mRNA_H-elongata_contig128459.2092.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128459.2092.1
Unique NamemRNA_H-elongata_contig128459.2092.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128459.2092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128459contigH-elongata_contig128459:895..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128459.2092.1prot_H-elongata_contig128459.2092.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128459 923..1258 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.7360296-UTR-H-elongata_contig128459:894..9221622929762.7360296-UTR-H-elongata_contig128459:894..922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128459 895..922 +
1691679148.2932043-UTR-H-elongata_contig128459:894..9221691679148.2932043-UTR-H-elongata_contig128459:894..922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128459 895..922 +
1622929762.7753558-UTR-H-elongata_contig128459:1258..12771622929762.7753558-UTR-H-elongata_contig128459:1258..1277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128459 1259..1277 +
1691679148.308254-UTR-H-elongata_contig128459:1258..12771691679148.308254-UTR-H-elongata_contig128459:1258..1277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128459 1259..1277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.7623315-CDS-H-elongata_contig128459:922..12581622929762.7623315-CDS-H-elongata_contig128459:922..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128459 923..1258 +
1691679148.3007045-CDS-H-elongata_contig128459:922..12581691679148.3007045-CDS-H-elongata_contig128459:922..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128459 923..1258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128459.2092.1

>prot_H-elongata_contig128459.2092.1 ID=prot_H-elongata_contig128459.2092.1|Name=mRNA_H-elongata_contig128459.2092.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MAGKAAKCLATSIEEENMNFMDKCRKTSTTTTCDSVHGRVSGERRRTLRP
DKRHLLPAYLPRNARHARRQRPFMVVVAPGITVRNWARFRTTGLVGDVIE
VRSIVPSKEIL*
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mRNA from alignment at H-elongata_contig128459:895..1277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128459.2092.1 ID=mRNA_H-elongata_contig128459.2092.1|Name=mRNA_H-elongata_contig128459.2092.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=383bp|location=Sequence derived from alignment at H-elongata_contig128459:895..1277+ (Himanthalia elongata Himel1 dioecious)
CGTCACGATCGAGGGAGATTGAATCGCGATGGCCGGTAAGGCTGCCAAGT
GTCTAGCTACCAGCATCGAGGAAGAAAATATGAACTTCATGGACAAGTGT
AGGAAGACGTCAACAACAACGACATGTGACAGTGTTCATGGACGAGTGAG
TGGGGAAAGAAGGAGGACACTGCGACCCGACAAAAGACACCTACTACCTG
CTTACCTGCCGAGGAACGCGAGGCACGCGAGGCGCCAAAGACCATTCATG
GTGGTAGTAGCTCCGGGGATCACGGTACGAAACTGGGCACGGTTCAGGAC
GACTGGGCTTGTTGGGGATGTTATCGAGGTACGATCGATCGTCCCTTCCA
AAGAAATACTGTAGCGTCGAAACAACTAAAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig128459:895..1277+

>mRNA_H-elongata_contig128459.2092.1 ID=mRNA_H-elongata_contig128459.2092.1|Name=mRNA_H-elongata_contig128459.2092.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig128459:895..1277+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGGTAAGGCTGCCAAGTGTCTAGCTACCAGCATCGAGGAAGAAAA
TATGAACTTCATGGACAAGTGTAGGAAGACGTCAACAACAACGACATGTG
ACAGTGTTCATGGACGAGTGAGTGGGGAAAGAAGGAGGACACTGCGACCC
GACAAAAGACACCTACTACCTGCTTACCTGCCGAGGAACGCGAGGCACGC
GAGGCGCCAAAGACCATTCATGGTGGTAGTAGCTCCGGGGATCACGGTAC
GAAACTGGGCACGGTTCAGGACGACTGGGCTTGTTGGGGATGTTATCGAG
GTACGATCGATCGTCCCTTCCAAAGAAATACTGTAGATGGCCGGTAAGGC
TGCCAAGTGTCTAGCTACCAGCATCGAGGAAGAAAATATGAACTTCATGG
ACAAGTGTAGGAAGACGTCAACAACAACGACATGTGACAGTGTTCATGGA
CGAGTGAGTGGGGAAAGAAGGAGGACACTGCGACCCGACAAAAGACACCT
ACTACCTGCTTACCTGCCGAGGAACGCGAGGCACGCGAGGCGCCAAAGAC
CATTCATGGTGGTAGTAGCTCCGGGGATCACGGTACGAAACTGGGCACGG
TTCAGGACGACTGGGCTTGTTGGGGATGTTATCGAGGTACGATCGATCGT
CCCTTCCAAAGAAATACTGTAG
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