mRNA_H-elongata_contig128250.2080.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128250.2080.1
Unique NamemRNA_H-elongata_contig128250.2080.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: D8LL04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL04_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.280e-33
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    1 LKGAAHKGFSAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 225
            LKGAAHKG +AM+T D++GDLVCGG SDGSCTVWS +T RE+ARLTGHQQKV AV+FC +G R+VTGSQDCSIKV
Sbjct:  293 LKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTSREQARLTGHQQKVCAVSFCDTGQRLVTGSQDCSIKV 367
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BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: A0A5P6P248_9BRAD (CASPASE_P20 domain-containing protein n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A5P6P248_9BRAD)

HSP 1 Score: 53.5 bits (127), Expect = 1.750e-6
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   10 AAHKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 225
            A H+ +  SA  +AD    +  GGG D S  +W A + R  A  +GHQ+ V AVAF   GTR+++ S+D +IKV
Sbjct:  631 AGHRDYVVSASWSADSKRIVTGGGGRDKSVYLWDADSGRLLASFSGHQEDVEAVAFFPGGTRLISASEDKTIKV 704
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BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: UPI002012A5A2 (WD40 repeat domain-containing protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=UPI002012A5A2)

HSP 1 Score: 52.0 bits (123), Expect = 5.940e-6
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   16 HKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 225
            H+ +  SA  +AD    +  GGG D S  +W A + R  A   GHQ+ + AVAF   GTR+++ S+D +IKV
Sbjct:  291 HRDYVVSASWSADSKRIVTGGGGRDKSVNLWDADSGRLLASFVGHQEDIEAVAFFPGGTRLISASEDKTIKV 362
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BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: A0A2T2QBY6_9BRAD (CASPASE_P20 domain-containing protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A2T2QBY6_9BRAD)

HSP 1 Score: 52.0 bits (123), Expect = 6.110e-6
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   16 HKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 225
            H+ +  SA  +AD    +  GGG D S  +W A + R  A   GHQ+ + AVAF   GTR+++ S+D +IKV
Sbjct:  619 HRDYVVSASWSADSKRIVTGGGGRDKSVNLWDADSGRLLASFAGHQEDIEAVAFFPGGTRLISASEDKTIKV 690
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BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: UPI001FF03970 (WD40 repeat domain-containing protein n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=UPI001FF03970)

HSP 1 Score: 51.2 bits (121), Expect = 1.100e-5
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   16 HKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 225
            HK +  SA  +AD    +  GGG D S  +W A + R  A  TGH + V AVAF   GTR+++ S+D +I+V
Sbjct:  254 HKDYVVSASWSADGKRIVTGGGGRDKSVNLWDADSGRLLASFTGHLEDVEAVAFFPGGTRLISASEDRTIRV 325
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LL04_ECTSI2.280e-3377.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5P6P248_9BRAD1.750e-641.89CASPASE_P20 domain-containing protein n=5 Tax=Brad... [more]
UPI002012A5A25.940e-640.28WD40 repeat domain-containing protein n=3 Tax=Brad... [more]
A0A2T2QBY6_9BRAD6.110e-640.28CASPASE_P20 domain-containing protein n=2 Tax=Brad... [more]
UPI001FF039701.100e-541.67WD40 repeat domain-containing protein n=1 Tax=Brad... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128250contigH-elongata_contig128250:227..727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog2880.D8LL04
KEGG koko:K17890
KEGG Pathwayko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
GOsGO:0000045,GO:0000421,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006950,GO:0006952,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010498,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016740,GO:0019538,GO:0019776,GO:0019941,GO:0022607,GO:0030163,GO:0030587,GO:0031090,GO:0031154,GO:0032502,GO:0032991,GO:0034274,GO:0035973,GO:0042742,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0050830,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051703,GO:0051704,GO:0051707,GO:0061912,GO:0061919,GO:0070925,GO:0071704,GO:0071840,GO:0090382,GO:0090702,GO:0098542,GO:0098588,GO:0098657,GO:0098805,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905037,GO:1990234
EggNOG free text desc.negative stranded viral RNA replication
EggNOG OGsKOG0288@1,KOG0288@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-11_006240.3
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929761.6450999-CDS-H-elongata_contig128250:226..3791622929761.6450999-CDS-H-elongata_contig128250:226..379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128250 227..379 +
1691679147.8621497-CDS-H-elongata_contig128250:226..3791691679147.8621497-CDS-H-elongata_contig128250:226..379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128250 227..379 +
1622929761.6654294-CDS-H-elongata_contig128250:655..7271622929761.6654294-CDS-H-elongata_contig128250:655..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128250 656..727 +
1691679147.8725443-CDS-H-elongata_contig128250:655..7271691679147.8725443-CDS-H-elongata_contig128250:655..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128250 656..727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128250.2080.1prot_H-elongata_contig128250.2080.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128250 227..727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128250.2080.1

>prot_H-elongata_contig128250.2080.1 ID=prot_H-elongata_contig128250.2080.1|Name=mRNA_H-elongata_contig128250.2080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
LKGAAHKGFSAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQ
KVSAVAFCSSGTRIVTGSQDCSIKV
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mRNA from alignment at H-elongata_contig128250:227..727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128250.2080.1 ID=mRNA_H-elongata_contig128250.2080.1|Name=mRNA_H-elongata_contig128250.2080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig128250:227..727+ (Himanthalia elongata Himel1 dioecious)
TTGAAGGGAGCGGCCCACAAGGGGTTTTCCGCGATGGTGACGGCGGACGT
ATACGGGGATCTGGTGTGCGGCGGAGGTTCTGACGGTAGCTGCACCGTGT
GGAGCGCAAAAACTTGCCGGGAAAAGGCTCGGTTGACCGGTCACCAACAA
AAGGTCAGGGGAGGGGATGCATTGATCGATTGATTGATCCCCAAGGTACA
ACGCCTACGAACGTTACTGAAAGAGTAAAGTTTATGGCCTAGCCTTAAGC
GCTTCTTTTGCTTTCTCTGAACGAAGCATCATAATAATTTAGGGTGTTTT
TTCCTCAGTATGAAATAGATTCTGAAGCGATGACCTCCTCATTTTTTTCT
TCATCTTCACCGTTTCACTGAAATATCTTATCTCTTCGGCGTGCTTTTCG
GATTTCGAATTTCGGTCCGGTTTTGTTAGGTTTCCGCGGTGGCGTTTTGC
AGCTCGGGGACACGGATCGTCACGGGCAGCCAGGATTGCTCCATCAAGGT
A
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Coding sequence (CDS) from alignment at H-elongata_contig128250:227..727+

>mRNA_H-elongata_contig128250.2080.1 ID=mRNA_H-elongata_contig128250.2080.1|Name=mRNA_H-elongata_contig128250.2080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig128250:227..727+ (Himanthalia elongata Himel1 dioecious)
TTGAAGGGAGCGGCCCACAAGGGGTTTTCCGCGATGGTGACGGCGGACGT
ATACGGGGATCTGGTGTGCGGCGGAGGTTCTGACGGTAGCTGCACCGTGT
GGAGCGCAAAAACTTGCCGGGAAAAGGCTCGGTTGACCGGTCACCAACAA
AAGTTGAAGGGAGCGGCCCACAAGGGGTTTTCCGCGATGGTGACGGCGGA
CGTATACGGGGATCTGGTGTGCGGCGGAGGTTCTGACGGTAGCTGCACCG
TGTGGAGCGCAAAAACTTGCCGGGAAAAGGCTCGGTTGACCGGTCACCAA
CAAAAGGTTTCCGCGGTGGCGTTTTGCAGCTCGGGGACACGGATCGTCAC
GGGCAGCCAGGATTGCTCCATCAAGGTAGTTTCCGCGGTGGCGTTTTGCA
GCTCGGGGACACGGATCGTCACGGGCAGCCAGGATTGCTCCATCAAGGTA
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