mRNA_H-elongata_contig128202.2077.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128202.2077.1
Unique NamemRNA_H-elongata_contig128202.2077.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: A0A6H5LKM1_9PHAE (Abhydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKM1_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 8.670e-54
Identity = 95/149 (63.76%), Postives = 111/149 (74.50%), Query Frame = 1
Query:    4 GIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYPSWSSAYNGLPFPP--ALFGLVASLSRRRSRVMTIHGKDDETIPVADAYEFDRVLPNSELVVVEGATHRFSTAPEQVKVIEALTPY 444
            G   GAAAVL+YGEKFDDV L+VNVAGRFDTS+TPRSRFTEEQW+QLE+TGSF W      +        N   F    AL     + S  RS+V+TIHG +DETIPVADAYEFD+VLPN+ELVVVEGATHRF+T PEQV+V++AL  Y
Sbjct:   29 GHSKGAAAVLRYGEKFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEW------NVRGEDLTINKSDFEERAALNMKKTAASITRSKVLTIHGTEDETIPVADAYEFDKVLPNNELVVVEGATHRFATEPEQVEVMKALNRY 171          
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: D7FNQ6_ECTSI (Abhydrolase_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ6_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.570e-52
Identity = 96/149 (64.43%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    4 GIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYPSWSSAYNGLPFPP--ALFGLVASLSRRRSRVMTIHGKDDETIPVADAYEFDRVLPNSELVVVEGATHRFSTAPEQVKVIEALTPY 444
            G   GAAAVL+YGE FDDV L+VNVAGRFDTS+TPRSRFTEEQWNQLEETGSF W      +        N   F    AL     + S  RS+V+TIHG +DETIPVADAYEFD+VLPN+ELVVVEGATHRF+T PEQV+V++AL  Y
Sbjct:  164 GHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWNQLEETGSFEW------NVRGEDLTINKSDFEERAALNMKKTAASITRSKVLTIHGTEDETIPVADAYEFDKVLPNNELVVVEGATHRFATEPEQVEVMKALNRY 306          
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: A0A835ZJ96_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ96_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.370e-28
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    4 GIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYPSWSSAYNGLPFPPALFGLVASLSRRRSRVMTIHGKDDETIPVADAYEFDRVLPNSELVVVEGATHRFSTAPE 411
            G   GA AV+KY  K+DDV L+V VAGRFD SQTP SR+TEEQW QL E G+  W         S++     L    AL       +  +S+V  IHG  D+TIPV DA+EF + LP+S L ++EG +H F T+ E
Sbjct:  109 GHSKGACAVIKYAAKYDDVPLVVPVAGRFDMSQTPASRYTEEQWRQLREEGATQWVV----GGRSYTVRQADLDEKAALDMAAECAAIHKSKVHIIHGDADDTIPVRDAHEFHKHLPDSTLTIIEGGSHSFRTSAE 240          
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: A0A433P8Y5_9FUNG (Alpha/Beta hydrolase protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P8Y5_9FUNG)

HSP 1 Score: 107 bits (267), Expect = 2.570e-25
Identity = 62/155 (40.00%), Postives = 92/155 (59.35%), Query Frame = 1
Query:    4 GIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYPSWSSAYNGLPFPPALFGLVASLSR---RRSRVMTIHGKDDETIPVADAYEFDRVLPN-----SELVVVEGATHRFSTAPEQVKVIEALTPY 444
            G   GAAA L Y  + +DV L+VNV+GRFD ++ P  RFT+EQ  ++EE GSFVW ++    Y                  + A+  R    ++RV+T+HGK DET+PV DA+ F+R+L       +E+V+VEGA H FS+  EQ  ++EA++ +
Sbjct:  126 GHSKGAAATLLYAAEHNDVPLVVNVSGRFDHTRAPAIRFTKEQKREMEEKGSFVWKTYGRGEYVREYIVRKEDMEERKKLDMAAAARRIDTGKTRVLTVHGKADETVPVEDAWGFERILNAGGVQCNEVVLVEGAGHSFSSEEEQKGLVEAVSEW 280          
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: A0A397TKA3_9GLOM (Alpha/Beta hydrolase protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TKA3_9GLOM)

HSP 1 Score: 101 bits (252), Expect = 2.340e-23
Identity = 57/158 (36.08%), Postives = 90/158 (56.96%), Query Frame = 1
Query:    1 CGIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYPSWSSAYNGLPFPPALFGLVASLSRRRSRVMTIHGKDDETIPVADAYEFDRVL---PNSELVVVEGATHRFSTAPEQVKV-IEALTPYARGNPS 462
            CG   GAA VL Y  K++DV LIV+++ R+D +Q P +RFT EQ+ +L+  GSFVW  +  + Y         +        +V ++ +++ RV+T+HG  D+ IPV DAY FD++L   P  +LV+V+ A H +       K+ +EA+  +   N S
Sbjct:  104 CGHSKGAADVLLYASKYNDVPLIVSLSARYDHTQIPPNRFTPEQFEELQRKGSFVWVKYDNREYVIRQEDIKQIT--SLDMSVVKNIDKQKIRVLTVHGSKDKVIPVEDAYIFDKLLGPEPYHKLVIVQDAGHLYYDNMNHQKIMVEAINSWLDENKS 259          
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: A0A2Z6QJS8_9GLOM (Peptidase_S9 domain-containing protein n=3 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QJS8_9GLOM)

HSP 1 Score: 98.6 bits (244), Expect = 1.320e-22
Identity = 57/158 (36.08%), Postives = 91/158 (57.59%), Query Frame = 1
Query:    1 CGIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYPSWSSAYNGLPFPPAL-FGLVASLSRRRSRVMTIHGKDDETIPVADAYEFDRVL---PNSELVVVEGATHRFSTAPEQVKVIEALTPYARGNPS 462
            CG   GAA VL Y  K +DV LIV+++ R+D ++TP +RF+ EQ  +L++ GSFVW     +    +    + L    +L   +V S+ +++ + +TIHG  DE IPV +AY +D+++   P  +LV+V+ A H F     Q  + EA+T +   N S
Sbjct:   60 CGHSKGAAVVLLYASKCNDVPLIVSLSARYDHTETPSNRFSPEQLEKLQKKGSFVWLK---KGNIEYIIREDDLKKRNSLDMSVVESIDKQKVKALTIHGSKDEVIPVNEAYTYDKLIGPEPYHKLVIVQDANHCFDNINHQKIMTEAITSWLDENKS 214          
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: I0Z2I8_COCSC (Alpha/beta-hydrolase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z2I8_COCSC)

HSP 1 Score: 85.9 bits (211), Expect = 1.430e-17
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 1
Query:    4 GIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYPS---WSSAYNGLPFPPALFGLVASLSRRRSRVMTIHGKDDETIPVADAYEFDRVLPNSELVVVEGATHRF 396
            G     + V+ Y  K+DD+  +VN++GRFD  +  + RF  + + +LE  G  V  +WP         W+     +    +L     S + +RSRV TIHG  DETIP+ DA+ F   +PNSEL +V+GA H +
Sbjct:  106 GHSKAGSGVILYAAKYDDIPRVVNISGRFDNQRGIKERFGADIFERLEREGQ-VQITWPGSGPTKKFIWALTKEDMDNRMSLDMDPHSRAIKRSRVFTIHGSADETIPLEDAHSFHERIPNSELCIVDGACHNY 238          
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: A0A8J9WTJ7_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WTJ7_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 1.750e-16
Identity = 52/149 (34.90%), Postives = 77/149 (51.68%), Query Frame = 1
Query:    4 GIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYP--------SWSSAYNGLPFPPALFGLVASLSRRRSRVMTIHGKDDETIPVADAYEFDRVLPNSELVVVEGATHRFSTAPEQVKVI 426
            G     + V+ Y  K+DD+  +VNV+GRFD  +    RF  + +++LE+ G  V   WP +S P        +W+     +     L     S + + SRV TIHG  D TIPV DA+ F   + NSEL +V+GA H +   PE  K++
Sbjct:  198 GHSKAGSGVILYAAKYDDIPRVVNVSGRFDNQRGITERFGADIFDRLEKEGG-VQIVWPNRSNPDVDPLNKFTWTLTEEDMQNRMTLDMDPHSRAIKHSRVFTIHGSADATIPVEDAHSFHERIANSELCIVDGADHNYKK-PEHAKIL 344          
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: A0A6A3A7G1_HIBSY (Translation machinery-associated protein 22 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A7G1_HIBSY)

HSP 1 Score: 80.9 bits (198), Expect = 2.930e-15
Identity = 49/159 (30.82%), Postives = 77/159 (48.43%), Query Frame = 1
Query:    4 GIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYPSWSSAYNGLPFPPALFGLVASLSR----------RRSRVMTIHGKDDETIPVADAYEFDRVLPNSELVVVEGATHRFSTAPEQVKVIEALTPYAR 450
            G   G   VL Y  K+DD+  +VNV+GR+D  +    RF +   +++++ G           Y    +    + F      L+  LS           R  RV+T+HG  DETIPV DA+EF +++PN +L VVEGA H ++    Q ++   +  Y +
Sbjct:  159 GHSKGGDVVLVYASKYDDIHTVVNVSGRYDLKKGVEERFGKGSMDKIKDDG-----------YIDIKNKEGSVEFRVTKESLMDRLSLDMHETCFKIPRECRVLTVHGSADETIPVEDAFEFAKIIPNHKLHVVEGANHNYTK--HQTELASVVVNYLK 304          
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Match: A0A565CL57_9BRAS (Hydrolase_4 domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CL57_9BRAS)

HSP 1 Score: 78.6 bits (192), Expect = 1.130e-14
Identity = 45/138 (32.61%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    4 GIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEETGSFVWTSWPAQSYPSWSSAYNGLPFPPALFGLVASLSR------RRSRVMTIHGKDDETIPVADAYEFDRVLPNSELVVVEGATHRFS 399
            G   G   VL Y  K+ D+  ++N++GR+D  +    RF E+ + ++E+ G F+      +  P +     GL     + GL   + +      +  RV+T+HG +D+T+PV DA EF +++PN +L +VEGA H FS
Sbjct:  106 GHSKGGDVVLLYASKYRDIRNVINLSGRYDMRKGIVDRFGEDVFERIEKQG-FIDAKNHQKGKPGYRVTKEGL-----IEGLNTDMHQACLKIDKECRVLTVHGTEDKTVPVEDAKEFAKIIPNHKLEIVEGAGHSFS 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128202.2077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LKM1_9PHAE8.670e-5463.76Abhydrolase_4 domain-containing protein n=1 Tax=Ec... [more]
D7FNQ6_ECTSI1.570e-5264.43Abhydrolase_4 domain-containing protein n=1 Tax=Ec... [more]
A0A835ZJ96_9STRA1.370e-2846.32Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A433P8Y5_9FUNG2.570e-2540.00Alpha/Beta hydrolase protein n=1 Tax=Endogone sp. ... [more]
A0A397TKA3_9GLOM2.340e-2336.08Alpha/Beta hydrolase protein n=1 Tax=Glomus cerebr... [more]
A0A2Z6QJS8_9GLOM1.320e-2236.08Peptidase_S9 domain-containing protein n=3 Tax=Rhi... [more]
I0Z2I8_COCSC1.430e-1735.82Alpha/beta-hydrolase n=1 Tax=Coccomyxa subellipsoi... [more]
A0A8J9WTJ7_9CHLO1.750e-1634.90Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A6A3A7G1_HIBSY2.930e-1530.82Translation machinery-associated protein 22 n=1 Ta... [more]
A0A565CL57_9BRAS1.130e-1432.61Hydrolase_4 domain-containing protein n=1 Tax=Arab... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128202contigH-elongata_contig128202:512..1434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.3
Seed ortholog evalue2.7e-42
Seed eggNOG ortholog2880.D7FNQ6
KEGG koko:K02946,ko:K06889
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
EggNOG free text desc.thiolester hydrolase activity
EggNOG OGsCOG1073@1,KOG4667@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-01_004630.1
Exons2
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929761.399076-CDS-H-elongata_contig128202:511..6821622929761.399076-CDS-H-elongata_contig128202:511..682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128202 512..682 +
1691679147.8124099-CDS-H-elongata_contig128202:511..6821691679147.8124099-CDS-H-elongata_contig128202:511..682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128202 512..682 +
1622929761.4519668-CDS-H-elongata_contig128202:1137..14341622929761.4519668-CDS-H-elongata_contig128202:1137..1434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128202 1138..1434 +
1691679147.8234656-CDS-H-elongata_contig128202:1137..14341691679147.8234656-CDS-H-elongata_contig128202:1137..1434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128202 1138..1434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128202.2077.1prot_H-elongata_contig128202.2077.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128202 512..1434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128202.2077.1

>prot_H-elongata_contig128202.2077.1 ID=prot_H-elongata_contig128202.2077.1|Name=mRNA_H-elongata_contig128202.2077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
CGIDAGAAAVLKYGEKFDDVDLIVNVAGRFDTSQTPRSRFTEEQWNQLEE
TGSFVWTSWPAQSYPSWSSAYNGLPFPPALFGLVASLSRRRSRVMTIHGK
DDETIPVADAYEFDRVLPNSELVVVEGATHRFSTAPEQVKVIEALTPYAR
GNPST*
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mRNA from alignment at H-elongata_contig128202:512..1434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128202.2077.1 ID=mRNA_H-elongata_contig128202.2077.1|Name=mRNA_H-elongata_contig128202.2077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=923bp|location=Sequence derived from alignment at H-elongata_contig128202:512..1434+ (Himanthalia elongata Himel1 dioecious)
TGTGGAATTGATGCAGGTGCGGCTGCCGTTCTCAAGTACGGGGAGAAGTT TGACGATGTTGACCTGATCGTAAACGTCGCCGGGCGATTCGATACGAGTC AGACCCCGCGATCGCGCTTCACGGAAGAGCAATGGAATCAGCTGGAAGAG ACGGGCTCGTTCGTGTGGACCGTCAAGGTGTGGACCAGCATGGGCTTTAT TCAGAAGAGCGTTGTCCACATTCATGGTTGGTGACTCCTCCTCCGTGAAG CATGCTCGTCGCTATCGGCATGATGAGAAAGTGGATAATTTCCATCCAAT CTTCCGAGGGACGCGTGGTACGAGGAGGTAGATTCGGTATTTATTTATGC CACCTCGCGCACGGAACATTTTATTTCGTGATTTGTTTTGGTCCTCGTCG TGCCGCGGTCTCTCTTCTCAGGGCGAAGACCTAACCATCTACCGTCGCGA TTTCGAGGAACGAGCAGCGCTGGACATGCGGAGGACGGCCAAGGCGATCA AGTACGGAGTGGCGATGTGATGGTTAATTACTCCATGTACTATCAATACA TTTATGGCGGTGTGTTCGGTGCTGCCTCGACGATTTCCCCACCTCGGAGG ACGGCTCGCAAGGGTTGGGACGAGAGTCTTGGCCTGCTCAAAGCTATCCC TCGTGGTCTTCAGCTTACAATGGGCTCCCTTTCCCCCCCGCCTTGTTTGG TCTGGTCGCGTCCTTGTCGCGCAGGAGATCAAGGGTCATGACCATACACG GAAAAGACGACGAGACCATCCCTGTAGCTGACGCCTACGAGTTCGATCGA GTGCTGCCGAACAGCGAGCTCGTAGTCGTAGAGGGGGCTACGCACAGATT TTCTACGGCGCCCGAGCAAGTCAAAGTGATAGAGGCCTTAACCCCCTACG CTCGCGGGAACCCATCGACTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig128202:512..1434+

>mRNA_H-elongata_contig128202.2077.1 ID=mRNA_H-elongata_contig128202.2077.1|Name=mRNA_H-elongata_contig128202.2077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig128202:512..1434+ (Himanthalia elongata Himel1 dioecious)
TGTGGAATTGATGCAGGTGCGGCTGCCGTTCTCAAGTACGGGGAGAAGTT
TGACGATGTTGACCTGATCGTAAACGTCGCCGGGCGATTCGATACGAGTC
AGACCCCGCGATCGCGCTTCACGGAAGAGCAATGGAATCAGCTGGAAGAG
ACGGGCTCGTTCGTGTGGACCTGTGGAATTGATGCAGGTGCGGCTGCCGT
TCTCAAGTACGGGGAGAAGTTTGACGATGTTGACCTGATCGTAAACGTCG
CCGGGCGATTCGATACGAGTCAGACCCCGCGATCGCGCTTCACGGAAGAG
CAATGGAATCAGCTGGAAGAGACGGGCTCGTTCGTGTGGACCTCTTGGCC
TGCTCAAAGCTATCCCTCGTGGTCTTCAGCTTACAATGGGCTCCCTTTCC
CCCCCGCCTTGTTTGGTCTGGTCGCGTCCTTGTCGCGCAGGAGATCAAGG
GTCATGACCATACACGGAAAAGACGACGAGACCATCCCTGTAGCTGACGC
CTACGAGTTCGATCGAGTGCTGCCGAACAGCGAGCTCGTAGTCGTAGAGG
GGGCTACGCACAGATTTTCTACGGCGCCCGAGCAAGTCAAAGTGATAGAG
GCCTTAACCCCCTACGCTCGCGGGAACCCATCGACTTGATCTTGGCCTGC
TCAAAGCTATCCCTCGTGGTCTTCAGCTTACAATGGGCTCCCTTTCCCCC
CCGCCTTGTTTGGTCTGGTCGCGTCCTTGTCGCGCAGGAGATCAAGGGTC
ATGACCATACACGGAAAAGACGACGAGACCATCCCTGTAGCTGACGCCTA
CGAGTTCGATCGAGTGCTGCCGAACAGCGAGCTCGTAGTCGTAGAGGGGG
CTACGCACAGATTTTCTACGGCGCCCGAGCAAGTCAAAGTGATAGAGGCC
TTAACCCCCTACGCTCGCGGGAACCCATCGACTTGA
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