mRNA_H-elongata_contig12818.2076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12818.2076.1
Unique NamemRNA_H-elongata_contig12818.2076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: A0A6H5KH01_9PHAE (CHAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 2.540e-58
Identity = 148/388 (38.14%), Postives = 212/388 (54.64%), Query Frame = 2
Query:   11 LTNVLQMRRVIPKMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSKNFYPALIG-AGE-TVQRSFDLASESVETAGSSAAAE---FVLLPDGANHEVKIFDSLPVGNFVDLS--PPLPPVVNKFVARPEYVGTVDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRDLVDESSRYRRPTSGAGHLKHTEYFCRLIGSAIDMPAPGPTSPVAVNEFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRDCEARDSLIDLFDKLFRQSPHIWILQTVEQHPLDRTTKRFHNTHDRTCQVKPLQKEDAAKLLLHLFPREGRGFKSEEL--GVPRGSSIADCPSMMVNHPVLELVKGHPGTLV 1147
            L N+ Q   V  ++VF +SC S+  G+A V+AGV HVVAV  +  + D+ A+ F+K FY AL+  AG  TVQ++FD+A  +V      A  +   F+LLP G NH+V+IFD+LP G+FVD +  PP  P   + V  P Y G  +LQ+ VEM+VDP    +++ GE G GK+ RA + C+YVR R  FD ++            ++   T+    +   +  CRLIG AI M  PGP+S   +  FL +           KVLL LDD DSLF +   +ARD ++ L   L   S H+ +L T EQ     T +RF +  +R  +V+PL   DAA+LLL   P +   F  +EL   +    +  D    +  H VL+  +GHPGTL+
Sbjct:  125 LKNLFQAGGVQTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGSFTVQQAFDIALNTVNAHPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGSFVDETREPPARPRCARPV--PFYQGLEELQKVVEMLVDPVTACVTVTGEHGSGKSERAIQACDYVRMRHHFDALWWA--------DMKHAMATAINSSVWFYDDPCRLIGIAIGMTQPGPSSEEELVRFLFDRPTVQEGRTCHKVLLVLDDVDSLFEAGG-DARDRVLKLLSNLCSMSEHLKLLVTSEQSLQRDTNERFRHGSERVAKVRPLNDRDAAQLLLDKVPTK---FTKKELRLSLSHRCTREDILKALEAHRVLKAAEGHPGTLL 498          
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: A0A6H5KC67_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 7.500e-45
Identity = 145/408 (35.54%), Postives = 201/408 (49.26%), Query Frame = 2
Query:   47 KMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSKNFYPALIGAGETVQRSFDLASESVETAGSSAAAE---FVLLPDGANHEVKIF-----DSLPVGNF--------------------VDLSPPLPPVVNKFVARPEYVGTVDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCR----DLVDESSRY--RRPTSGAGHLKHTEYFCRLIGSAIDMPAPGPTSPVAVNEFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRDCEARDSLIDLFDKLFRQSP--HIWILQTVEQHPLDRTTKRFHNTHDRTCQVKPLQKEDAAKLLLHLFPREGRGFKSEELGVPRGS-SIADCPSMMVNHPVL-ELVK---GHPGTLV 1147
            ++VF  SC S++ G+  V AGV HVVAV     + D  AR+F+  FY ALI    TV+R+FD A   +         E   F+LLP G   E K F     + L +G F                    VD +  +PP      A   Y+G V +Q  V +++DP    +++ GEPG GKT  A + C+YVR+R  FD      C     D   E+       P   +G     E  CRLIG AI MP PGP++   +++F+  +  T   +   KVLL LD+ DSLF  RD +A+D L+ L   L       H+ +L T E + L R    F    +    VKPL+ + A++LL+   PR+    + EELG+  G  S AD  S + NHPVL E++K   GHPGTLV
Sbjct:   99 QLVFIGSCSSEVSGNVFVAAGVPHVVAVKHNSGVTDGAAREFATVFYDALIKHEVTVKRAFDTALICINAHRCPPKHEEDLFLLLPKG---EEKSFGCCTAERLRLGRFQHAPFQEDQPFVVEHVGGKLVDETRQVPPRPPCKKAVSSYMGLVRVQFVVRLLLDPQTVCVTVTGEPGSGKTELAIQACDYVRERHHFDSFLWADCDKAALDACPETFFVIPNSPNGASGDSVSLEDLCRLIGVAIGMPQPGPSTANELHQFIFKNPNTDSGQPFQKVLLVLDNVDSLF-ERDEDAQDRLVHLLSDLCSMGGGGHLKLLATSE-YKLLRGNGYFRGGSEMVATVKPLKMQHASELLMDNSPRD---LQPEELGLQSGGFSKADVVSAVENHPVLKEVLKIAGGHPGTLV 498          
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 9.680e-45
Identity = 137/396 (34.60%), Postives = 191/396 (48.23%), Query Frame = 2
Query:    8 ALTNVLQMRRVIPKMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSKNFYPALIGAGETVQRSFDLASESVETAGSSAAAEFVLLPDGANHEVKIFDSLPVGNFVDLSPPLPPVVNKFVARPEYVGTVDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRC-----RDLVDESSR--YRRPTSGAGHLKHTEYF--CRLIGSAIDMPAPGPTSPVAVNEFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRDCEARDSLIDLFDKL--FRQSPHIWILQTVEQHPLDRTTKRFHNTHDRTCQVKPLQKEDAAKLLLHLFPREGRGFKSEELGVPRGS-SIADCPSMMVNHPVL----ELVKGHPGTLV 1147
            +L+N+ Q   V  ++VF +SC S++ G A V AGV HVVAV  K  +                                                  G NH+V+IF++LP G  VD + P  P      A P Y G   LQ+ V +++D  A  ++I GEPG GKT RA + C+YVR+R RFD      C         D+S    +  PT     LK + +   CRLIG AI MP PGPTS   +++F+ N+  T   +   KVLL LD+ DSL   RD +A+D L+ L   L       H+ +L T E H L    +RF    +   +V+PL+   A++LL+   PR     +  ELG+  G  S+AD  + + NHPVL    E+ +GHPGTLV
Sbjct:   63 SLSNLFQAGGVRTELVFISSCSSEMSGRACVEAGVPHVVAVKHKANVT-------------------------------------------------GGNHDVRIFETLPEGQLVDETHPPTPRPPCKKAVPSYKGLAGLQQVVRLLLDERAACVTITGEPGSGKTERAIQACDYVRERHRFDCFLWADCDKAALNSCSDKSGNPFFALPTC----LKDSAWEDPCRLIGLAIGMPQPGPTSEQELHQFIFNNPNTDSGQPFQKVLLVLDNVDSLL-ERDGDAQDRLVQLLCNLCSIGDGGHLKLLATSE-HKLLSGHERFRGGTETVARVEPLETRHASELLMDNLPRN---LELTELGLESGGLSLADVLTAVQNHPVLKEVLEIAEGHPGTLV 400          
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.200e-33
Identity = 123/387 (31.78%), Postives = 173/387 (44.70%), Query Frame = 2
Query:   11 LTNVLQMRRVIPKMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSKNFYPALIG-AGE-TVQRSFDLASESVETAGSSAAAE---FVLLPDGANHEVKIFDSLPVGNFVDLS--PPLPPVVNKFVARPEYVGTVDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRDLVDESSRYRRPTSGAGHLKHTEYFCRLIGSAIDMPAPGPTSPVAVNEFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRDCEARDSLIDLFDKLFRQSPHIWILQTVEQHPLDRTTKRFHNTHDRTCQVKPLQKEDAAKLLLHLFPREGRGFKSE-ELGVPRGSSIADCPSMMVNHPVLELVKGHPGTLV 1147
            L N+ Q   V  ++VF +SC S+  G+A V+AGV HVVAV  +  + D+ A+ F+K FY AL+  AG  TV+++FD+A  +V      A  +   F+LLP G NH+V+IFD+LP G FVD +  PP  P   + V  P Y G  +LQ                                                                              IG AI M  PGP S   +  FL +           KVLL L+D DSLF +   +ARD ++ L   L  +  H+ +L T EQ     T +RF +  +R  +VKPL+  DAA+LL++  P   R  K E  L +    +  D    +  HPVL+  +GHPGTL+
Sbjct:   68 LKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAHPPHARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDETREPPARPRCARPV--PFYQGLEELQ------------------------------------------------------------------------------IGLAIGMTQPGPNSEEELVRFLFDRPTVQEGRTCQKVLLVLEDVDSLFEAGG-DARDRVLKLLSNLCSKGEHLKLLVTSEQRLQRDTNERFRHGSERVAKVKPLKDRDAAQLLINKVPT--RFTKKELRLSLSHRCTREDILKALEAHPVLKAAEGHPGTLL 371          
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: K8YZD6_NANGC (Sh2 domain containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZD6_NANGC)

HSP 1 Score: 137 bits (345), Expect = 3.660e-33
Identity = 111/378 (29.37%), Postives = 185/378 (48.94%), Query Frame = 2
Query:   47 KMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSKNFYPALIGAGETVQRSFDLASESV--ETAGSSAAAEFVLLPDGANHEVKIFDSLPVGNFVDLSPPL-------PPV--VNKFVARPEYVGTVDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRDLVDESSRYRRPTSGAGHLKHTEYFCRLIGSAIDMPAPGPTSPVAVNEFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRDCEARDSLIDLFDKLFRQSPHIWILQTVEQHPLDRTTKRFHNTHDRTCQVKPLQKEDAAKLLLHLFPREGRGFKSEELGVPRGSSIADCPSMMVNHPVLELVKGHPGTLV 1147
            ++VF ++  S+++G A + AGV HVVA+    ++ D+ A  F++ FY + I  G TV+++F++AS +   ET  SS   +F+LLP    H++ +FD   +G FVD SPP        PPV  V + VA  E +G + +       V    R I++ G PG+GKTA A KVC+Y+ +R +FD I++V  R     S  Y + T            C++IG+AI          +    FL+     SG     +V++ LD  D  F        +SL+ +   L  +   + +L T E   L   + R  ++ ++   + PL     A +L ++ P    GF  EE+     ++  +  + +   PV+  ++GHP  +V
Sbjct:   33 QLVFVSARHSEIVGRAFIAAGVRHVVAMKWDAKVSDRAACIFAEFFYLS-IAMGRTVRQAFEVASTAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDESPPPVPNTCDPPPVPFVGRNVAAQEVIGLLSM-------VSQGNRCITVRGRPGVGKTALASKVCQYLAERNQFDAIYMVPLRRKEYRS--YEKET-----------LCKVIGAAIGFEDASNEREIV---FLLQDKHPSG-----RVIMVLDGPDRFF-----NRSNSLVQVLSYLLSRIHGLHLLVTAEGSVLGSGSGRLESSSEKVVHLGPLSDVATAHMLANIAPP---GFDLEEMMSRPYATREEAYAELAASPVIRELRGHPKAIV 373          
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: W7U5S9_9STRA (Sh2 domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5S9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.220e-32
Identity = 114/390 (29.23%), Postives = 189/390 (48.46%), Query Frame = 2
Query:   11 LTNVLQMRRVIPKMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSKNFYPALIGAGETVQRSFDLASESV--ETAGSSAAAEFVLLPDGANHEVKIFDSLPVGNFVDLSPPL-------PPV--VNKFVARPEYVGTVDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRDLVDESSRYRRPTSGAGHLKHTEYFCRLIGSAIDMPAPGPTSPVAVNEFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRDCEARDSLIDLFDKLFRQSPHIWILQTVEQHPLDRTTKRFHNTHDRTCQVKPLQKEDAAKLLLHLFPREGRGFKSEELGVPRGSSIADCPSMMVNHPVLELVKGHPGTLV 1147
            LT +     V  ++VF ++  S+++G A + AGV HVVA+    ++ D+ A  F++ FY + I  G TV+++F++AS +   ET  SS   +F+LLP    H++ +FD   +G FVD SPP        PPV  V + VA  E +G + +       V    R I++ G PG+GKTA A KVC+Y+ +R +FD I++V  R     S  Y + T            C++IG+AI          +    FL+     SG     +V++ LD  D  F        +SL+ +   L  +   + +L T E   L   + R  ++ ++   + PL     A +L ++ P    GF  EE+     ++  +  + +   PV+  ++GHP  +V
Sbjct:  163 LTELFAAGGVRTQLVFVSARHSEIVGRAFIAAGVRHVVAMKWDAKVSDRAACIFAEFFYLS-IAMGRTVRQAFEVASTAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDESPPPVPNTCDPPPVPFVGRNVAAQEVIGLLSM-------VSQGNRCITVRGRPGVGKTALASKVCQYLAERNQFDAIYMVPLRRKEYRS--YEKET-----------LCKVIGAAIGFEDASNEREIV---FLLQDKHPSG-----RVIMVLDGPDRFF-----NRSNSLVQVLSYLLSRIHGLHLLVTAEGSVLGSGSGRLESSSEKVVHLGPLSDVATAHMLANIAPP---GFDLEEMMSRPYATREEAYAELAASPVIRELRGHPKAIV 515          
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: A0A7S0FB49_9STRA (Hypothetical protein n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0FB49_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.970e-18
Identity = 99/346 (28.61%), Postives = 157/346 (45.38%), Query Frame = 2
Query:   47 KMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSKNFYPALIGAGETVQRSFDLASESVETAGS-----SAAAEFVLLPDGANHEVKIFDSLPVGNFVDLS----------PPLPPVVNKFVARPEYVGTVDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRRR----FDKIFVVRCRDLVDESSRYRRPTSGAGHLKHTEYFCRLIGSAIDMPAPGPTSPVAV---NEFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRDCEARDSLIDLFDKLFRQSPHIWILQTVEQHPLDRTTKRFHNTHDRTCQVKPLQKEDAAKLLLHLFP 1018
            K VF ++C SKL G+  VNAGV HVV    + QL D  A  F++ FY AL   G TV  SF++  ++V  A S         +F+LLP+   H+V + D  P+  +   +            LP +   F+ R      VD+ R +  V+    RFIS++G+ G+G ++ A  +C Y+ +R+      + IF VR             P  G  HL+   +   L    +   A G TSP+ V   ++ +  S  TS      K L+  D AD+L   +D +     +     LF ++ ++ +L T +Q  L  ++ R    H  T  + PL  +   +L + L P
Sbjct:  661 KFVFVSACHSKLAGETFVNAGVPHVVCCQQESQLMDSAALVFTRAFYLALA-IGRTVADSFEIGRQAVAVAPSVPDSVQEMKKFILLPENGKHDVPVIDVEPLSEWPGRTGLKENRQNEVQGLPSLPQGFIGR-----EVDMYRLINDVL--TKRFISLVGDVGIGVSSLASAICHYISERKSTMIAIETIFYVRA-----------LPLRGDIHLR--SFTIPLHNQLV---AAGLTSPLGVEASDDEIFQSIFTSLSNT--KALIVFDRADTLQRIKDSQEFPLFL---SSLFMETRNVRVLVTAKQ-ALGLSSLRGVGEHVIT--LGPLDLKSTVRLFVILCP 974          
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: A0A0K6SAK2_9ALVE (SAM domain-containing protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6SAK2_9ALVE)

HSP 1 Score: 90.1 bits (222), Expect = 1.010e-15
Identity = 64/174 (36.78%), Postives = 89/174 (51.15%), Query Frame = 2
Query:   47 KMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSKNFYPALIGAGETVQRSFDLASESVETA-----GSSAAAEFVLLPDGANHEVKIFDSLPVGNFVDLSPPLPPVVNKFVARPEYVGTVDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRRRF 553
            K V  ASC+SK L  A VNAG  HV+AV    ++ DK AR F+   Y +L+  G++V+ +F  A   V  +     G+  A +FVLLP+  NH   +F  LP G FVD S  L P +   +     VG       V   +  + R + I+G PG+GK+A A  V  +V  R  F
Sbjct:  228 KCVVLASCNSKSLATAFVNAGARHVIAVETDQRILDKAARKFAYALYHSLL-QGQSVEGAFRHALWLVRHSSDIPKGALEAEKFVLLPEKGNHRAVLFGDLPKGAFVDRSVRLGPAILPSINFDHVVGREAPMWEVCRALKTSQRLVVIVGAPGVGKSALACAVGRFVWKRHWF 400          
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: A0A7S4M907_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M907_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.570e-14
Identity = 59/194 (30.41%), Postives = 104/194 (53.61%), Query Frame = 2
Query:   47 KMVFCASCDSKLLGDALVNAGVEHVVAVS---VKGQLRDKVARDFSKNFYPALIGAGETVQRSFDLASESVE-TAGSSAAAEFVLLPDGANHEVKIFDSLPVGNFVDLSPPLPPVVNKFVARPEYVGTVDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRR----RFDKIFVVRC----RDLVD 592
            K VF ++C S+ +G+A + AGV HV+ V     +G LRD  A  F+++FYP LI  G T+Q ++D + ++   T  +  A +++LLP GA+H  ++FD+  V  + D   P    +     RP     V++   +  ++  + R ++++GE G+G ++    +C Y+  R+      D+IF+ R     RD  D
Sbjct:  192 KFVFVSACHSRSMGEAFIRAGVRHVLCVEREESEGALRDDAALAFARSFYPLLI-EGYTIQAAYDSSRKTTSATFPTEEANKWILLPQGADHNRRVFDADEV-EWADTPSPRKKQLIPLPPRPFVGRRVEMHSCLGEII--SHRLVTVIGEEGVGCSSFLSALCTYIDLRKSNSLNVDEIFIARTFGSNRDFCD 381          
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Match: A0A7S3PBK8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBK8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.050e-14
Identity = 88/314 (28.03%), Postives = 138/314 (43.95%), Query Frame = 2
Query:   47 KMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSKNFYPALIGAGETVQRSFDLASESVETA-----GSSAAAEFVLLPDGANHEVKIFDSLPVGNF--------------VDLSPPLPPVVNKFVARPE------YVGT-VDLQRAVEMVVDPNARFISIMGEPGLGKTARAEKVCEYVRDRR----RFDKIFVVRCRDLVDESSRYRRPTSGAGHLKHTEYFCRLIGSAIDMPAPGPTSPVAVNEFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRDCEARDSLIDLFDKLFRQSPHIWILQT 898
            + VF ++C S L G+   +AGV HVV    + +L+D  A  F++ FY AL   G TV+ SF+   ++V          S   +FVLLP   NH+V IFD+  +  +               DLS     + NK    P       ++G  VD+   + +V++   R +SI+GEPG+G+++ A  +C ++ +R     + D I  V+ R          R  S A  L        + G  ID P    T P    E L +    S  +   K L+  D  + L   +D +       L   LFR++ H+ +L T
Sbjct: 1821 RFVFVSACHSGLAGETFASAGVPHVVCCKQEFELKDTAALAFTRQFYLALA-VGHTVKESFEQGRKAVRATPNLRDADSETEKFVLLPRDGNHDVPIFDAKQMLQWPHAASYRKKKSKPKADLS-----IFNKMQEAPSTSPPQFFLGREVDMYLVLNLVLEK--RLVSIVGEPGVGRSSLACALCHFINERASTISQIDHILYVKARQS--------RKQSRARALVQKLMKKLVDGQKID-PEDAETGPDVDIESLFDIICQSLRD--SKCLIVFDRTELL---KDSDETREFPMLLSNLFRETRHVRVLLT 2112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12818.2076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH01_9PHAE2.540e-5838.14CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5KC67_9PHAE7.500e-4535.54SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNY4_ECTSI9.680e-4534.60SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
D7FNX8_ECTSI1.200e-3331.78SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
K8YZD6_NANGC3.660e-3329.37Sh2 domain containing protein (Fragment) n=1 Tax=N... [more]
W7U5S9_9STRA4.220e-3229.23Sh2 domain containing protein n=2 Tax=Monodopsidac... [more]
A0A7S0FB49_9STRA5.970e-1828.61Hypothetical protein n=1 Tax=Rhizosolenia setigera... [more]
A0A0K6SAK2_9ALVE1.010e-1536.78SAM domain-containing protein n=2 Tax=Chromera vel... [more]
A0A7S4M907_9STRA1.570e-1430.41Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3PBK8_9STRA8.050e-1428.03Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12818contigH-elongata_contig12818:4729..8237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue1.4e-47
Seed eggNOG ortholog2880.D7FNY6
EggNOG OGs28NM8@1,2QV6X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1149
Cds size1119
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12818.2076.1prot_H-elongata_contig12818.2076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12818 4729..8209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929761.234001-CDS-H-elongata_contig12818:4728..49201622929761.234001-CDS-H-elongata_contig12818:4728..4920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 4729..4920 -
1691679147.7259986-CDS-H-elongata_contig12818:4728..49201691679147.7259986-CDS-H-elongata_contig12818:4728..4920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 4729..4920 -
1622929761.2516-CDS-H-elongata_contig12818:5079..52621622929761.2516-CDS-H-elongata_contig12818:5079..5262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 5080..5262 -
1691679147.7374773-CDS-H-elongata_contig12818:5079..52621691679147.7374773-CDS-H-elongata_contig12818:5079..5262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 5080..5262 -
1622929761.2658122-CDS-H-elongata_contig12818:5552..56601622929761.2658122-CDS-H-elongata_contig12818:5552..5660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 5553..5660 -
1691679147.7469957-CDS-H-elongata_contig12818:5552..56601691679147.7469957-CDS-H-elongata_contig12818:5552..5660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 5553..5660 -
1622929761.283119-CDS-H-elongata_contig12818:6246..64801622929761.283119-CDS-H-elongata_contig12818:6246..6480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 6247..6480 -
1691679147.757086-CDS-H-elongata_contig12818:6246..64801691679147.757086-CDS-H-elongata_contig12818:6246..6480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 6247..6480 -
1622929761.299674-CDS-H-elongata_contig12818:6928..70591622929761.299674-CDS-H-elongata_contig12818:6928..7059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 6929..7059 -
1691679147.7685442-CDS-H-elongata_contig12818:6928..70591691679147.7685442-CDS-H-elongata_contig12818:6928..7059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 6929..7059 -
1622929761.3171833-CDS-H-elongata_contig12818:7483..76301622929761.3171833-CDS-H-elongata_contig12818:7483..7630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 7484..7630 -
1691679147.7772977-CDS-H-elongata_contig12818:7483..76301691679147.7772977-CDS-H-elongata_contig12818:7483..7630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 7484..7630 -
1622929761.33132-CDS-H-elongata_contig12818:8085..82091622929761.33132-CDS-H-elongata_contig12818:8085..8209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 8086..8209 -
1691679147.787252-CDS-H-elongata_contig12818:8085..82091691679147.787252-CDS-H-elongata_contig12818:8085..8209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12818 8086..8209 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929761.3489776-UTR-H-elongata_contig12818:8209..82371622929761.3489776-UTR-H-elongata_contig12818:8209..8237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12818 8210..8237 -
1691679147.7990842-UTR-H-elongata_contig12818:8209..82371691679147.7990842-UTR-H-elongata_contig12818:8209..8237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12818 8210..8237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12818.2076.1

>prot_H-elongata_contig12818.2076.1 ID=prot_H-elongata_contig12818.2076.1|Name=mRNA_H-elongata_contig12818.2076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=373bp
MRRVIPKMVFCASCDSKLLGDALVNAGVEHVVAVSVKGQLRDKVARDFSK
NFYPALIGAGETVQRSFDLASESVETAGSSAAAEFVLLPDGANHEVKIFD
SLPVGNFVDLSPPLPPVVNKFVARPEYVGTVDLQRAVEMVVDPNARFISI
MGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRDLVDESSRYRRPTSGA
GHLKHTEYFCRLIGSAIDMPAPGPTSPVAVNEFLVNSSVTSGDEVQPKVL
LFLDDADSLFYSRDCEARDSLIDLFDKLFRQSPHIWILQTVEQHPLDRTT
KRFHNTHDRTCQVKPLQKEDAAKLLLHLFPREGRGFKSEELGVPRGSSIA
DCPSMMVNHPVLELVKGHPGTLV
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mRNA from alignment at H-elongata_contig12818:4729..8237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12818.2076.1 ID=mRNA_H-elongata_contig12818.2076.1|Name=mRNA_H-elongata_contig12818.2076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3509bp|location=Sequence derived from alignment at H-elongata_contig12818:4729..8237- (Himanthalia elongata Himel1 dioecious)
GACAACCGCACTGACGAACGTATTGCAGATGCGGCGGGTCATCCCCAAGA TGGTCTTCTGTGCGTCTTGCGACTCGAAGCTGCTCGGTGATGCGCTAGTG AATGCCGGGGTGGAGCACGTGGTGGCGGTGAGCGTCAAAGGACAGTTACG CGGTGAGTACGAAGAAAGTCCAGAAACGTGGCTTCGTCGCTCAGACCGCT CCCGGACAGGAAGCCAGACTGTTTTTTTGCCACATGGGTCCCTTGCCAGC CACGACCTACGGGGAATAGAAGGGTGGAAATTGAAGACTCCGTCGCGTCA TCGTGCGCAGTCGATCGCGACTAGGGAGATCCGCATCCGAAAATATTAAG ACATGAAGAGATGCCGATGGCGGACCGCGTCACAAGATTTTGCTCATCGT ATGTGGGCGTTTTTCCTCCGCTGGGGGAAATATATTGCATGACCTCGGGT TCGGACCCCGACCCTGCCATGCAACCCCAGCTCAAGTTTGTGATACAGGT GGGCCTGTGTCTTGAATAACGTTTCTCTCTCTCACATGGAAAACACCTTG GTCGCTGCCTCTCACCACCTCGCTTTTGCCATTCCCCCCGATCATGTCCT GCTGCAGACAAAGTGGCGCGGGACTTCAGCAAGAACTTTTACCCTGCGCT CATCGGCGCGGGTGAGACGGTGCAAAGGTCTTTTGATCTTGCGTCCGAAA GCGTGGAAACCGCGGGAAGTAGCGCGGCCGCGGAATTCGTCCTCCTGCCT GATGGTGAGCCGCTGCGGACACCGCACACTTCACCGACAACGCTGGGGCC GGTGTAGGGATTAAGGCGGCGAATCGGCGCTGCCATCGGGGCTATCATCT CAAAGTATTGTCGCGCTTCGAGGAAGCTCGAGAAATAACAAGAAAGGAAA ACCAAACTAGTGAAGTAAGTTATTGTAGACGGGAAACACAGGGCAGCGGT AGGTACAACGATGCTGGCTCAAATTGAAAGATGAGAAGGTTGATTAGGGA AACTCTCCGCGCTAAATCTTGACTGAAACATCGCCGTCTGGTCTTCTCCG TTCTGACCCAAAGATGGAACTACTTCTATTGAATTTTACGCACTGTGGTC ATCCCTCTCCCGTTGTCGCTTCGACGCTCTTTGTCTTGTTATTCCCTAAC CCGATCATCGGTTGGGTTGGAGAAACAGGTGCCAACCACGAGGTGAAAAT CTTCGACAGCCTGCCGGTGGGAAATTTCGTGGACCTTAGCCCCCCCCTGC CGCCGGTCGTCAACAAGTTTGTCGCGAGACCAGAATACGTCGGAACGGTG GATCTCCAGGTGATGTGATTGAGGTTGGCCAAAAGGAAAAATAATGCAGC AAAACGGACGACGCCAATAGCAGCAGGGGTTTTCCCTCTCGCGCGCCGCG ATCTCCTCACCTCCTTGCAGTGTACCGCGATGCACCACGTAGAGAGGTGA AACGGGCGCATGGAGAGGTCACGTTGCCTGTCGAAGAATAAGTGTCGCGC GGCCCCCTCGTGACTGTTCGAGGCAACGCCAACTGCTCGGCCTGATGAGA CTCTGAGGGTTGCTGACTGGCACCTCGACGCCACGCCGCGACGACCCCCG AGTCTGTCGCGCGCCCTCTCCCCTTCCCCCTCCTACTCCACCGCCTCTTG CGCCGCGCTTTTTCTGTTGCTGACCCTCTCGGACGACTCCGTTGCACTTT ATTTCTCTCCTATTGTCTTTTTGCAAAACGAACGGGAACTGGTTATGCCA TGCGCAGCGCGCCGTGGAGATGGTGGTCGATCCCAACGCGAGATTCATCT CGATTATGGGTGAGCCAGGATTAGGCAAGACAGCAAGGGCGGAGAAGGTT TGCGAGTATGTTCGAGATAGGCGCCGCTTCGACAAAATATTTGTAGTGCG CTGCAGGGACCTTGTGGATGAGAGCTCGAGATACCGTCGTCCGACATCCG GAGCGGGACACTTGAAGCATACAGAATATTTTTGTCGTCTGGTGAGCATC AGCTATGTCGTTCGCCTTTTGCCTTGTTTCTTAGATCCACTCATCGTTAG GTTTGAGTGGGGAGAAACATTGAGGTGAAAAGCCTTCTCGTCACGGCGAT CGCCACAAATATTATGACAATCAAAGAGAAATGATTTCATGCTTCCCGTC TAGAGACTCTCATCGTGCGTGTGTACGCGCGCGCGTGTTTTTCGCGGCTC GGATTACAAAAAAAAAGAACGCGTAGACAGAAACGAGGTTCGCAAACGAG AAGAAGATATATATATCTCTTGTGTCAAACCGTCTCATTCTGATATTTTT CCTGGCTATTCCCGATTCATTTAGAGTCGGGGTCGGAGAGAAAGAGAGAA TCTTCGCGGTTTCGCTTCATCTTGTGCTCTGTGAGCTACTGGCCCATCCA TCCGGTGAATCATTTTCTCCCCCCCCCCCCCCCCCCCCCCACTCACAAAT CCCACACCCGGCCCGCAGATGGNNNNNNNNNNGTGGCTTCTGGTGCACGC GCCCACCACCCCGGCTAATTCTTTCCCCCCCCCCCCCCCCCCCCCATAAC CGTTAAACTCTACCCCGCGCATCGCAGATCGGGTCGGCGATCGACATGCC CGCACCCGGGCCCACAAGTCCTGTCGCGGTGAATGAGTTTCTGGTGAATA GCTCGGTCACATCGGGAGACGAGGTTCAGCCAAAGGTGAGAGAAAAGTGA CTGATCGGGGGGAAGAAGGGTATAAAGCATCACATCGACCGCGAACCCCG TGGCATTTACCTCTCAGGCCTGACCGCCGTGGTTCATATTTATACCCCCC CTGTGATCGCCGATCGGGAGGAGGGGGAGTGGTCGGGACACCGTTCCGAT CAAGTTACGGTTCTTTGTCGTCCTTCCCTCGCTTTCTGACGACGCAGTTC GGCATTGTTGTTGTTTTTAACATGAAGAACAAGTAGGACGTTTCGGCACC CCTCTCTGTCGTTTCCCGTTCGCAGGTGCTCCTCTTCTTAGACGACGCGG ATTCTTTGTTTTACAGCAGGGACTGCGAAGCGCGCGACAGCCTGATCGAC CTTTTTGACAAACTATTCCGCCAGAGTCCGCACATATGGATCCTCCAGAC AGTCGAGCAACACCCACTGGACAGGACAACCAAGCGCTTCCACAATACCC ACGATAGGGTAAGGACATGCCCGCCCGCACCTCGTTTGTTTTCACTCCGT GTGCGACTGTTCAAAACCAGGCGCACAGCCCCCCCTCTCCTTGTCACCCG GGATCTCGATTACAATGCCTTGTCGTTTCTTCCTTTGCCCAACTTGCTAC TCGTACACGCCTGTAAGACCTGCCAAGTAAAGCCTTTGCAAAAAGAAGAC GCCGCGAAGCTGCTACTTCACCTCTTCCCCCGGGAAGGACGAGGATTCAA GTCCGAAGAGTTAGGCGTACCGAGGGGCTCGTCGATCGCCGATTGTCCCA GCATGATGGTGAACCACCCCGTGCTAGAGTTGGTTAAAGGACACCCGGGC ACGCTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig12818:4729..8237-

>mRNA_H-elongata_contig12818.2076.1 ID=mRNA_H-elongata_contig12818.2076.1|Name=mRNA_H-elongata_contig12818.2076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2238bp|location=Sequence derived from alignment at H-elongata_contig12818:4729..8237- (Himanthalia elongata Himel1 dioecious)
ATGCGGCGGGTCATCCCCAAGATGGTCTTCTGTGCGTCTTGCGACTCGAA
GCTGCTCGGTGATGCGCTAGTGAATGCCGGGGTGGAGCACGTGGTGGCGG
TGAGCGTCAAAGGACAGTTACGCGATGCGGCGGGTCATCCCCAAGATGGT
CTTCTGTGCGTCTTGCGACTCGAAGCTGCTCGGTGATGCGCTAGTGAATG
CCGGGGTGGAGCACGTGGTGGCGGTGAGCGTCAAAGGACAGTTACGCGAC
AAAGTGGCGCGGGACTTCAGCAAGAACTTTTACCCTGCGCTCATCGGCGC
GGGTGAGACGGTGCAAAGGTCTTTTGATCTTGCGTCCGAAAGCGTGGAAA
CCGCGGGAAGTAGCGCGGCCGCGGAATTCGTCCTCCTGCCTGATGACAAA
GTGGCGCGGGACTTCAGCAAGAACTTTTACCCTGCGCTCATCGGCGCGGG
TGAGACGGTGCAAAGGTCTTTTGATCTTGCGTCCGAAAGCGTGGAAACCG
CGGGAAGTAGCGCGGCCGCGGAATTCGTCCTCCTGCCTGATGGTGCCAAC
CACGAGGTGAAAATCTTCGACAGCCTGCCGGTGGGAAATTTCGTGGACCT
TAGCCCCCCCCTGCCGCCGGTCGTCAACAAGTTTGTCGCGAGACCAGAAT
ACGTCGGAACGGTGGATCTCCAGGTGCCAACCACGAGGTGAAAATCTTCG
ACAGCCTGCCGGTGGGAAATTTCGTGGACCTTAGCCCCCCCCTGCCGCCG
GTCGTCAACAAGTTTGTCGCGAGACCAGAATACGTCGGAACGGTGGATCT
CCAGCGCGCCGTGGAGATGGTGGTCGATCCCAACGCGAGATTCATCTCGA
TTATGGGTGAGCCAGGATTAGGCAAGACAGCAAGGGCGGAGAAGGTTTGC
GAGTATGTTCGAGATAGGCGCCGCTTCGACAAAATATTTGTAGTGCGCTG
CAGGGACCTTGTGGATGAGAGCTCGAGATACCGTCGTCCGACATCCGGAG
CGGGACACTTGAAGCATACAGAATATTTTTGTCGTCTGCGCGCCGTGGAG
ATGGTGGTCGATCCCAACGCGAGATTCATCTCGATTATGGGTGAGCCAGG
ATTAGGCAAGACAGCAAGGGCGGAGAAGGTTTGCGAGTATGTTCGAGATA
GGCGCCGCTTCGACAAAATATTTGTAGTGCGCTGCAGGGACCTTGTGGAT
GAGAGCTCGAGATACCGTCGTCCGACATCCGGAGCGGGACACTTGAAGCA
TACAGAATATTTTTGTCGTCTGATCGGGTCGGCGATCGACATGCCCGCAC
CCGGGCCCACAAGTCCTGTCGCGGTGAATGAGTTTCTGGTGAATAGCTCG
GTCACATCGGGAGACGAGGTTCAGCCAAAGATCGGGTCGGCGATCGACAT
GCCCGCACCCGGGCCCACAAGTCCTGTCGCGGTGAATGAGTTTCTGGTGA
ATAGCTCGGTCACATCGGGAGACGAGGTTCAGCCAAAGGTGCTCCTCTTC
TTAGACGACGCGGATTCTTTGTTTTACAGCAGGGACTGCGAAGCGCGCGA
CAGCCTGATCGACCTTTTTGACAAACTATTCCGCCAGAGTCCGCACATAT
GGATCCTCCAGACAGTCGAGCAACACCCACTGGACAGGACAACCAAGCGC
TTCCACAATACCCACGATAGGGTGCTCCTCTTCTTAGACGACGCGGATTC
TTTGTTTTACAGCAGGGACTGCGAAGCGCGCGACAGCCTGATCGACCTTT
TTGACAAACTATTCCGCCAGAGTCCGCACATATGGATCCTCCAGACAGTC
GAGCAACACCCACTGGACAGGACAACCAAGCGCTTCCACAATACCCACGA
TAGGACCTGCCAAGTAAAGCCTTTGCAAAAAGAAGACGCCGCGAAGCTGC
TACTTCACCTCTTCCCCCGGGAAGGACGAGGATTCAAGTCCGAAGAGTTA
GGCGTACCGAGGGGCTCGTCGATCGCCGATTGTCCCAGCATGATGGTGAA
CCACCCCGTGCTAGAGTTGGTTAAAGGACACCCGGGCACGCTGGTGACCT
GCCAAGTAAAGCCTTTGCAAAAAGAAGACGCCGCGAAGCTGCTACTTCAC
CTCTTCCCCCGGGAAGGACGAGGATTCAAGTCCGAAGAGTTAGGCGTACC
GAGGGGCTCGTCGATCGCCGATTGTCCCAGCATGATGGTGAACCACCCCG
TGCTAGAGTTGGTTAAAGGACACCCGGGCACGCTGGTG
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