mRNA_H-elongata_contig128486.2094.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig128486.2094.1
Unique Name	mRNA_H-elongata_contig128486.2094.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 5.480e-51
Identity = 84/95 (88.42%), Postives = 93/95 (97.89%), Query Frame = 1

Query:    1 EIMGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            ++MG++VQPK+VFLAFTVDQGGNVVNACRNL VEVLKCNAHRLNSVTMWALGI+ S++TGENPAMEKLMKRLAA+VGVFSHSAVNNDELKDIQRL
Sbjct:   10 DMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRL 104

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.980e-49
Identity = 84/95 (88.42%), Postives = 93/95 (97.89%), Query Frame = 1

Query:    1 EIMGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            ++MG++VQPK+VFLAFTVDQGGNVVNACRNL VEVLKCNAHRLNSVTMWALGI+ S++TGENPAMEKLMKRLAA+VGVFSHSAVNNDELKDIQRL
Sbjct:  338 DMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRL 432

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.970e-34
Identity = 63/95 (66.32%), Postives = 80/95 (84.21%), Query Frame = 1

Query:    1 EIMGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            + MG+DV+PK+VFLAFTVDQGGNVVNAC+ LGV V+KCN HR+N+  +WALGI+ + +   N  M  LMK+LAA+VGVFSHSAVNND+LK++QRL
Sbjct:  348 DFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRL 440

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 9.620e-33
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 1

Query:    7 MGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            MG+ VQP +VFLAFTVDQG N++NAC  LGV V++CN HRLN+  +WALGI+   +   NPAM  LMK+LAA+VGVFSHSAVNNDELK++QRL
Sbjct:  157 MGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRL 247

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.250e-32
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 1

Query:    7 MGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            MG+ VQP +VFLAFTVDQG N++NAC  LGV V++CN HRLN+  +WALGI+   +   NPAM  LMK+LAA+VGVFSHSAVNNDELK++QRL
Sbjct:  352 MGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRL 442

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.240e-31
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 1

Query:    7 MGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            MG+ V+P +VFLAFTVDQGGNVVNAC  LGV+V+KCN HR+NS  +WALGI+ S  T  N  M  LMK+LAA+VGVFS SAVNN  LK++QRL
Sbjct:   16 MGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVNN-MLKELQRL 107

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 6.990e-31
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 1

Query:    7 MGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            MG+ V P N FLAFTVDQG N++NAC  L V V++CN HR+N+  +WALGI+   K  +NP M  LMK+LAA+VGVFSHSAVNNDELK++QRL
Sbjct:    1 MGESVVPSNDFLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGIA--AKGRKNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQRL 91

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.050e-30
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 1

Query:    1 EIMGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            ++MG  V+ ++VFLAFTVDQG NVVNAC  LGV V++CN HR+NS  +WALGI+ SV T +N    K MK+LAA+VGVFSHSAVNND LK++QRL
Sbjct:  159 DLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQRL 249

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.500e-30
Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 1

Query:    1 EIMGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            +++G  VQP +VFL FTVDQG N+VNA   LGV V++CN HR+NS  +WALGI+   +T +N  M  LMK+LAA VGVFSHSAVNND LK+IQRL
Sbjct:  156 DLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQRL 250

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BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 7.320e-30
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 1

Query:    1 EIMGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL 285
            ++MG  V+ ++VFLAFTVDQG NVVNAC  LGV V++CN HR+NS  +WALGI+ S  T +N    K MK+LAA+VGVFSHSAVNND LK++QRL
Sbjct:  159 DLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQRL 249

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot

BLAST of mRNA_H-elongata_contig128486.2094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5KAN7_9PHAE	5.480e-51	88.42	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KJ52_9PHAE	1.980e-49	88.42	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JRT6_9PHAE	2.970e-34	66.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTB8_9PHAE	9.620e-33	66.67	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JGG8_9PHAE	1.250e-32	66.67	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5KDJ6_9PHAE	3.240e-31	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAS2_9PHAE	6.990e-31	63.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZU3_9PHAE	2.050e-30	64.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXV5_9PHAE	2.500e-30	62.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQI6_9PHAE	7.320e-30	63.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig128486	contig	H-elongata_contig128486:1059..1346 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	288
Cds size	282
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929762.8784664-UTR-H-elongata_contig128486:1058..1064	1622929762.8784664-UTR-H-elongata_contig128486:1058..1064	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig128486 1059..1064 +
1691679148.326506-UTR-H-elongata_contig128486:1058..1064	1691679148.326506-UTR-H-elongata_contig128486:1058..1064	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig128486 1059..1064 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929762.8915768-CDS-H-elongata_contig128486:1064..1346	1622929762.8915768-CDS-H-elongata_contig128486:1064..1346	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig128486 1065..1346 +
1691679148.3339612-CDS-H-elongata_contig128486:1064..1346	1691679148.3339612-CDS-H-elongata_contig128486:1064..1346	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig128486 1065..1346 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig128486.2094.1	prot_H-elongata_contig128486.2094.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig128486 1065..1346 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig128486:1059..1346+
coding sequence from alignment at H-elongata_contig128486:1059..1346+

protein sequence of mRNA_H-elongata_contig128486.2094.1

>prot_H-elongata_contig128486.2094.1 ID=prot_H-elongata_contig128486.2094.1|Name=mRNA_H-elongata_contig128486.2094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MGDDVQPKNVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALG
ISDSVKTGENPAMEKLMKRLAAIVGVFSHSAVNNDELKDIQRL*

mRNA from alignment at H-elongata_contig128486:1059..1346+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig128486.2094.1 ID=mRNA_H-elongata_contig128486.2094.1|Name=mRNA_H-elongata_contig128486.2094.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig128486:1059..1346+ (Himanthalia elongata Himel1 dioecious)
GAGATTATGGGAGACGACGTGCAGCCGAAGAACGTCTTCCTTGCATTTAC
TGTAGACCAGGGCGGTAACGTGGTGAACGCTTGCCGAAACTTGGGTGTTG
AAGTGCTCAAATGCAATGCCCACCGGCTCAACTCCGTCACGATGTGGGCT
TTGGGGATAAGTGATTCGGTGAAAACGGGCGAAAACCCAGCCATGGAAAA
GCTGATGAAGAGGCTGGCGGCGATAGTAGGGGTATTCAGCCACTCCGCGG
TCAACAACGACGAGCTCAAGGACATCCAGAGATTGTAA

Coding sequence (CDS) from alignment at H-elongata_contig128486:1059..1346+

>mRNA_H-elongata_contig128486.2094.1 ID=mRNA_H-elongata_contig128486.2094.1|Name=mRNA_H-elongata_contig128486.2094.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig128486:1059..1346+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGACGACGTGCAGCCGAAGAACGTCTTCCTTGCATTTACTGTAGA
CCAGGGCGGTAACGTGGTGAACGCTTGCCGAAACTTGGGTGTTGAAGTGC
TCAAATGCAATGCCCACCGGCTCAACTCCGTCACGATGTGGGCTTTGGGG
ATAAGTGATTCGGTGAAAACGGGCGAAAACCCAGCCATGGAAAAGCTGAT
GAAGAGGCTGGCGGCGATAGTAGGGGTATTCAGCCACTCCGCGGTCAACA
ACGACGAGCTCAAGGACATCCAGAGATTGTAAATGGGAGACGACGTGCAG
CCGAAGAACGTCTTCCTTGCATTTACTGTAGACCAGGGCGGTAACGTGGT
GAACGCTTGCCGAAACTTGGGTGTTGAAGTGCTCAAATGCAATGCCCACC
GGCTCAACTCCGTCACGATGTGGGCTTTGGGGATAAGTGATTCGGTGAAA
ACGGGCGAAAACCCAGCCATGGAAAAGCTGATGAAGAGGCTGGCGGCGAT
AGTAGGGGTATTCAGCCACTCCGCGGTCAACAACGACGAGCTCAAGGACA
TCCAGAGATTGTAA