNA_H-elongata_contig12864.2106.1|Name=mRNA_H-elongata_contig12864.2106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig12864:23..202- (Himanthalia elongata Himel1 dioecious)
CCGAACACCTTCAAGGAGGCCATGGGTCTCCCCCAGGCGGCGCGTTGGAA
GGAAGCCTCAGACAAGGATATCACGAGTCGAGAAAAACACGGCGTCTTTG
AACTGGTACCGATTACCTCAGTCCCCGCGGGACACAAAGTTGTTGGCACG
AGATGGGTGTTCAAAATTAAGGCGGACAGT
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Coding sequence (CDS) from alignment at H-elongata_contig12864:23..202-

>mRNA_H-elongata_contig12864.2106.1 ID=mRNA_H-elongata_contig12864.2106.1|Name=mRNA_H-elongata_contig12864.2106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig12864:23..202- (Himanthalia elongata Himel1 dioecious)
ATGGGTCTCCCCCAGGCGGCGCGTTGGAAGGAAGCCTCAGACAAGGATAT
CACGAGTCGAGAAAAACACGGCGTCTTTGAACTGGTACCGATTACCTCAG
TCCCCGCGGGACACAAAGTTGTTGGCACGAGATGGGTGTTCAAAATTAAG
GCGGACAGTATGGGTCTCCCCCAGGCGGCGCGTTGGAAGGAAGCCTCAGA
CAAGGATATCACGAGTCGAGAAAAACACGGCGTCTTTGAACTGGTACCGA
TTACCTCAGTCCCCGCGGGACACAAAGTTGTTGGCACGAGATGGGTGTTC
AAAATTAAGGCGGACAGT
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