mRNA_H-elongata_contig12813.2073.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12813.2073.1
Unique NamemRNA_H-elongata_contig12813.2073.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12813.2073.1 vs. uniprot
Match: D7FXA4_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA4_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 5.720e-5
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   22 RKSCNRCSSKKERCDGHEPCQRCLRSGLECLYATCRTLGRPRNNASTTSNKRPPLGPCKPSDG 210
            RK+C+RC+SKK RCDG E C +C R G  C ++ CR  G PR++     +K   +GP  P DG
Sbjct:   79 RKACDRCTSKKVRCDGKEGCFQCSRVGATCHFSICRRSG-PRDS---NGHKTGTIGPIIPRDG 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12813.2073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXA4_ECTSI5.720e-546.03Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12813contigH-elongata_contig12813:573..2741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-17_003460.1
Hectar predicted targeting categoryother localisation
Exons2
Model size654
Cds size654
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929760.9066346-CDS-H-elongata_contig12813:572..9401622929760.9066346-CDS-H-elongata_contig12813:572..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12813 573..940 +
1691679147.578948-CDS-H-elongata_contig12813:572..9401691679147.578948-CDS-H-elongata_contig12813:572..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12813 573..940 +
1622929760.9218798-CDS-H-elongata_contig12813:2455..27411622929760.9218798-CDS-H-elongata_contig12813:2455..2741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12813 2456..2741 +
1691679147.5885117-CDS-H-elongata_contig12813:2455..27411691679147.5885117-CDS-H-elongata_contig12813:2455..2741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12813 2456..2741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12813.2073.1prot_H-elongata_contig12813.2073.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12813 573..2741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12813.2073.1

>prot_H-elongata_contig12813.2073.1 ID=prot_H-elongata_contig12813.2073.1|Name=mRNA_H-elongata_contig12813.2073.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
QARSGGRRKSCNRCSSKKERCDGHEPCQRCLRSGLECLYATCRTLGRPRN
NASTTSNKRPPLGPCKPSDGSGANLARKVTDAVAAAPDAGSLSGTSAGAG
ICTIASVTIAPAAHTEAAAGVASNEAAAASEDSKTLTIARIESRANVGDR
CPPGLEAARERGRRRIAEPLFMICDILTVLSKVPWSTKESAHRTRKQLRE
MRSLVAAEKTLLEEHRSA
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mRNA from alignment at H-elongata_contig12813:573..2741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12813.2073.1 ID=mRNA_H-elongata_contig12813.2073.1|Name=mRNA_H-elongata_contig12813.2073.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2169bp|location=Sequence derived from alignment at H-elongata_contig12813:573..2741+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCGATCCGGCGGGAGGCGGAAGAGCTGCAACCGGTGCTCGAGCAA
GAAGGAGCGGTGCGACGGTCACGAGCCGTGCCAGCGATGCTTGCGCTCGG
GCCTTGAGTGCCTCTATGCCACCTGCCGAACGCTCGGCCGACCGCGCAAC
AACGCGTCGACGACCTCGAACAAGCGTCCTCCTCTTGGGCCTTGCAAACC
TTCCGACGGGTCGGGGGCAAATCTGGCACGGAAAGTTACCGATGCGGTTG
CCGCCGCCCCCGATGCCGGATCTCTTTCGGGCACGAGCGCTGGCGCCGGA
ATCTGTACAATCGCCTCCGTCACTATCGCTCCGGCTGCCCACACAGAAGC
CGCCGCGGGCGTCGCGAGGTCACGCTTAGTGAGGGGCGCGAAGAGTATTC
GGCCTACCGTTTCCGCGACTGCGAAAGCGACTACGAAAGCGACGGCGAAA
TCGGGGGTAACAACGTCTTCGTCGTCTCTCAAACGTTTGACCCTCTCGGC
CTCCCCTGGTGAGTCGATTAAGGAGCCGATGCGCACCAAGGAAGCGGTGC
ATCAACCGCCGTCGTTTTCGTTTTACTAGTAGTTTGACTTTCGATTGTAA
GCGCGAAAATGGGACGGGGTAGTTTATCGTTACTCGTTTTTTGACGCCAA
GTTCGGGCCCGTCCTGTCGTGCATGGTCTGGTTAGTCCGTCGGGGCTTCA
TAAGCACACCTTGAGTGATCGATACTAGCGCCCCCTTGACGGTGGCATCG
AGGTTACGCGTGATTGTCGCGACTTGGAAACGCTCCCTAACCGAACAGCG
TGGGAGGTCCTCGCGCAAATACCGGTGTGTCCATTGCGGGCGAATCACAA
GGAGCAGCGAGATAAGTTTTGCATCTTGACGCGTTTCTATAAAACCGGTT
AGCTTTCTTTTCCTATATGAGTTCCGCTTTCATGTTCTCTCTTGGTTTTG
TCCGTCACTCCCCCAACGTGGACGCATCGCAACGGCAGCAACCGGGCTGA
AGGGACTGGTGGAGAATGTCTATCTGACCTGGTTTGTCGAAGACTTTGCA
TGCTTTTACCGGGTGCTGGATGACGTCACCATCCGCCTTGGGCTCATCAA
CCTGATGACCGACAAGGTTGACGTCATGCGGCTGGCCGAGGCCGGCCGCT
CGCAACCTCCGCCGGCGAAGCGAAGGGCTGGGGCCGGCGCGCCGGGACGG
CGGAGATTGGCACCGGCACCATCTCTTGCGGCAACAGCGGCGGTGGTGAC
TCGCTCTTCCCTGACAACACTCGGCGGGAAGGTTACCCCCAAGATCGAAT
CGCCGGCCGAAGAGTTGTATGCCATCAACAGCTCGATCTTTTCGGCCATG
GCGCTCGGAGCGCTGCTGGCCGGCCAGGTGCCGTCACGCGTGCAGCAGTA
CGTGGAGGTAGCAGAGGCTTCGCTGAGGCTCTGCGGCTTCGAGACAGCGC
CGGCGCCCAACGAGCACGTGGCCGCCGCCCACCTCCTCTTGGCCTTCGTA
TCGAGCGTCGCCGGGCAGGAGGAGTACCTCCTCCACATCCGACTGACGCG
CGAGTGCTACGACGCGTGCGTGCGCCGTGGTCTCTACACGCCGCCCCCCA
TCTGCGAGATTCTGCTCTATCGCGCGATCATCGACGCGCTCGGCAAACCC
CTGGACGTGAGCAGGGTCCCGGCCCCCCGGGATTCCGACGTTCCCAATGT
GATGGACGGTGCCTCCGCAAGCTGCGCGGCAAGCAGCAGAAATAGTTTCT
CCGCTTCCACGGTTGACGACCTACTGCTCAAAGGCTCCGAGACCGCTCGC
GAACGGAAGCACGGTGACGGGAGAGGTAAGGGTCAAAATGACAGAGCCCA
GTCGGATGCAGGGAGAAATAGGACAGCTGCGAGCAACGAAGCCGCGGCGG
CTTCTGAAGACTCAAAAACACTTACCATCGCCAGGATCGAATCGCGGGCC
AACGTCGGCGACCGGTGCCCCCCGGGTCTGGAGGCTGCGAGAGAGCGAGG
GCGACGCAGAATAGCGGAGCCTCTGTTCATGATTTGTGATATCCTGACGG
TGCTGAGCAAGGTCCCGTGGTCAACGAAGGAGAGCGCCCACCGAACGAGG
AAGCAGCTGAGAGAGATGCGATCGTTGGTTGCCGCTGAGAAGACGCTCTT
GGAGGAGCACCGCTCTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig12813:573..2741+

>mRNA_H-elongata_contig12813.2073.1 ID=mRNA_H-elongata_contig12813.2073.1|Name=mRNA_H-elongata_contig12813.2073.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig12813:573..2741+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCGATCCGGCGGGAGGCGGAAGAGCTGCAACCGGTGCTCGAGCAA
GAAGGAGCGGTGCGACGGTCACGAGCCGTGCCAGCGATGCTTGCGCTCGG
GCCTTGAGTGCCTCTATGCCACCTGCCGAACGCTCGGCCGACCGCGCAAC
AACGCGTCGACGACCTCGAACAAGCGTCCTCCTCTTGGGCCTTGCAAACC
TTCCGACGGGTCGGGGGCAAATCTGGCACGGAAAGTTACCGATGCGGTTG
CCGCCGCCCCCGATGCCGGATCTCTTTCGGGCACGAGCGCTGGCGCCGGA
ATCTGTACAATCGCCTCCGTCACTATCGCTCCGGCTGCCCACACAGAAGC
CGCCGCGGGCGTCGCGAGCAGGCCCGATCCGGCGGGAGGCGGAAGAGCTG
CAACCGGTGCTCGAGCAAGAAGGAGCGGTGCGACGGTCACGAGCCGTGCC
AGCGATGCTTGCGCTCGGGCCTTGAGTGCCTCTATGCCACCTGCCGAACG
CTCGGCCGACCGCGCAACAACGCGTCGACGACCTCGAACAAGCGTCCTCC
TCTTGGGCCTTGCAAACCTTCCGACGGGTCGGGGGCAAATCTGGCACGGA
AAGTTACCGATGCGGTTGCCGCCGCCCCCGATGCCGGATCTCTTTCGGGC
ACGAGCGCTGGCGCCGGAATCTGTACAATCGCCTCCGTCACTATCGCTCC
GGCTGCCCACACAGAAGCCGCCGCGGGCGTCGCGAGCAACGAAGCCGCGG
CGGCTTCTGAAGACTCAAAAACACTTACCATCGCCAGGATCGAATCGCGG
GCCAACGTCGGCGACCGGTGCCCCCCGGGTCTGGAGGCTGCGAGAGAGCG
AGGGCGACGCAGAATAGCGGAGCCTCTGTTCATGATTTGTGATATCCTGA
CGGTGCTGAGCAAGGTCCCGTGGTCAACGAAGGAGAGCGCCCACCGAACG
AGGAAGCAGCTGAGAGAGATGCGATCGTTGGTTGCCGCTGAGAAGACGCT
CTTGGAGGAGCACCGCTCTGCCCAACGAAGCCGCGGCGGCTTCTGAAGAC
TCAAAAACACTTACCATCGCCAGGATCGAATCGCGGGCCAACGTCGGCGA
CCGGTGCCCCCCGGGTCTGGAGGCTGCGAGAGAGCGAGGGCGACGCAGAA
TAGCGGAGCCTCTGTTCATGATTTGTGATATCCTGACGGTGCTGAGCAAG
GTCCCGTGGTCAACGAAGGAGAGCGCCCACCGAACGAGGAAGCAGCTGAG
AGAGATGCGATCGTTGGTTGCCGCTGAGAAGACGCTCTTGGAGGAGCACC
GCTCTGCC
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