prot_H-elongata_contig128439.2090.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig128439.2090.1
Unique Nameprot_H-elongata_contig128439.2090.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length55
Homology
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 7.690e-17
Identity = 37/42 (88.10%), Postives = 42/42 (100.00%), Query Frame = 0
Query:    1 SQESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEELK 42
            +QESDFFDLLQLYFPKIYDIK+LVSSQ+GFHGGLNKLA++LK
Sbjct:  221 TQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLK 262          
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.000e-17
Identity = 37/42 (88.10%), Postives = 42/42 (100.00%), Query Frame = 0
Query:    1 SQESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEELK 42
            +QESDFFDLLQLYFPKIYDIK+LVSSQ+GFHGGLNKLA++LK
Sbjct:  224 TQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLK 265          
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.260e-11
Identity = 27/40 (67.50%), Postives = 37/40 (92.50%), Query Frame = 0
Query:    2 QESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEEL 41
            QE +FF LL+LYFP++YDIK+L++SQ+GFHGGLNKL ++L
Sbjct:  198 QEKEFFHLLKLYFPRLYDIKYLMASQDGFHGGLNKLGDDL 237          
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.140e-11
Identity = 26/40 (65.00%), Postives = 37/40 (92.50%), Query Frame = 0
Query:    2 QESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEEL 41
            QE DFF LL++YFP++YDIK+L+++Q+GFHGGLNKL ++L
Sbjct:  195 QEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDL 234          
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: A0A7S2V6J5_9STRA (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6J5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-9
Identity = 26/42 (61.90%), Postives = 37/42 (88.10%), Query Frame = 0
Query:    1 SQESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEELK 42
            ++E+ FF+LL+LYFP IYDIK+L++  +G HGGLNKLAE++K
Sbjct:  174 AEEAHFFELLRLYFPCIYDIKYLMTICDGIHGGLNKLAEDIK 215          
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: A0A812RI84_9DINO (CNOT7 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RI84_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 3.990e-9
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0
Query:    1 SQESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEELK 42
            ++ESDFFDLL LYFP IYD+K L++  + F GGLNKLA +L+
Sbjct:   89 TEESDFFDLLHLYFPCIYDVKMLMTESDTFKGGLNKLAADLE 130          
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: UPI000C1CE55C (probable CCR4-associated factor 1 homolog 7 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE55C)

HSP 1 Score: 58.2 bits (139), Expect = 1.400e-8
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query:    3 ESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEELK 42
            +SDFFDLL +YFP +YDIK L+   N  HGGLNKLAE L+
Sbjct:  187 QSDFFDLLNMYFPMVYDIKHLMKFCNNLHGGLNKLAELLE 226          
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: A0A6T9FJ50_9EUKA (Poly(A)-specific ribonuclease n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9FJ50_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 2.270e-8
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0
Query:    2 QESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEELK 42
            +E DFF  L+LYFP+IYDIK+L+ S  G  GGLNKLAE+L+
Sbjct:  217 EEDDFFSDLKLYFPQIYDIKYLMKSCEGLKGGLNKLAEDLE 257          
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: A0A8J2WTQ4_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTQ4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.240e-8
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    1 SQESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEELK 42
            S E  FF+LL +YFP+I+D+K +V+  +G HGGL ++AEELK
Sbjct:  236 STEEQFFELLHIYFPRIFDVKLVVTQVDGLHGGLQRIAEELK 277          
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Match: A0A4U5MPG5_POPAL (Poly(A)-specific ribonuclease n=2 Tax=Populus TaxID=3689 RepID=A0A4U5MPG5_POPAL)

HSP 1 Score: 57.0 bits (136), Expect = 3.540e-8
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 0
Query:    3 ESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEEL 41
            ++DFF L+++YFP +YDIK L+   NG HGGLNKLAE+L
Sbjct:  183 QADFFKLIKIYFPVLYDIKHLMKFCNGLHGGLNKLAEQL 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128439.2090.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIU5_ECTSI7.690e-1788.10Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A6H5JI77_9PHAE9.000e-1788.10Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A835Z498_9STRA2.260e-1167.50Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A836C813_9STRA3.140e-1165.00Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A7S2V6J5_9STRA1.590e-961.90Poly(A)-specific ribonuclease (Fragment) n=1 Tax=F... [more]
A0A812RI84_9DINO3.990e-961.90CNOT7 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
UPI000C1CE55C1.400e-865.00probable CCR4-associated factor 1 homolog 7 n=2 Ta... [more]
A0A6T9FJ50_9EUKA2.270e-863.41Poly(A)-specific ribonuclease n=2 Tax=Haptolina er... [more]
A0A8J2WTQ4_9STRA3.240e-854.76Poly(A)-specific ribonuclease n=1 Tax=Pelagomonas ... [more]
A0A4U5MPG5_POPAL3.540e-861.54Poly(A)-specific ribonuclease n=2 Tax=Populus TaxI... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..54
e-value: 1.4E-10
score: 42.9
NoneNo IPR availablePANTHERPTHR10797:SF0POP2, ISOFORM Ecoord: 3..43
IPR039637CCR4-NOT transcription complex subunit 7/8/Pop2PANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 3..43
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128439contigH-elongata_contig128439:590..754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128439.2090.1mRNA_H-elongata_contig128439.2090.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig128439 590..754 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig128439.2090.1 ID=prot_H-elongata_contig128439.2090.1|Name=mRNA_H-elongata_contig128439.2090.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
SQESDFFDLLQLYFPKIYDIKFLVSSQNGFHGGLNKLAEELKARQPQQQQ
QQQQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR039637CNOT7/CNOT8/Pop2
IPR012337RNaseH-like_sf