mRNA_H-elongata_contig100195.21.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100195.21.1
Unique NamemRNA_H-elongata_contig100195.21.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 8.060e-29
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
            RYNEPTGVKYAKVRCLALLAD  TA+A+IAELGEYA D+D  LARQA+RAVGKIC RLP SAAAAIERLIDLM
Sbjct:  352 RYNEPTGVKYAKVRCLALLADSTTAEAIIAELGEYAGDMDHLLARQAMRAVGKICLRLPGSAAAAIERLIDLM 424
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BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A4D9CWN1_9STRA (B2-adapt-app_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWN1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.960e-15
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
            RYNEPT VKY K+  LA++A+  T   ++AEL EYA D+D E++R++IRA+G I FRLP +A   +ERL+  +
Sbjct:  349 RYNEPTFVKYEKIDILAIIANEETVGDIVAELAEYATDVDQEVSRRSIRAIGNIAFRLPSAAGMILERLVGFL 421
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BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A7S3SC85_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SC85_9SPIT)

HSP 1 Score: 70.9 bits (172), Expect = 9.930e-13
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
            RYNEP+ +K  K+  L  LAD N+A+ +I EL EY  D+D E++R+AIRA+GKI  R+P +A   +  L +L+
Sbjct:   19 RYNEPSYIKQVKIDILTALADSNSAEHIIGELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAELIVGSLTNLL 91
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BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A7S4RGM6_9DINO (AP complex subunit beta n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RGM6_9DINO)

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-12
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
            RYNEP+ +K  K+  L +LAD  +A+ V++EL EY  D+D E++R+AIRA+GKI  R+P +A   +  L  L+
Sbjct:  335 RYNEPSYIKTVKIEILTMLADAGSAEPVVSELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAEMIVGSLTSLL 407
[Close]
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A7S1KWR4_ALECA (AP complex subunit beta n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A7S1KWR4_ALECA)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
            RYNEP+ +K  K+  L  LAD+ +A+ ++AEL EY  D+D E++R+AIRA+GKI  R+P +A   +  L  L+
Sbjct:  399 RYNEPSYIKTVKIEILTWLADIGSAEPIVAELSEYVTDVDVEISRRAIRAIGKIAVRVPSTAELIVGSLTSLL 471
[Close]
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A812W4F6_9DINO (BETAA-AD protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812W4F6_9DINO)

HSP 1 Score: 70.5 bits (171), Expect = 1.830e-12
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
            RYNEP+ +K  K+  L +LAD N+A+ V+ EL EY  D+D E+AR+AIRA+GKI   +P ++   +  L  L+
Sbjct:  420 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTSLL 492
[Close]
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A813AIR6_SYMMI (DnaK protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813AIR6_SYMMI)

HSP 1 Score: 70.5 bits (171), Expect = 1.910e-12
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
            RYNEP+ +K  K+  L +LAD N+A+ V+ EL EY  D+D E+AR+AIRA+GKI   +P ++   +  L  L+
Sbjct: 1665 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTSLL 1737
[Close]
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A812LET1_9DINO (BETAA-AD protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812LET1_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 2.510e-12
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
            RYNEP+ +K  K+  L +LAD N+A+ V+ EL EY  D+D E+AR+AIRA+GKI   +P ++   +  L  L+
Sbjct:   16 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTGLL 88
[Close]
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A812INE5_SYMPI (ApdG protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812INE5_SYMPI)

HSP 1 Score: 69.7 bits (169), Expect = 3.500e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
            RYNEP+ +K  K+  L +LAD N+A+ V+ EL EY  D+D E+AR+AI+A+GKI   +P ++   +  L +L+
Sbjct:  633 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIQAIGKIAVHVPSTSEMIVSSLTNLL 705
[Close]
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A7S1C8U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8U9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.840e-12
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDL 222
            RYN+PT +K+ K+  L  +A+ + A  ++AEL EY  D+D E+AR AIRA+G++  R+PE+    IE L++L
Sbjct:  329 RYNDPTPMKHLKLEVLPQVANADNAGEIVAELSEYVSDVDAEMARHAIRAIGQLVVRVPEAGGRVIETLLEL 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH14_9PHAE8.060e-2984.93B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A4D9CWN1_9STRA1.960e-1550.68B2-adapt-app_C domain-containing protein n=2 Tax=M... [more]
A0A7S3SC85_9SPIT9.930e-1346.58Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4RGM6_9DINO1.000e-1245.21AP complex subunit beta n=1 Tax=Alexandrium monila... [more]
A0A7S1KWR4_ALECA1.010e-1245.21AP complex subunit beta n=2 Tax=Dinophyceae TaxID=... [more]
A0A812W4F6_9DINO1.830e-1245.21BETAA-AD protein (Fragment) n=1 Tax=Symbiodinium n... [more]
A0A813AIR6_SYMMI1.910e-1245.21DnaK protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A812LET1_9DINO2.510e-1245.21BETAA-AD protein n=3 Tax=Symbiodinium TaxID=2949 R... [more]
A0A812INE5_SYMPI3.500e-1243.84ApdG protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A7S1C8U9_9STRA8.840e-1244.44Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100195contigH-elongata_contig100195:112..336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue8.5e-26
Seed eggNOG ortholog2880.D8LNY8
Preferred nameAP4B1
KEGG koko:K12401
KEGG Pathwayko04142,map04142
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043424,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061938,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1061@2759
Ec32 ortholog descriptionCoatomer protein complex, beta sub-unit
Ec32 orthologEc-14_005780.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.393842-CDS-H-elongata_contig100195:111..3361622929544.393842-CDS-H-elongata_contig100195:111..336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100195 112..336 +
1691679062.576255-CDS-H-elongata_contig100195:111..3361691679062.576255-CDS-H-elongata_contig100195:111..336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100195 112..336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100195.21.1prot_H-elongata_contig100195.21.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100195 112..336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100195.21.1

>prot_H-elongata_contig100195.21.1 ID=prot_H-elongata_contig100195.21.1|Name=mRNA_H-elongata_contig100195.21.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MFRYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAI
RAVGKICFRLPESAAAAIERLIDLM
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mRNA from alignment at H-elongata_contig100195:112..336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100195.21.1 ID=mRNA_H-elongata_contig100195.21.1|Name=mRNA_H-elongata_contig100195.21.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig100195:112..336+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAGGTACAACGAACCGACGGGTGTGAAGTACGCGAAGGTTCGCTG
TCTCGCCTTGCTCGCCGACGTGAACACGGCGCAAGCCGTCATCGCGGAGC
TCGGGGAGTACGCCGTCGATATCGACCCGGAGCTGGCGAGGCAAGCCATC
CGGGCCGTGGGCAAGATTTGCTTCAGGCTTCCGGAATCGGCTGCGGCCGC
CATCGAGCGGCTAATCGACTTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig100195:112..336+

>mRNA_H-elongata_contig100195.21.1 ID=mRNA_H-elongata_contig100195.21.1|Name=mRNA_H-elongata_contig100195.21.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig100195:112..336+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAGGTACAACGAACCGACGGGTGTGAAGTACGCGAAGGTTCGCTG
TCTCGCCTTGCTCGCCGACGTGAACACGGCGCAAGCCGTCATCGCGGAGC
TCGGGGAGTACGCCGTCGATATCGACCCGGAGCTGGCGAGGCAAGCCATC
CGGGCCGTGGGCAAGATTTGCTTCAGGCTTCCGGAATCGGCTGCGGCCGC
CATCGAGCGGCTAATCGACTTGATGATGTTCAGGTACAACGAACCGACGG
GTGTGAAGTACGCGAAGGTTCGCTGTCTCGCCTTGCTCGCCGACGTGAAC
ACGGCGCAAGCCGTCATCGCGGAGCTCGGGGAGTACGCCGTCGATATCGA
CCCGGAGCTGGCGAGGCAAGCCATCCGGGCCGTGGGCAAGATTTGCTTCA
GGCTTCCGGAATCGGCTGCGGCCGCCATCGAGCGGCTAATCGACTTGATG
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