mRNA_H-elongata_contig128306.2084.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128306.2084.1
Unique NamemRNA_H-elongata_contig128306.2084.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: A0A6H5L774_9PHAE (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L774_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.200e-30
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEMER 210
            STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEG+LTPILVSLVSKESSK  SV MLDPSGNK++ K+M+R
Sbjct:  381 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGDLTPILVSLVSKESSKNSSVMMLDPSGNKNITKDMDR 450
[Close]
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: D7G115_ECTSI (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G115_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.200e-30
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEMER 210
            STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEG+LTPILVSLVSKESSK  SV MLDPSGNK++ K+M+R
Sbjct:  513 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGDLTPILVSLVSKESSKNSSVMMLDPSGNKNITKDMDR 582
[Close]
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: A0A835YTL2_9STRA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.970e-25
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEMER 210
            STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEG LTPILVSLV KE S   S  MLD +GNKD+KK+M+R
Sbjct:  160 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGGLTPILVSLVHKEKS---SGMMLDQTGNKDIKKDMDR 226
[Close]
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: B8BVL8_THAPS (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVL8_THAPS)

HSP 1 Score: 105 bits (263), Expect = 5.900e-25
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEME 207
            STFRHDLKIKTSDEGRVMKTAAAFAKG LELEG++ PILVSLV KE S  H   MLDPSGNK+VKK++E
Sbjct:  521 STFRHDLKIKTSDEGRVMKTAAAFAKGMLELEGDIPPILVSLVHKEKSSGH---MLDPSGNKEVKKDLE 586
[Close]
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: A0A7S1ZHS3_TRICV (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHS3_TRICV)

HSP 1 Score: 104 bits (260), Expect = 1.370e-24
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEME 207
            STFRHDLKIKTSDEGRVMKTAAAFAKG LELEGE+ PILVSLV KE +  H   MLDPSGNK+VK E+E
Sbjct:  137 STFRHDLKIKTSDEGRVMKTAAAFAKGLLELEGEIPPILVSLVHKEKNSDH---MLDPSGNKEVKGELE 202
[Close]
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: K0RYW0_THAOC (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RYW0_THAOC)

HSP 1 Score: 104 bits (260), Expect = 1.510e-24
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEMER 210
            STFRHDLKIKTSDEGRVMKTAAAFAKG LELEG++ PILVSLV KE    H   MLDPSGNK+VKK+++R
Sbjct:  925 STFRHDLKIKTSDEGRVMKTAAAFAKGMLELEGDVRPILVSLVHKEKDSHH---MLDPSGNKEVKKDLDR 991
[Close]
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: A0A7S1UZH4_9STRA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1UZH4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.840e-24
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEME 207
            STFRHDLKIKTSDEGRVMKTAAAFAKG LELEGE+ PILVSLV KE    H   MLDPSGNK+VK E++
Sbjct:  740 STFRHDLKIKTSDEGRVMKTAAAFAKGLLELEGEIPPILVSLVHKEKDSLH---MLDPSGNKEVKAELD 805
[Close]
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: A0A7S2PGC6_9STRA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PGC6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.220e-24
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEMER 210
            STFRHDLKIKTSDEGRVMKTAA+FAKG LELEG++ PILVSLV KE    H   MLDPSGNK+VK+E+ R
Sbjct:  361 STFRHDLKIKTSDEGRVMKTAASFAKGMLELEGDIPPILVSLVHKEKDSIH---MLDPSGNKEVKQELNR 427
[Close]
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: B5Y3G0_PHATC (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3G0_PHATC)

HSP 1 Score: 103 bits (256), Expect = 5.240e-24
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEME 207
            STFRHDLKIKTSDEGRVMKTAAAFAKG LELEG+L PILVSLV KE    H   MLDPSGNK+VK E++
Sbjct:  742 STFRHDLKIKTSDEGRVMKTAAAFAKGLLELEGDLPPILVSLVHKEKGSLH---MLDPSGNKEVKMELD 807
[Close]
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Match: A0A1E7FJ67_9STRA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJ67_9STRA)

HSP 1 Score: 102 bits (255), Expect = 7.100e-24
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKTHSVTMLDPSGNKDVKKEME 207
            STFRHDLKIKTSDEGRVMKTAAAFAKG LELEGE+ PILVSLV KE    H   MLDPSG+KDVK E++
Sbjct:  607 STFRHDLKIKTSDEGRVMKTAAAFAKGLLELEGEIPPILVSLVHKEKGSMH---MLDPSGDKDVKLELD 672
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128306.2084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L774_9PHAE3.200e-3087.14Inositol hexakisphosphate and diphosphoinositol-pe... [more]
D7G115_ECTSI3.200e-3087.14Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A835YTL2_9STRA2.970e-2581.43Inositol hexakisphosphate and diphosphoinositol-pe... [more]
B8BVL8_THAPS5.900e-2579.71Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A7S1ZHS3_TRICV1.370e-2479.71Inositol hexakisphosphate and diphosphoinositol-pe... [more]
K0RYW0_THAOC1.510e-2477.14Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A7S1UZH4_9STRA3.840e-2478.26Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A7S2PGC6_9STRA5.220e-2475.71Inositol hexakisphosphate and diphosphoinositol-pe... [more]
B5Y3G0_PHATC5.240e-2478.26Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A1E7FJ67_9STRA7.100e-2478.26Inositol hexakisphosphate and diphosphoinositol-pe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128306contigH-elongata_contig128306:1336..1551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog2880.D7G115
KEGG rclassRC00002
KEGG koko:K13024
KEGG ReactionR05799,R08964
KEGG Pathwayko04070,map04070
EggNOG free text desc.diphosphoinositol-pentakisphosphate kinase activity
EggNOG OGsKOG1057@1,KOG1057@2759
EC2.7.4.24
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.1448572-CDS-H-elongata_contig128306:1335..15511622929762.1448572-CDS-H-elongata_contig128306:1335..1551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128306 1336..1551 +
1691679148.078587-CDS-H-elongata_contig128306:1335..15511691679148.078587-CDS-H-elongata_contig128306:1335..1551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128306 1336..1551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128306.2084.1prot_H-elongata_contig128306.2084.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128306 1336..1551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128306.2084.1

>prot_H-elongata_contig128306.2084.1 ID=prot_H-elongata_contig128306.2084.1|Name=mRNA_H-elongata_contig128306.2084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
STFRHDLKIKTSDEGRVMKTAAAFAKGFLELEGELTPILVSLVSKESSKT
HSVTMLDPSGNKDVKKEMERR*
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mRNA from alignment at H-elongata_contig128306:1336..1551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128306.2084.1 ID=mRNA_H-elongata_contig128306.2084.1|Name=mRNA_H-elongata_contig128306.2084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig128306:1336..1551+ (Himanthalia elongata Himel1 dioecious)
AGCACGTTCCGACACGACCTGAAGATCAAGACTTCGGACGAGGGGCGAGT
CATGAAGACGGCAGCAGCGTTCGCCAAGGGTTTCCTAGAGCTAGAGGGGG
AGTTGACGCCGATACTGGTTAGCTTGGTGAGCAAGGAGAGCAGCAAAACC
CACAGCGTGACCATGCTCGATCCTTCGGGGAACAAGGACGTCAAGAAGGA
AATGGAGAGAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig128306:1336..1551+

>mRNA_H-elongata_contig128306.2084.1 ID=mRNA_H-elongata_contig128306.2084.1|Name=mRNA_H-elongata_contig128306.2084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig128306:1336..1551+ (Himanthalia elongata Himel1 dioecious)
AGCACGTTCCGACACGACCTGAAGATCAAGACTTCGGACGAGGGGCGAGT
CATGAAGACGGCAGCAGCGTTCGCCAAGGGTTTCCTAGAGCTAGAGGGGG
AGTTGACGCCGATACTGGTTAGCTTGGTGAGCAAGGAGAGCAGCAAAACC
CACAGCGTGACCATGCTCGATCCTTCGGGGAACAAGGACGTCAAGAAGGA
AATGGAGAGAAGGTGAAGCACGTTCCGACACGACCTGAAGATCAAGACTT
CGGACGAGGGGCGAGTCATGAAGACGGCAGCAGCGTTCGCCAAGGGTTTC
CTAGAGCTAGAGGGGGAGTTGACGCCGATACTGGTTAGCTTGGTGAGCAA
GGAGAGCAGCAAAACCCACAGCGTGACCATGCTCGATCCTTCGGGGAACA
AGGACGTCAAGAAGGAAATGGAGAGAAGGTGA
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