mRNA_H-elongata_contig128631.2105.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128631.2105.1
Unique NamemRNA_H-elongata_contig128631.2105.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: D7G4N5_ECTSI (3'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.350e-31
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:   13 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYIR 225
            +VVPPFPDRPTEGFL FN EL PMA AS GE RNSP SVEIARVIEIGVRDSQALDTEALCI GGEKV  +R
Sbjct:   67 EVVPPFPDRPTEGFLHFNVELGPMAAASVGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKVWQLR 138
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BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A6H5KDM4_9PHAE (RNase_PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM4_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.520e-27
Identity = 58/69 (84.06%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:   13 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVR 216
            +VVPPFPDRP EGFL FN EL PMA AS GE RNSP SVEIARVIEIGVRDSQALDTEALCI GGEK+R
Sbjct:   67 EVVPPFPDRPMEGFLHFNVELGPMAAASMGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKLR 135
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BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A7S1CIZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIZ9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.390e-21
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:   10 SKVVPPFPDRPTEGFLFFNAELSPMADASF-GERNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYIR 225
            ++VVPP+PDRPTEGFL FN ELSPMA   F   R SP +VEI R++E  +RD++A+DTEALCI  GEKV  +R
Sbjct:   60 AEVVPPYPDRPTEGFLMFNVELSPMASEKFEAGRPSPLAVEIGRIVERCLRDARAIDTEALCIVAGEKVWSLR 132
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BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A835ZEC1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.110e-20
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:   10 SKVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYIR 225
            ++VVPP+PDRPT+G L FN ELS MA+AS G  R SP + EI R+IE G+RDSQALDTE LCI  GEKV  +R
Sbjct:   67 AEVVPPYPDRPTDGALMFNVELSKMAEASVGLLRASPLATEITRIIERGIRDSQALDTETLCIVAGEKVWQLR 139
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BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A2D4C8I4_PYTIN (Exosome complex exonuclease RRP45-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8I4_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 4.730e-19
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   13 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 222
            ++VPPFPDRPTEGFL FN ELSPMA  +F   R SP ++E+AR+++ G+R+ +ALDTEAL I  GEKV  I
Sbjct:   70 EIVPPFPDRPTEGFLHFNVELSPMASQNFEVGRPSPLAIELARIVDRGIRECRALDTEALAIVAGEKVWSI 140
[Close]
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: K3X4Z2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4Z2_GLOUD)

HSP 1 Score: 89.4 bits (220), Expect = 4.820e-19
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   13 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 222
            ++VPPFPDRPTEGFL FN ELSPMA  +F   R SP +VE+AR+++ G+R+ +ALDTEAL I  GEKV  I
Sbjct:   70 EIVPPFPDRPTEGFLHFNVELSPMASQNFEVGRPSPMAVELARIVDRGIRECRALDTEALAIIAGEKVWAI 140
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BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A662Y5E3_9STRA (RNase_PH domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5E3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.020e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   13 KVVPPFPDRPTEGFLFFNAELSPMADASF--------GERNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 222
            ++VPPFPDRP+EGFL F  ELSPMA  SF        G  +S A+ E+AR++E GVR+S+ALDTEAL +  GEKV  I
Sbjct:   71 EIVPPFPDRPSEGFLHFAVELSPMASPSFEASASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAI 148
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BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A8K1C7Y8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7Y8_PYTOL)

HSP 1 Score: 87.8 bits (216), Expect = 1.660e-18
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   13 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 222
            ++VPPFPDRPTEGFL F+ ELSPMA  +F   R SP +VE+AR+++ G+R+ +ALDTEAL I  GEKV  I
Sbjct:   70 EIVPPFPDRPTEGFLHFSVELSPMASQNFEVGRPSPLAVELARIVDRGIRECRALDTEALAIVAGEKVWSI 140
[Close]
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: W2QSC8_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2QSC8_PHYPN)

HSP 1 Score: 86.7 bits (213), Expect = 4.030e-18
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   13 KVVPPFPDRPTEGFLFFNAELSPMADASF--------GERNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 222
            ++VPPFPDRPTEGFL F  ELSPMA  SF        G  +S A+ E+AR++E GVR+S+ALDTEAL +  GEKV  I
Sbjct:   12 EIVPPFPDRPTEGFLHFAVELSPMASPSFEASASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAI 89
[Close]
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: G4ZFL2_PHYSP (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZFL2_PHYSP)

HSP 1 Score: 86.7 bits (213), Expect = 4.450e-18
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   13 KVVPPFPDRPTEGFLFFNAELSPMADASF--------GERNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 222
            ++VPPFPDRPTEGFL F  ELSPMA  SF        G  +S A+ E+AR++E GVR+S+ALDTEAL +  GEKV  I
Sbjct:   70 EIVPPFPDRPTEGFLHFAVELSPMASPSFEAAASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAI 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4N5_ECTSI4.350e-3183.333'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocar... [more]
A0A6H5KDM4_9PHAE2.520e-2784.06RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S1CIZ9_9STRA3.390e-2161.64Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835ZEC1_9STRA1.110e-2064.38Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A2D4C8I4_PYTIN4.730e-1960.56Exosome complex exonuclease RRP45-like protein n=1... [more]
K3X4Z2_GLOUD4.820e-1961.97Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662Y5E3_9STRA6.020e-1956.41RNase_PH domain-containing protein (Fragment) n=2 ... [more]
A0A8K1C7Y8_PYTOL1.660e-1860.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2QSC8_PHYPN4.030e-1857.69Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
G4ZFL2_PHYSP4.450e-1857.69Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128631contigH-elongata_contig128631:810..1771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D7G4N5
KEGG koko:K03678,ko:K10397,ko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.U1 snRNA 3'-end processing
EggNOG OGsCOG2123@1,KOG1614@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRrp45 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-17_001830.1
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.3486154-CDS-H-elongata_contig128631:809..9141622929764.3486154-CDS-H-elongata_contig128631:809..914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128631 810..914 +
1691679148.6778424-CDS-H-elongata_contig128631:809..9141691679148.6778424-CDS-H-elongata_contig128631:809..914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128631 810..914 +
1622929764.3625405-CDS-H-elongata_contig128631:1636..17711622929764.3625405-CDS-H-elongata_contig128631:1636..1771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128631 1637..1771 +
1691679148.6897805-CDS-H-elongata_contig128631:1636..17711691679148.6897805-CDS-H-elongata_contig128631:1636..1771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128631 1637..1771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128631.2105.1prot_H-elongata_contig128631.2105.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128631 810..1771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128631.2105.1

>prot_H-elongata_contig128631.2105.1 ID=prot_H-elongata_contig128631.2105.1|Name=mRNA_H-elongata_contig128631.2105.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
SSRSKVVPPFPDRPTEGFLFFNAELSPMADASFGERNSPASVEIARVIEI
GVRDSQALDTEALCITGGEKVRYIRQGHP*
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mRNA from alignment at H-elongata_contig128631:810..1771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128631.2105.1 ID=mRNA_H-elongata_contig128631.2105.1|Name=mRNA_H-elongata_contig128631.2105.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=962bp|location=Sequence derived from alignment at H-elongata_contig128631:810..1771+ (Himanthalia elongata Himel1 dioecious)
TCGTCGCGCTCCAAGGTCGTGCCTCCATTTCCCGACCGCCCGACCGAAGG
CTTCCTGTTCTTCAACGCCGAGCTAAGTCCGATGGCGGATGCCAGCTTCG
GGGAGGTGCGCGAGCGGGATTGTTGGGAGTTGTTTCCCTTCTCGGATCAA
GGGACTGTTGCCGACCGTGGGCTGCGAGGGCGCCGGTTGAAATTTAGCCG
CAGGCAACACGAACGAAGCTATATCGCAGCACAACATGTTATGTCTGTGG
ATAGAGGGATCTATCTCAAAGGAACCCGACCGCACCGCGGAGAGACGGAG
AGAGATTTCCGCTTCGAGGAACACATATTTCGTCTGGAAAGATGATATTT
TTTCCCTATTTGGGCCGAATTTGCGCGTAAACGATGCGGGAGCAAAAGAT
GGGGGAAGGTGGGGGGTTACCTTTGCCGGAAGCGAGCTGGAAAAAAATAT
ATTGATATGTTGTATGGGAGTTGAGTGTACAGTAACTTTTACCTTCGGGG
TGGGGGGGGCGTAGTAAAGTTGTTGTGCCTTAGCTGGTAGACCATTGACC
ATGTGTCTTTGGGAGAACGGAGCACCGTTCCTTACCGGAGCGATCGCCGA
TCACCAATCGTTCCTTCCTTCATTCCTACCTTTGCCGATGGTAGTAGCGA
GGGGGGTTTCCATCATCCTGTCGAAATCACATTTGTTTTCACAACGGGAG
GGGCGGAGAAAAAAAACAGGAGAAAACGGCAAATATTGAAATGTAGTTAT
ATAATACAATACCATATAAGTAATATATATATATGTATATTCGTTTTTTC
CTCTATCTACGGCTTGTTTGACTGCAGCGGAATTCCCCGGCGTCAGTGGA
AATCGCCCGGGTCATCGAAATCGGCGTAAGGGATTCACAAGCCCTCGACA
CCGAGGCCCTGTGCATTACCGGCGGGGAGAAGGTGCGCTATATCCGTCAA
GGACATCCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig128631:810..1771+

>mRNA_H-elongata_contig128631.2105.1 ID=mRNA_H-elongata_contig128631.2105.1|Name=mRNA_H-elongata_contig128631.2105.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig128631:810..1771+ (Himanthalia elongata Himel1 dioecious)
TCGTCGCGCTCCAAGGTCGTGCCTCCATTTCCCGACCGCCCGACCGAAGG
CTTCCTGTTCTTCAACGCCGAGCTAAGTCCGATGGCGGATGCCAGCTTCG
GGGAGTCGTCGCGCTCCAAGGTCGTGCCTCCATTTCCCGACCGCCCGACC
GAAGGCTTCCTGTTCTTCAACGCCGAGCTAAGTCCGATGGCGGATGCCAG
CTTCGGGGAGCGGAATTCCCCGGCGTCAGTGGAAATCGCCCGGGTCATCG
AAATCGGCGTAAGGGATTCACAAGCCCTCGACACCGAGGCCCTGTGCATT
ACCGGCGGGGAGAAGGTGCGCTATATCCGTCAAGGACATCCCTGACGGAA
TTCCCCGGCGTCAGTGGAAATCGCCCGGGTCATCGAAATCGGCGTAAGGG
ATTCACAAGCCCTCGACACCGAGGCCCTGTGCATTACCGGCGGGGAGAAG
GTGCGCTATATCCGTCAAGGACATCCCTGA
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