mRNA_H-elongata_contig12834.2088.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: A0A0G4IT20_PLABS (DUF4395 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IT20_PLABS) HSP 1 Score: 102 bits (255), Expect = 4.000e-24 Identity = 65/158 (41.14%), Postives = 85/158 (53.80%), Query Frame = 1
Query: 19 FTFPSPVNTSESRLHAFLVVVXXXXAAALSIISHFPWIWLYILYGYAARSLCGPRIDPQVRSG-FTALPVTITITISIR--FIPGTPKRFAQMLGLVFVLSSTILA-FLELYTAMLVVSGCMFAAASLWAFFGWCIACDVYMAFVRCHMLPPSVCEEC 480
F FP+PVN E+R H+ V + PW+ YILYG+AAR L GPRIDPQ F P+ + R F P PKRFAQ +GL+F L+ IL L L ++V GC+ AA L A G+C AC V+ +R ++P +VCE C
Sbjct: 38 FGFPNPVNQLEARSHSGCVTLLTILHIIFLYEFAVPWLGWYILYGFAARFLSGPRIDPQAYFVIFVVRPLLEDVLQVARSEFHPSPPKRFAQFVGLLFALAGNILYNVLHLTVPSIIVWGCLVVAAGLLALTGFCAACFVFSVGMRLGLVPKTVCESC 195
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: UPI001B2F5C2A (DUF4395 domain-containing protein n=1 Tax=Solirubrobacteraceae bacterium TaxID=2586742 RepID=UPI001B2F5C2A) HSP 1 Score: 95.9 bits (237), Expect = 4.150e-22 Identity = 61/154 (39.61%), Postives = 85/154 (55.19%), Query Frame = 1
Query: 22 TFPSPVNTSESRLHAFLVVVXXXXAAALSIISHFPWIWLYILYGYAARSLCGPRIDPQVRSGFTALPVTITITISIRFIPGTPKRFAQMLGLVFVLSSTILAF-LELYTAMLVVSGCMFAAASLWAFFGWCIACDVYMAFVRCHMLPPSVCEEC 480
+FP+PVN +R A LVV+ + L+I + PW+ + + G+ R L GPR DP G A V R +PG PKRFAQ +G VF + +L F L+ TA V G + AASL AF G+C+ C V+ +R ++P SVCE+C
Sbjct: 6 SFPNPVNELAARSVAGLVVL----TSVLAIAAQLPWLSIVLAVGFLLRVLWGPRFDPF---GQLATKVIAPRLGHARLVPGPPKRFAQGMGTVFTTVAALLFFALDATTAGYAVLGVLVVAASLEAFAGFCLGCQVFALLMRAGVIPESVCEDC 152
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: UPI001D10817C (DUF4395 domain-containing protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D10817C) HSP 1 Score: 92.4 bits (228), Expect = 1.540e-20 Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 1
Query: 19 FTFPSPVNTSESRLHAFLVVVXXXXAAALSIISHFPWIWLYILYGYAARSLCGPRIDPQVRSGFTALPVTITITISIRFIPGTPKRFAQMLGLVFVLSSTILAFLELYTAMLVVSGCMFAAASLWAFFGWCIACDVYMAFVRCHMLPPSVCEEC 480
F+FP+PVN +R A VVV A L + W+ + + YG+ AR L GP + P F V + +++PG PKRFAQ +G+VF ++S++L A +V + AA L A FG+C+ C ++ +R ++P SVCEEC
Sbjct: 19 FSFPNPVNDVAARTVATGVVVMALAVAVLG----WGWVLVPLTYGFVARVLTGPTLSPL--GTFATRVVASRLPQHAKYVPGPPKRFAQAIGVVFSVTSSVLWLAGATGASRIVVALLAGAAFLEAAFGFCLGCRIFAVLMRAGVIPESVCEEC 166
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: A0A0G4ISP6_PLABS (DUF4395 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISP6_PLABS) HSP 1 Score: 92.8 bits (229), Expect = 2.970e-20 Identity = 58/159 (36.48%), Postives = 85/159 (53.46%), Query Frame = 1
Query: 25 FPSPVNTSESRLHAFLVVVXXXXAAALSI---ISHFPWIWLYILYGYAARSLCGPRIDPQVRSGFTALPVTITITISIR---FIPGTPKRFAQMLGLVFVLSSTILAF-LELYTAMLVVSGCMFAAASLWAFFGWCIACDVYMAFVRCHMLPPSVCEEC 480
FP+PVN E+RLH+ V L +S W +ILYG+ AR + GPR DPQ L + + + F P PKRFAQ +G++F L++T++ L +V GC+ AAA++ A FG+C AC V+ V+ ++PP+ CE C
Sbjct: 40 FPNPVNELEARLHSACVTALTVAHIVLLYEYDVSALGW---FILYGFTARVVSGPRFDPQAYLVVLVLRPLLEDVLQVAKSSFKPSPPKRFAQFVGVLFALTATVIDHGFGLTFVSAIVWGCLAAAAAVLALFGFCAACYVFSLAVQAGIVPPAYCESC 195
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: A0A7Y3KTX4_9ACTN (DUF4395 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7Y3KTX4_9ACTN) HSP 1 Score: 89.4 bits (220), Expect = 1.640e-19 Identity = 53/158 (33.54%), Postives = 85/158 (53.80%), Query Frame = 1
Query: 7 VREFFTFPSPVNTSESRLHAFLVVVXXXXAAALSIISHFPWIWLYILYGYAARSLCGPRIDPQVRSGFTALPVTITITISIRFIPGTPKRFAQMLGLVFVLSSTILAFLELYTAMLVVSGCMFAAASLWAFFGWCIACDVYMAFVRCHMLPPSVCEEC 480
++ FF+FP+PVN + +R A VV L++++ W+ + + YG+ AR L GP I P + F I +F+PG PKRFAQ +G VF LS+ ++ ++ + + AASL F G+C+ C ++ +R ++P SVC EC
Sbjct: 1 MKNFFSFPNPVNDASARTVALGVVTM----TVLALLTRSAWLLIPLTYGFVARLLAGPTISPLGQ--FAVRVAGPRIDAWQKFVPGPPKRFAQGIGAVFSLSTCVVWLFAGWSTAQWILVPLVVAASLEGFLGFCLGCTIFGWLIRIGLVPESVCAEC 152
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: UPI001964EEB7 (DUF4395 family protein n=1 Tax=Glycomyces sp. YM15 TaxID=2800446 RepID=UPI001964EEB7) HSP 1 Score: 85.9 bits (211), Expect = 3.940e-18 Identity = 57/159 (35.85%), Postives = 81/159 (50.94%), Query Frame = 1
Query: 7 VREFFTFPSPVNTSESRLHAFLVVVXXXXAAALSIISHFPWIWLYILYGYAARSLCGPRIDPQVRSGFTALPVTITITISIRFIPGTPKRFAQMLGLVF-VLSSTILAFLELYTAMLVVSGCMFAAASLWAFFGWCIACDVYMAFVRCHMLPPSVCEEC 480
+R F+FP+PVN +RL A VV A A + W+ I G+ AR GP + V VT + + + +PG PKRFAQ +G VF V ++ +L +L A V G + AASL AFF +C+ C ++ R ++P SVCE C
Sbjct: 1 MRRLFSFPNPVNEVSARLVAGGVVAMSAAALAFQL----EWLVAVIALGFIARVASGPSLS--VLGQLVTRVVTPRLPAAPKMVPGPPKRFAQGIGAVFSVTAALLLLVFDLPVAGWFVLGALTVAASLEAFFAFCLGCKIFALLTRVGLIPDSVCEAC 153
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: A0A2E6WTV4_9CHLR (MFS transporter permease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E6WTV4_9CHLR) HSP 1 Score: 84.7 bits (208), Expect = 8.290e-18 Identity = 51/163 (31.29%), Postives = 89/163 (54.60%), Query Frame = 1
Query: 7 VREFFTFPSPVNTSESRLHAFLVVVXXXXAAALSIISHFPWIWLYILYGYAARSLCGPRIDPQVRSGFTALPVTITITISI-RFIPGTPKRFAQMLGLVFVLSSTILAFLELYTAMLVVSGCMFAAASLWAFF----GWCIACDVYMAFVRCHMLPPSVCEEC 480
+ FP+PVN +R AF+V+V + +++I + PW+ +LYG+ AR L GP++ P G + + + I + +PG PKRFAQ++GL+F S+ I + +Y V++ + S++AF G+C C V+ ++ ++P S+CE C
Sbjct: 1 MNNLLNFPNPVNEYAARTVAFMVLVL----SIMTLIFNSPWLSAILLYGFLARVLTGPKLSPM---GLLSTKIIVPYLIKKEKLVPGPPKRFAQLIGLIF--STAIFVSIAIYQIN-VLANTLLIILSIFAFLESILGFCAGCLVFKYLMKFKLIPDSICESC 153
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: A0A6I3XAJ7_9ACTN (DUF4395 family protein n=4 Tax=root TaxID=1 RepID=A0A6I3XAJ7_9ACTN) HSP 1 Score: 82.8 bits (203), Expect = 5.180e-17 Identity = 48/158 (30.38%), Postives = 87/158 (55.06%), Query Frame = 1
Query: 7 VREFFTFPSPVNTSESRLHAFLVVVXXXXAAALSIISHFPWIWLYILYGYAARSLCGPRIDPQVRSGFTALPVTITITISIRFIPGTPKRFAQMLGLVFVLSSTILAFLELYTAMLVVSGCMFAAASLWAFFGWCIACDVYMAFVRCHMLPPSVCEEC 480
+++FF+FP+PVN + +R A VV A +++ + PWI + + YG+ AR GP++ P F ++ + + G PKRFAQ +GL F +S++I+ ++A + + AAA+L F G+C+ C ++ ++ ++P VC +C
Sbjct: 1 MKQFFSFPNPVNDAAARTVALGVVAM----ATTALVFNQPWILIPLTYGFLARVAAGPKLSPL--GTFAVKIAAPRLSAWEKLVAGPPKRFAQCVGLAFSVSASIVYLTVGWSAARWILLPLVAAAALEGFVGYCLGCAMFGQLMKIGLIPEEVCADC 152
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: UPI001F4AB76B (DUF4395 domain-containing protein n=1 Tax=Glycomyces sp. L485 TaxID=2909235 RepID=UPI001F4AB76B) HSP 1 Score: 82.0 bits (201), Expect = 1.080e-16 Identity = 53/155 (34.19%), Postives = 81/155 (52.26%), Query Frame = 1
Query: 19 FTFPSPVNTSESRLHAFLVVVXXXXAAALSIISHFPWIWLYILYGYAARSLCGPRIDPQVRSGFTALPVTITITISIRFIPGTPKRFAQMLGLVFVLSSTILAF-LELYTAMLVVSGCMFAAASLWAFFGWCIACDVYMAFVRCHMLPPSVCEEC 480
F FP+PVN +RL A VV+ + ++I+ W+ I G+ AR GP V +T + ++ + +PG PKRFAQ +G VF L+ST+L F A +V G + AA+L A F +C+ C ++ R ++P +VCE C
Sbjct: 5 FQFPNPVNEVSARLVAAGVVLM----SVIAIVFRLEWLVAIIALGFIARVAAGPTFS--VLGQLVTKIITPRLPVAAKPVPGPPKRFAQGIGAVFSLASTVLLFGFGADLAAWIVLGALTIAAALEAAFAFCLGCKMFALLTRMGLIPEAVCEAC 153
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Match: A0A538LWA1_9ACTN (DUF4395 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LWA1_9ACTN) HSP 1 Score: 82.8 bits (203), Expect = 1.540e-16 Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 1
Query: 1 MTVREFFTFPSPVNTSESRLHAFLVVVXXXXAAALSIISHFPWIWLYILYGYAARSLCGPRIDPQVRSGFTALPVTITITISIRFIPGTPKRFAQMLGLVFVLSSTILAF-LELYTAMLVVSGCMFAAASLWAFFGWCIACDVYMAFVRCHMLPPSVCEEC 480
M VR+F +FP+PVN +R AF+V+V +A+ + + W+++ + YG+ AR L GPR+ P G A V + + +PG PKRFAQ +G ++AF L + + M AA L + C+ C+V+ +R ++P VC EC
Sbjct: 1 MAVRDFLSFPNPVNEKAARTVAFVVMV----VSAVGLATSTYWLFVPLAYGFVARVLAGPRLSPL---GRLASAVVAPRLGAPKPVPGPPKRFAQAIGATLSTLGVVVAFGLGAHGVGDALFALMIVAAGLESLAAVCLGCEVFALLMRAGLVPERVCLEC 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12834.2088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12834.2088.1 >prot_H-elongata_contig12834.2088.1 ID=prot_H-elongata_contig12834.2088.1|Name=mRNA_H-elongata_contig12834.2088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp MTVREFFTFPSPVNTSESRLHAFLVVVVIIVAAALSIISHFPWIWLYILYback to top mRNA from alignment at H-elongata_contig12834:6370..7708- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12834.2088.1 ID=mRNA_H-elongata_contig12834.2088.1|Name=mRNA_H-elongata_contig12834.2088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1339bp|location=Sequence derived from alignment at H-elongata_contig12834:6370..7708- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12834:6370..7708- >mRNA_H-elongata_contig12834.2088.1 ID=mRNA_H-elongata_contig12834.2088.1|Name=mRNA_H-elongata_contig12834.2088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig12834:6370..7708- (Himanthalia elongata Himel1 dioecious)back to top |