mRNA_H-elongata_contig102377.208.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102377.208.1
Unique NamemRNA_H-elongata_contig102377.208.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 6.520e-145
Identity = 216/254 (85.04%), Postives = 233/254 (91.73%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S AGVTGAR+ +P+DLK FVGRVRAATDKPLS  FGISS EQV+EVA +ADGVVVGS FM AVDE+  DAPASEIAAHL KFT  LKAG+ ++EMSF HTG++GL+Y+GKDVSGGYFGDFGGRYIPE LVEAHRELEEAYEAAK DPAFHEE+AWYRREYIGGPTPMYHAK L+E MGGAQIWLKREEL+HTGAHKINNAVGQALLAKRIGK RIIAETGAGQHGVATATVCALLGMEC+IYMGAVDCERQKLN
Sbjct:  237 SVAGVTGARSGLPADLKDFVGRVRAATDKPLSVGFGISSKEQVQEVAGIADGVVVGSAFMNAVDEVDADAPASEIAAHLKKFTEGLKAGITSAEMSFEHTGEQGLAYEGKDVSGGYFGDFGGRYIPETLVEAHRELEEAYEAAKADPAFHEEVAWYRREYIGGPTPMYHAKRLTEEMGGAQIWLKREELSHTGAHKINNAVGQALLAKRIGKNRIIAETGAGQHGVATATVCALLGMECIIYMGAVDCERQKLN 490          
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A835YTN0_9STRA (Tryptophan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN0_9STRA)

HSP 1 Score: 359 bits (922), Expect = 1.680e-116
Identity = 180/256 (70.31%), Postives = 205/256 (80.08%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLS--YQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S  GVTGART +P DLK+FV R+R+ TDKPL+  FGIS  E V  VA++ADGVV GS  M A+D+++PDA +++  AH+  FT  L  G+   +MS+ HTG E  S  Y   D+   YFG FGGRYIPE LVEAHRELE+AY  A+ DP FHEEIAWYR+EYIGGPT MYHAK LSE +GGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMEC++YMG VDCERQKLN
Sbjct:  253 SVTGVTGARTGLPDDLKQFVARIRSKTDKPLAVGFGISQPEHVNGVAELADGVVCGSAIMNAIDKISPDASSADKRAHIKAFTQSLTQGLKDGQMSYTHTGAEETSDAYAAADMKAAYFGAFGGRYIPETLVEAHRELEQAYAEAQADPKFHEEIAWYRKEYIGGPTVMYHAKRLSEQLGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECIVYMGEVDCERQKLN 508          
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: H6WB94_VAULI (Tryptophan synthase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB94_VAULI)

HSP 1 Score: 340 bits (873), Expect = 2.200e-110
Identity = 167/256 (65.23%), Postives = 202/256 (78.91%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEG--LSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S  GVTGART +P++LK+F+ R+R  TDKP++  FGIS    V++V+++ADG V GS  M  +D ++ +A  ++   H+ KFTA L   ++  ++++ HTG E     Y+  D+   YFGD+GGR+IPE LVEAHRELE+AYE A  DP FHEE+ WYR+EYIGGPT MYHAK LSE MGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMEC++YMG VDCERQKLN
Sbjct:  144 SVTGVTGARTGLPANLKEFIARIRTKTDKPIAVGFGISESSHVEQVSEIADGAVCGSAIMNHLDTISSEASPADKREHIKKFTANLTKDLNEGKLTYKHTGTENPYAEYKNADMRSAYFGDYGGRFIPETLVEAHRELEQAYEEALADPKFHEEVDWYRKEYIGGPTVMYHAKRLSEKMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECIVYMGEVDCERQKLN 399          
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: W7TQB9_9STRA (Tryptophan synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQB9_9STRA)

HSP 1 Score: 325 bits (833), Expect = 2.150e-103
Identity = 169/261 (64.75%), Postives = 197/261 (75.48%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGV-------DASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S  GVTG+R+ +P DLK FV R+RA TDK L+  FGIS+   V +VA +ADGVVVGS  + A+D   P +     AA +  F A LK G        DA  ++    G      + +DVS  +FG+FGGRYIPE LVEAHRELEEAYEAA  DPAF EE+A+YR++YIGGPTPMYHAK L+EA+GGAQIWLKREELAHTGAHKINNAVGQALLAKR+GK+RIIAETGAGQHGVATATVCAL+ MEC+IYMGA DCERQ LN
Sbjct:  232 SLTGVTGSRSDVPVDLKDFVARIRAVTDKNLAVGFGISTPTHVAQVAALADGVVVGSAILHAIDSAGPQSDTQARAAKVQAFIAELKGGAQKPGAAGDAGRVTHNGEGNGKAVAEDRDVSHRHFGEFGGRYIPETLVEAHRELEEAYEAALKDPAFQEEVAFYRKQYIGGPTPMYHAKRLTEAVGGAQIWLKREELAHTGAHKINNAVGQALLAKRLGKQRIIAETGAGQHGVATATVCALMDMECIIYMGAADCERQALN 492          
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A7S2UWZ9_9STRA (Tryptophan synthase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWZ9_9STRA)

HSP 1 Score: 305 bits (780), Expect = 8.410e-98
Identity = 155/254 (61.02%), Postives = 193/254 (75.98%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S  GVTG+RT +P+DL  F+ R+R  TD PL+  FGIS  + VK V+  ADG+VVGS  M  +D +  DAP ++  A +  F   +K     SE +F   G++  ++Q  + SG +FG+FGGRYIPE L+EAHRELEE YE AK DP F +EI +YRR++IGGPTP+Y A+ L++A+GGAQIWLKREELAHTGAHKINNAVGQA+LAKRIGK RIIAETGAGQHGVATATVCA  G++C++YMGAVDCERQ LN
Sbjct:  232 SLTGVTGSRTELPADLSDFLARIRKQTDLPLAVGFGISKPDHVKTVSANADGIVVGSAIMNTIDTVDADAPTADKCAAVKVFVESMKEARVPSE-NFQAGGEKKGAFQSPETSGSHFGEFGGRYIPETLIEAHRELEEEYEKAKVDPEFIKEIDFYRRQFIGGPTPLYFAERLTKAVGGAQIWLKREELAHTGAHKINNAVGQAILAKRIGKDRIIAETGAGQHGVATATVCAHFGLKCIVYMGAVDCERQALN 484          
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: D8LQU8_ECTSI (Tryptophan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU8_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 4.170e-91
Identity = 157/255 (61.57%), Postives = 178/255 (69.80%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLSYQGKDVS-GGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S  GVTGAR  +P  L+KF+ RVR AT KPLS  FGISS EQV+ VA +ADGVVVGS FM A+DE                          AS M         +  + K V  GG  G FGG YIPE LVEAHR LEEAY AAK DP F EE+AWYRREYIGGPTP++HAK LSE MGG QIWLKREE+AHTGA +INNA+ QALLAKR+GK R++A TG+GQHGVATAT CALLGMEC ++MGAVDC+RQKLN
Sbjct:  209 SVTGVTGARAHLPIGLEKFIRRVRRATGKPLSVGFGISSTEQVQAVAGIADGVVVGSAFMNAIDE--------------------------ASRMR--------IEGERKAVPPGGNIGAFGGCYIPETLVEAHRGLEEAYAAAKADPCFREELAWYRREYIGGPTPLHHAKSLSEEMGGGQIWLKREEMAHTGAQEINNAMAQALLAKRVGKTRVVAATGSGQHGVATATACALLGMECTVFMGAVDCQRQKLN 429          
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A8J5XVG6_DIALT (Tryptophan synthase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XVG6_DIALT)

HSP 1 Score: 292 bits (747), Expect = 5.090e-91
Identity = 158/261 (60.54%), Postives = 182/261 (69.73%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKF-------TAVLKAGVDASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S  GVTGAR  +P +L +F+ RVRA ++ PL+  FGI++   V E+A  ADGVVVGS   KAV+ +   A      A   +        TA  KA    +E       ++         +  +FG+FGGRYIPE LVEAHRELEEAY+ AK DPAFH E+A YR  YIGGPTPMYHAK LS  MGGAQIWLKREELAHTGAHKINNAVGQALLAKR+GKKRIIAETGAGQHGVATATVCALLG+ECV+YMGA D  RQ LN
Sbjct:  182 SLTGVTGARAELPKELPQFIKRVRANSNVPLAVGFGIATRAHVAEIATFADGVVVGSAVCKAVENVKDVADIRPTLAAFVQSLLPDSAQTATAKAARPGAENEEGALAQQNAKIDESVKAAAHFGEFGGRYIPETLVEAHRELEEAYDKAKKDPAFHAEVAEYRARYIGGPTPMYHAKRLSAEMGGAQIWLKREELAHTGAHKINNAVGQALLAKRLGKKRIIAETGAGQHGVATATVCALLGIECVVYMGAEDVRRQSLN 442          
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A7S0XDP8_9STRA (Tryptophan synthase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDP8_9STRA)

HSP 1 Score: 293 bits (749), Expect = 5.620e-91
Identity = 152/258 (58.91%), Postives = 185/258 (71.71%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVD----ASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S  GVTGAR  +PSDLK+FV R+R ++D PL+  FGIS+ E V +V+++A+GVV+GS  +  +D      P  E A  L  F + L   +     A +    HT         +D+S   FG+FGGRYIPE L+EAHRELE AY +A  DP FHEEIA+YRRE+ GGPTP+Y A+ L++ MGGA IW KREELAHTGAHKINNAVGQALLAKR+GK+RIIAETGAGQHGVATA VCA  G++C IYMGAVDCERQ LN
Sbjct:  236 SVTGVTGARGELPSDLKEFVNRIRKSSDVPLAVGFGISTPEHVHQVSEIAEGVVLGSAIISTIDSALDKTP-KERAKTLEDFISTLSVALTKRETAKDTENFHTDNSAPKPIHRDISNRNFGEFGGRYIPETLIEAHRELEAAYASAIADPKFHEEIAFYRREFTGGPTPLYFAENLTKKMGGADIWFKREELAHTGAHKINNAVGQALLAKRLGKRRIIAETGAGQHGVATAAVCAHFGLDCTIYMGAVDCERQALN 492          
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A7R9Y8B0_9STRA (Tryptophan synthase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8B0_9STRA)

HSP 1 Score: 286 bits (732), Expect = 9.900e-90
Identity = 159/259 (61.39%), Postives = 187/259 (72.20%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEG-LSYQGKDVSGGY----FGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S  G+TG       DL+ FVGRVR  TDKPL+  FGI + EQV EV+ +ADGVVVGS     V+ ++ D   +E AA+L +F A LK+GV       V  GK G LS    +    Y    FGDFGGRYIPE L+ AH ELE AY+ A  DPAF EEI +YRRE+IGGPTP+Y AK L+E  GGA+IWLKREELAHTGAHKINNAVGQALLAKR+GKKRIIAETGAGQHGVA+A VCALL ++  +YMGAVDC+RQ+LN
Sbjct:   94 SVTGITGGAGATAEDLQAFVGRVRKFTDKPLAVGFGIKTPEQVAEVSQIADGVVVGSAI---VNSVSLDKSLAENAAYLEEFCASLKSGVQERSEENV-AGKSGPLSEADAETLATYGDSHFGDFGGRYIPETLLRAHMELEAAYKEAMEDPAFKEEIDFYRREFIGGPTPLYLAKRLTEKCGGARIWLKREELAHTGAHKINNAVGQALLAKRLGKKRIIAETGAGQHGVASACVCALLDLDLTVYMGAVDCDRQRLN 348          
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A7S4DAV4_HETAK (Tryptophan synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAV4_HETAK)

HSP 1 Score: 288 bits (737), Expect = 4.180e-89
Identity = 156/259 (60.23%), Postives = 179/259 (69.11%), Query Frame = 1
Query:    1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLSYQGKDVSGGYFGD-----FGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762
            S  GVTGAR+ +P DL  FV R+R  TD PL+  FGIS  E V +V+ +ADGVVVGS  M  +D  A  + A E AA L  F   LK G            +   +Y     S  YFGD     FGGRYIPE L EAH ELE+AY  AK DPAF  E+ +YRRE++GGPTPMYHA+ LS+  GGAQIWLKREELAHTGAHKINNAVGQALL KR+GK R+IAETGAGQHGVATA VCA +G+ CV+YMGAVDCERQ LN
Sbjct:  226 SLTGVTGARSGLPDDLPDFVARIRGVTDMPLAVGFGISQPEHVAQVSKLADGVVVGSAIMNTIDGCAAGSSAQEKAAALEAFVGTLK-GACGEPAQTAGPARARGAYVAPPTST-YFGDDAQTGFGGRYIPETLAEAHVELEKAYAEAKADPAFQAEVDFYRREFVGGPTPMYHAERLSKHCGGAQIWLKREELAHTGAHKINNAVGQALLVKRMGKTRVIAETGAGQHGVATAAVCAHMGLPCVVYMGAVDCERQALN 482          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLB1_ECTSI6.520e-14585.04Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YTN0_9STRA1.680e-11670.31Tryptophan synthase n=1 Tax=Tribonema minus TaxID=... [more]
H6WB94_VAULI2.200e-11065.23Tryptophan synthase n=1 Tax=Vaucheria litorea TaxI... [more]
W7TQB9_9STRA2.150e-10364.75Tryptophan synthase n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S2UWZ9_9STRA8.410e-9861.02Tryptophan synthase (Fragment) n=1 Tax=Fibrocapsa ... [more]
D8LQU8_ECTSI4.170e-9161.57Tryptophan synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A8J5XVG6_DIALT5.090e-9160.54Tryptophan synthase n=1 Tax=Diacronema lutheri Tax... [more]
A0A7S0XDP8_9STRA5.620e-9158.91Tryptophan synthase n=1 Tax=Chromulina nebulosa Ta... [more]
A0A7R9Y8B0_9STRA9.900e-9061.39Tryptophan synthase n=1 Tax=Pinguiococcus pyrenoid... [more]
A0A7S4DAV4_HETAK4.180e-8960.23Tryptophan synthase n=1 Tax=Heterosigma akashiwo T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102377contigH-elongata_contig102377:274..2342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.5
Seed ortholog evalue3.4e-119
Seed eggNOG ortholog2880.D8LLB1
Preferred nameTRP5
KEGG rclassRC00209,RC00210,RC00700,RC00701,RC02868
KEGG koko:K01694,ko:K01695,ko:K01696,ko:K10882,ko:K13222
KEGG ReactionR00674,R02340,R02722
KEGG Pathwayko00260,ko00400,ko00402,ko01100,ko01110,ko01130,ko01230,ko03440,ko03460,map00260,map00400,map00402,map01100,map01110,map01130,map01230,map03440,map03460
KEGG ModuleM00023
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009606,GO:0009607,GO:0009617,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009683,GO:0009684,GO:0009719,GO:0009725,GO:0009735,GO:0009850,GO:0009851,GO:0009941,GO:0009987,GO:0010033,GO:0010817,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016830,GO:0016832,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0019904,GO:0031967,GO:0031975,GO:0032787,GO:0033036,GO:0033037,GO:0033554,GO:0033984,GO:0034641,GO:0034754,GO:0042221,GO:0042401,GO:0042430,GO:0042435,GO:0042445,GO:0042446,GO:0042545,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046219,GO:0046394,GO:0046483,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0065007,GO:0065008,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0098542,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.tryptophan synthase activity
EggNOG OGsCOG0133@1,COG0159@1,KOG1395@2759,KOG4175@2759
EC4.1.2.8,4.2.1.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size762
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102377.208.1prot_H-elongata_contig102377.208.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102377 274..2342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.756477-CDS-H-elongata_contig102377:273..4681622929561.756477-CDS-H-elongata_contig102377:273..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102377 274..468 +
1691679071.085394-CDS-H-elongata_contig102377:273..4681691679071.085394-CDS-H-elongata_contig102377:273..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102377 274..468 +
1622929561.7679682-CDS-H-elongata_contig102377:712..9181622929561.7679682-CDS-H-elongata_contig102377:712..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102377 713..918 +
1691679071.0982409-CDS-H-elongata_contig102377:712..9181691679071.0982409-CDS-H-elongata_contig102377:712..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102377 713..918 +
1622929561.780587-CDS-H-elongata_contig102377:1280..14221622929561.780587-CDS-H-elongata_contig102377:1280..1422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102377 1281..1422 +
1691679071.1069593-CDS-H-elongata_contig102377:1280..14221691679071.1069593-CDS-H-elongata_contig102377:1280..1422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102377 1281..1422 +
1622929561.7949548-CDS-H-elongata_contig102377:2123..23421622929561.7949548-CDS-H-elongata_contig102377:2123..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102377 2124..2342 +
1691679071.1173646-CDS-H-elongata_contig102377:2123..23421691679071.1173646-CDS-H-elongata_contig102377:2123..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102377 2124..2342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102377.208.1

>prot_H-elongata_contig102377.208.1 ID=prot_H-elongata_contig102377.208.1|Name=mRNA_H-elongata_contig102377.208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMA
DGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHT
GKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFH
EEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNA
VGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCER
QKLN
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mRNA from alignment at H-elongata_contig102377:274..2342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102377.208.1 ID=mRNA_H-elongata_contig102377.208.1|Name=mRNA_H-elongata_contig102377.208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2069bp|location=Sequence derived from alignment at H-elongata_contig102377:274..2342+ (Himanthalia elongata Himel1 dioecious)
AGTGCCGCCGGTGTGACGGGAGCGCGGACCACCATCCCCTCGGATCTGAA GAAATTCGTGGGGCGCGTTCGGGCGGCGACAGACAAGCCGCTTTCGGCCG CCTTTGGGATCAGCTCGGTCGAGCAAGTGAAGGAGGTTGCCGATATGGCG GACGGGGTCGTGGTGGGCTCGCCCTTTATGAAGGCCGTTGATGAGGTGAG GGTGGCAGACCATGGTTCGTCGATTGGGCACGCTCGCGTTCTGGAGTGTG GGGGTCAGAAGGGGCTTTGTCCATGATGGGGACTGTTTTTCGCAATGGTA ATGCGAATGGAACGGGCAGGCGGACATATAAAATTATTCCCGTTCGGAGA GCGACTAACGGTTACATAGCTAACCTAGCGATGATCTAAGCGGCGATTTT GTCGTCCCCTCTCTCCCCACTTCTGCGGACGAATATAAGATGGCTCCTGA CGCGCCCGCGTCGGAGATTGCGGCTCATCTCACTAAGTTTACGGCGGTAC TCAAGGCCGGGGTCGACGCATCGGAGATGTCCTTCGTGCACACCGGGAAG GAGGGGCTGTCGTACCAGGGGAAGGACGTGTCGGGGGGATACTTTGGGGA CTTCGGTGGGCGTTACATCCCGGAAATCCTCGTGGAGGCCCACAGGTGCG GGGTATGGGGGAGGTTGTATTGTGCGCAAGTCCTTCTGGTTGGTTTTCAA TACTAGATGACGCTTTTTGGTCGGTGGCCGGTGGCGTTGAGAGAGAGGAC AAATAAATTAATGGAATCGTATGAATGTTTTCGTCAGTCTAGGGCTAGGG CCGTATTGCCGGTGGAAAGAAACCAGCCAGAAACATCTTGTGTGTATGTG TTTTTGTGTAATCTGTGCCGAGGACGGTGGGGACATCAACATCTTTAGCG CACGTAAACCAACGACCGGCGGAGACACTCCCGTCTCGAAGCGCCCCAGT CCAACACTGTTCTCCCCCATGCATTATCCCGTGATCCTTGTCGTGGTCGC CGAAAAGAGAGTTGGAGGAGGCTTACGAGGCCGCGAAGAACGATCCTGCG TTCCACGAGGAGATCGCCTGGTATCGCCGGGAATACATCGGAGGCCCCAC CCCTATGTACCACGCCAAGGGTCTCTCGGAGGCCATGGGCGGCGCTCAGG TCAGCCCCTCTTGCGCTTGGATGGCCATATCATAGGCGACAGGGTTTATA TGGCACCCCCCCCCCCTGCCTAGAGTTCGCATGCAATACTGGTGTGAAGA GGAGCCGGTGTTCCTCGTGTCGATAGGGATACAGAGTGGTATGGTTTGTC AAGACAGAAAACCTCGACTACCTATTTCCCACATCGCAACTTCGATGTTG ACATACTTACGGCCTTCTGCTGCAAAGTTGAGTACTTTCGAAAGAATAGG ACGGCGGCGGGAGGGGGTTTCCGTCCCTTGAGTGTATAATTTAATTTATT TAGGACATACTTTATCGCCTGCGGTAAGCGTGCATCCTTCTGGAGTCGGT GATGCAACATGGTATGGGGATTGGGGGAGTCTCCTCTGGAGTTTAGCGTG GTGCATGTGCTTTCGTGTCGTCCTCTTCTTTTGAGAAAGTATTAAGCTCA TCTCCTCGCCTTGGTCTTTTTCGCATCACGCCCCCGTCACCGCCGCTATC GCGAAGGAGGCGCGACTACGAGAAACGTTCGTGAATATATGTCACACGGG CGACACGCGGGAAAGTCATCGTTCACTGCGCTGTCTTTTCGTTCAACCGT TTTCCCGCGAGCGGCAACTTCGCACCCGATGATCTTGTGTTTTTAGTCGG TATATTGTATTTTTTGCGCCGCCGGGGTGGTCCTACCGCCGAAAGTGCAG ATTTGGCTGAAGCGCGAGGAGCTTGCCCACACGGGGGCGCACAAGATCAA CAACGCCGTGGGCCAGGCACTCCTGGCGAAGCGCATCGGCAAGAAGCGCA TCATCGCCGAGACGGGCGCCGGGCAGCATGGCGTGGCCACCGCGACGGTC TGCGCCCTGTTGGGGATGGAGTGCGTGATCTACATGGGAGCCGTAGACTG CGAGCGGCAGAAGCTTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig102377:274..2342+

>mRNA_H-elongata_contig102377.208.1 ID=mRNA_H-elongata_contig102377.208.1|Name=mRNA_H-elongata_contig102377.208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig102377:274..2342+ (Himanthalia elongata Himel1 dioecious)
AGTGCCGCCGGTGTGACGGGAGCGCGGACCACCATCCCCTCGGATCTGAA
GAAATTCGTGGGGCGCGTTCGGGCGGCGACAGACAAGCCGCTTTCGGCCG
CCTTTGGGATCAGCTCGGTCGAGCAAGTGAAGGAGGTTGCCGATATGGCG
GACGGGGTCGTGGTGGGCTCGCCCTTTATGAAGGCCGTTGATGAGAGTGC
CGCCGGTGTGACGGGAGCGCGGACCACCATCCCCTCGGATCTGAAGAAAT
TCGTGGGGCGCGTTCGGGCGGCGACAGACAAGCCGCTTTCGGCCGCCTTT
GGGATCAGCTCGGTCGAGCAAGTGAAGGAGGTTGCCGATATGGCGGACGG
GGTCGTGGTGGGCTCGCCCTTTATGAAGGCCGTTGATGAGATGGCTCCTG
ACGCGCCCGCGTCGGAGATTGCGGCTCATCTCACTAAGTTTACGGCGGTA
CTCAAGGCCGGGGTCGACGCATCGGAGATGTCCTTCGTGCACACCGGGAA
GGAGGGGCTGTCGTACCAGGGGAAGGACGTGTCGGGGGGATACTTTGGGG
ACTTCGGTGGGCGTTACATCCCGGAAATCCTCGTGGAGGCCCACAGATGG
CTCCTGACGCGCCCGCGTCGGAGATTGCGGCTCATCTCACTAAGTTTACG
GCGGTACTCAAGGCCGGGGTCGACGCATCGGAGATGTCCTTCGTGCACAC
CGGGAAGGAGGGGCTGTCGTACCAGGGGAAGGACGTGTCGGGGGGATACT
TTGGGGACTTCGGTGGGCGTTACATCCCGGAAATCCTCGTGGAGGCCCAC
AGAGAGTTGGAGGAGGCTTACGAGGCCGCGAAGAACGATCCTGCGTTCCA
CGAGGAGATCGCCTGGTATCGCCGGGAATACATCGGAGGCCCCACCCCTA
TGTACCACGCCAAGGGTCTCTCGGAGGCCATGGGCGGCGCTCAGAGAGTT
GGAGGAGGCTTACGAGGCCGCGAAGAACGATCCTGCGTTCCACGAGGAGA
TCGCCTGGTATCGCCGGGAATACATCGGAGGCCCCACCCCTATGTACCAC
GCCAAGGGTCTCTCGGAGGCCATGGGCGGCGCTCAGATTTGGCTGAAGCG
CGAGGAGCTTGCCCACACGGGGGCGCACAAGATCAACAACGCCGTGGGCC
AGGCACTCCTGGCGAAGCGCATCGGCAAGAAGCGCATCATCGCCGAGACG
GGCGCCGGGCAGCATGGCGTGGCCACCGCGACGGTCTGCGCCCTGTTGGG
GATGGAGTGCGTGATCTACATGGGAGCCGTAGACTGCGAGCGGCAGAAGC
TTAACATTTGGCTGAAGCGCGAGGAGCTTGCCCACACGGGGGCGCACAAG
ATCAACAACGCCGTGGGCCAGGCACTCCTGGCGAAGCGCATCGGCAAGAA
GCGCATCATCGCCGAGACGGGCGCCGGGCAGCATGGCGTGGCCACCGCGA
CGGTCTGCGCCCTGTTGGGGATGGAGTGCGTGATCTACATGGGAGCCGTA
GACTGCGAGCGGCAGAAGCTTAAC
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