mRNA_H-elongata_contig128117.2072.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A6H5KJT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT5_9PHAE) HSP 1 Score: 216 bits (549), Expect = 7.490e-68 Identity = 102/132 (77.27%), Postives = 117/132 (88.64%), Query Frame = 1
Query: 1 RLKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSVGSQVDRRILTVR 396
R+KQGDL D DYFDFISFAQYA++A AMRNGRD FEEKVGAEG+KRTVQR D KDN RLPEEHARRVGD+ILAYCTE FGSTKLAPV+ QG +V+ L+EGCDR+MNLLRLNFY LDY+V + +DR++LTVR
Sbjct: 119 RIKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEKVGAEGEKRTVQRSADFKDNARLPEEHARRVGDRILAYCTEAFGSTKLAPVVTQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVLTVR 250
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: D8LI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI96_ECTSI) HSP 1 Score: 143 bits (360), Expect = 3.180e-40 Identity = 74/132 (56.06%), Postives = 87/132 (65.91%), Query Frame = 1
Query: 1 RLKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSVGSQVDRRILTVR 396
R+KQGDL D DYFDFISFAQYA++A AMRNGRD FEEK AYCTE FGSTKLAPV+AQG +V+ L+EGCDR+MNLLRLNFY LDY+V + +DR++LTVR
Sbjct: 79 RIKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEK-----------------------------------AYCTEAFGSTKLAPVVAQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVLTVR 175
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A836CM91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM91_9STRA) HSP 1 Score: 122 bits (307), Expect = 2.720e-31 Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = 1
Query: 10 QGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLA-PVIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSVGSQVDR---RILTV 393
QGDL D +YFDFISFAQYATIA MR+ + +F EKVGA+G+ +TVQR P+L D+ LP EHARRVGD+I Y ETF S A P ++ +S + G +RVM+ RLNF+ +D V + + +LTV
Sbjct: 144 QGDLTDPNYFDFISFAQYATIAAGMRSAQLLFTEKVGADGETQTVQRAPELADDALLPGEHARRVGDRIFTYIMETFASVPEALPQVSVKPPLSIIARGVERVMDKFRLNFFCVDAKVAASTGKDGSAVLTV 275
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A7S2V3L1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3L1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.070e-20 Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 1
Query: 10 QGDLMDADYFDFISFAQYATIAMAMRNGR-DIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYC-TETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSV 360
QGDL D YFDFISFAQYAT++ M+N +F EK GAEG+ +QR + DN LP HA+ VGD++L Y TE + KLAP + + SV L G + + L++LN +MLD+ V
Sbjct: 136 QGDLADPVYFDFISFAQYATLSRFMKNPPGQVFVEKRGAEGEDFVIQRPQEYADNKVLPIVHAQLVGDRMLEYLSTEKY--EKLAPKVPEKPSVETLLSGIVQAVGLMKLNSFMLDFQV 252
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A6U4J7M3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4J7M3_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 5.910e-19 Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 4 LKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLR 330
+ QGDL + DYFD+ISF QYA I +MR+GR F EK+GAEG++RTV+R L+DN LP EH RRVG +L++ E F P++ +G++ + + C V LR
Sbjct: 95 MTQGDLANPDYFDYISFCQYAVIGDSMRSGRLEFIEKIGAEGEQRTVRRAEGLRDNNLLPREHERRVGALLLSHLIERFPGR--FPLL-EGINARSSADLCGGVEQALR 200
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: R1CRK3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CRK3_EMIHU) HSP 1 Score: 89.4 bits (220), Expect = 1.630e-18 Identity = 53/116 (45.69%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 4 LKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDL-KDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYML 348
+KQGD+ D +YFDF+S+ QYATIA MR+GR +FEE + A G V RDP L +DN RLP + RVGDKIL E + LAP + S + L EG + + N Y+L
Sbjct: 174 VKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYNNYLL 287
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: R1DSH8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DSH8_EMIHU) HSP 1 Score: 89.4 bits (220), Expect = 2.450e-18 Identity = 53/116 (45.69%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 4 LKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDL-KDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYML 348
+KQGD+ D +YFDF+S+ QYATIA MR+GR +FEE + A G V RDP L +DN RLP + RVGDKIL E + LAP + S + L EG + + N Y+L
Sbjct: 229 VKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYNNYLL 342
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A8J5X5N7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X5N7_DIALT) HSP 1 Score: 87.0 bits (214), Expect = 5.310e-18 Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 7 KQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDL-KDNGRLPEEHARRVGDKILAYCTETF 240
KQGDL D YFDFISFAQY+T+A MRNGR + E VGAEG++ +R D+ +DN LP EH RRVGD I ++ +E +
Sbjct: 96 KQGDLQDPSYFDFISFAQYSTLAEEMRNGRLAYRELVGAEGEQVVRERPADVPRDNAALPAEHRRRVGDVIFSWASERY 174
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A0G4F5D5_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5D5_VITBC) HSP 1 Score: 86.3 bits (212), Expect = 1.790e-17 Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 4 LKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGS 246
+ QGDL DA+YFDFISFAQY T+ M +G+ +F EK GA G+++ V+R L DN LP EH+RRVGD++L + + F +
Sbjct: 125 ITQGDLADANYFDFISFAQYLTLYTEMCSGQQLFVEKTGATGEEQLVRRPAFLADNSLLPSEHSRRVGDRLLDFLIDRFNT 205
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A7S2MPG0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MPG0_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.310e-16 Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 1
Query: 10 QGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLAP--VIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSV----GSQVDRR 381
QG+L D YFDFIS+AQYATI+ M G +F E+VG +G+++ V+RD + N LP H++ VGD IL + E + P IA G S L ++++ L LN ++ D++V G Q R+
Sbjct: 182 QGELADPRYFDFISYAQYATISSCMNRGLFVFTEQVGVDGEEQVVRRDTTIT-NALLPAMHSKAVGDTILNWLLERYNKEGEQPRLPIAMGQSTDALVANINQLLGLFFLNNFLSDWTVRLVGGGQQGRQ 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig128117.2072.1 >prot_H-elongata_contig128117.2072.1 ID=prot_H-elongata_contig128117.2072.1|Name=mRNA_H-elongata_contig128117.2072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp MDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNback to top mRNA from alignment at H-elongata_contig128117:912..1582+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig128117.2072.1 ID=mRNA_H-elongata_contig128117.2072.1|Name=mRNA_H-elongata_contig128117.2072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=671bp|location=Sequence derived from alignment at H-elongata_contig128117:912..1582+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig128117:912..1582+ >mRNA_H-elongata_contig128117.2072.1 ID=mRNA_H-elongata_contig128117.2072.1|Name=mRNA_H-elongata_contig128117.2072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig128117:912..1582+ (Himanthalia elongata Himel1 dioecious)back to top |