mRNA_H-elongata_contig10238.209.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10238.209.1
Unique NamemRNA_H-elongata_contig10238.209.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.500e-24
Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +R L+ SLMWLA  TR DIA++V A A Y   P   HW+A L I  ++  T+++ + F  GS  GL +  +ADA++A  + D RSVS G V+     M+W S TQKCVT ST EAE+++L D  K+ LF
Sbjct:   33 FRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLF 161
[Close]
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.730e-24
Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +R LV SLMWLA  TR DIA++V A A Y   P+L HW A + I      T+   + F  G+  GL L  YADA+FA  + D RSVS G V      ++W S TQKCVT ST EAE++ L D  K+ LF
Sbjct:  105 FRELVGSLMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 233
[Close]
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.890e-24
Identity = 57/129 (44.19%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +RAL+ SL+W+A++TR DIA++V A A Y  +P L HW+A L I  +   T+   + F  G  SG  L  +ADA++A  + D RSVS G V+     +AW S TQKCVT ST +AE++ + D  K+ LF
Sbjct:  163 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 291
[Close]
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5L7D7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.900e-24
Identity = 59/129 (45.74%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +RALV SL+W+A++TR DIA+SV A A Y   P L HWKA L I  +   T  + +    G  SG  L A+ DA++A  + D RSVS G V+     +AW S TQKCVT ST +AE++ + D  K+ LF
Sbjct:  768 FRALVGSLLWIALLTRPDIANSVRAVARYCSAPKLIHWKAALSILGYAVRTGSLGISIKRGTVSGFSLIAFVDADYASRAADRRSVSGGGVMCSGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 896
[Close]
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.530e-24
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +RALV SL+W+A++TR DIA+SV A A YS  P L HWKA L I  +   T+   + F  G  SG  L  + +A++A  + D RSVS G V+     +AW S TQKCVT ST +AE++ + D  K+ LF
Sbjct:  215 FRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 343
[Close]
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.600e-24
Identity = 60/129 (46.51%), Postives = 75/129 (58.14%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +R LV SLMWLA  TR DIA++V A A Y   P L HW A + I  +   T+   + F  G+  G  L  YADA+FA  + D RSVS G V      ++W S TQKCVT ST EAE++ L D  K+ LF
Sbjct:   99 FRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 227
[Close]
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.470e-23
Identity = 57/129 (44.19%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +RAL+ SL+W+A++TR DIA++V A A Y  +P L HW+A L I  +   T+   + F  G  SG  L  +ADA++A  + D RSVS G V+     +AW S TQKCVT ST +AE++ + D  K+ LF
Sbjct:  467 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 595
[Close]
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.550e-23
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +R LV SL+W+A++TR DIA+SV A A YS  P L HWKA L I  +   T+ + + F  G  SG  L A+ DA++A  + D RSVS G V+     +AW S TQ CVT ST ++E++ + D  K+ LF
Sbjct:  534 FRGLVGSLLWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILF 662
[Close]
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.160e-23
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +RALV SL+W+A++TR DIA+SV A A YS  P L HWKA L I  +   T+   + F  G  SG  L  + DA++A  + D RSVS G V+     +AW S  QKCVT ST  AEF+ + D  K+ LF
Sbjct:  217 FRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKAQKCVTLSTTPAEFVAVADMGKEILF 345
[Close]
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.980e-23
Identity = 60/129 (46.51%), Postives = 75/129 (58.14%), Query Frame = 1 
Query:    4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
            +R LV SLMWLA  TR DIA++V A A Y   P L HW A + I  +   T+   + F  G+  G  L  YADA+FA  + D RSVS G V      ++W S TQKCVT ST EAE++ L D  K+ LF
Sbjct:  241 FRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK6_9PHAE2.500e-2445.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLT9_9PHAE3.730e-2447.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWK8_9PHAE3.890e-2444.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L7D7_9PHAE5.900e-2445.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRZ9_9PHAE6.530e-2445.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KRB4_9PHAE8.600e-2446.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR13_9PHAE1.470e-2344.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWA6_9PHAE1.550e-2344.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KG67_9PHAE3.160e-2346.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE3.980e-2346.51Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10238contigH-elongata_contig10238:5960..6349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score75.1
Seed ortholog evalue2.5e-11
Seed eggNOG ortholog38033.XP_001222205.1
EggNOG free text desc.Reverse transcriptase domain protein
EggNOG OGs21GDZ@147550,39W4B@33154,3P15U@4751,3QR1M@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size363
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.8368683-UTR-H-elongata_contig10238:5959..59861622929561.8368683-UTR-H-elongata_contig10238:5959..5986Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10238 5960..5986 +
1691679071.128993-UTR-H-elongata_contig10238:5959..59861691679071.128993-UTR-H-elongata_contig10238:5959..5986Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10238 5960..5986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.8528237-CDS-H-elongata_contig10238:5986..63491622929561.8528237-CDS-H-elongata_contig10238:5986..6349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10238 5987..6349 +
1691679071.139124-CDS-H-elongata_contig10238:5986..63491691679071.139124-CDS-H-elongata_contig10238:5986..6349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10238 5987..6349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10238.209.1prot_H-elongata_contig10238.209.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10238 5987..6349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10238.209.1

>prot_H-elongata_contig10238.209.1 ID=prot_H-elongata_contig10238.209.1|Name=mRNA_H-elongata_contig10238.209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKF
IHGSGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTT
STCEAEFLTLCDASKDALFT*
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mRNA from alignment at H-elongata_contig10238:5960..6349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10238.209.1 ID=mRNA_H-elongata_contig10238.209.1|Name=mRNA_H-elongata_contig10238.209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig10238:5960..6349+ (Himanthalia elongata Himel1 dioecious)
CAATATCGTGCTCTCGTAGAGAGTCTGATGTGGTTGGCAATAATGACTAG
GCTTGATATAGCCAGTTCAGTTCACGCGTGCGCGCATTATAGCGATGACC
CTAGTCTGCGCCATTGGAAAGCGGTGCTGCAGATAGCCATGCATATGAAC
ATAACGAACGAAATATGTTTGAAATTCATTCATGGCTCTGGTCTTAGATT
GTCAGCGTACGCAGATGCTAATTTCGCGGTGGCATCGAACGATCTCAGGT
CCGTGTCTGATGGGGCAGTCATATTGGATGATACAGTTATGGCCTGGAAG
AGTAGTACGCAGAAATGCGTGACAACTTCAACGTGCGAAGCTGAGTTTCT
CACTCTATGCGATGCTTCTAAAGATGCGCTTTTTACATAA
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Coding sequence (CDS) from alignment at H-elongata_contig10238:5960..6349+

>mRNA_H-elongata_contig10238.209.1 ID=mRNA_H-elongata_contig10238.209.1|Name=mRNA_H-elongata_contig10238.209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig10238:5960..6349+ (Himanthalia elongata Himel1 dioecious)
ATGTGGTTGGCAATAATGACTAGGCTTGATATAGCCAGTTCAGTTCACGC
GTGCGCGCATTATAGCGATGACCCTAGTCTGCGCCATTGGAAAGCGGTGC
TGCAGATAGCCATGCATATGAACATAACGAACGAAATATGTTTGAAATTC
ATTCATGGCTCTGGTCTTAGATTGTCAGCGTACGCAGATGCTAATTTCGC
GGTGGCATCGAACGATCTCAGGTCCGTGTCTGATGGGGCAGTCATATTGG
ATGATACAGTTATGGCCTGGAAGAGTAGTACGCAGAAATGCGTGACAACT
TCAACGTGCGAAGCTGAGTTTCTCACTCTATGCGATGCTTCTAAAGATGC
GCTTTTTACATAAATGTGGTTGGCAATAATGACTAGGCTTGATATAGCCA
GTTCAGTTCACGCGTGCGCGCATTATAGCGATGACCCTAGTCTGCGCCAT
TGGAAAGCGGTGCTGCAGATAGCCATGCATATGAACATAACGAACGAAAT
ATGTTTGAAATTCATTCATGGCTCTGGTCTTAGATTGTCAGCGTACGCAG
ATGCTAATTTCGCGGTGGCATCGAACGATCTCAGGTCCGTGTCTGATGGG
GCAGTCATATTGGATGATACAGTTATGGCCTGGAAGAGTAGTACGCAGAA
ATGCGTGACAACTTCAACGTGCGAAGCTGAGTTTCTCACTCTATGCGATG
CTTCTAAAGATGCGCTTTTTACATAA
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