mRNA_H-elongata_contig102372.207.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102372.207.1
Unique NamemRNA_H-elongata_contig102372.207.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match: D7G5T1_ECTSI (Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 6.490e-15
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
            NQHQ+SLWNGA ASGR P+A+P N K CVDCGSCLHGC
Sbjct:  544 NQHQSSLWNGAAASGRVPRAVPTNTKDCVDCGSCLHGC 581
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BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match: A0A6H5JQQ5_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.890e-15
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
            NQHQ+SLWNGA ASGR P+A+P N K CVDCGSCLHGC
Sbjct:  636 NQHQSSLWNGAAASGRVPRAVPTNTKECVDCGSCLHGC 673
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BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match: A0A482V3E7_9ARCH (GMC_OxRdtase_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V3E7_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 3.030e-10
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
            N++   LW GAV SG TP+ IPRN KGCVDCG C  GC
Sbjct:   14 NENNRFLWQGAVKSGYTPEKIPRNVKGCVDCGHCCFGC 51
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BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match: A0A7S1UJN9_9STRA (Long-chain-alcohol oxidase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJN9_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.110e-5
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1 
Query:   19 LWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
            L  GA A G   +A+PRN KGCVDCGSC HGC
Sbjct:  443 LVEGAHALGMPCRAVPRNVKGCVDCGSCSHGC 474
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BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match: A0A7R9YDU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDU7_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 7.290e-5
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 1 
Query:    1 NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
            N++   L  GA + G   +A+PRN KGCVDCGSC  GC
Sbjct:  346 NKNNDFLVEGAYSLGMKCRAVPRNVKGCVDCGSCNFGC 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5T1_ECTSI6.490e-1578.95Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JQQ5_9PHAE8.890e-1578.954Fe-4S ferredoxin-type domain-containing protein n... [more]
A0A482V3E7_9ARCH3.030e-1063.16GMC_OxRdtase_N domain-containing protein n=1 Tax=a... [more]
A0A7S1UJN9_9STRA1.110e-565.63Long-chain-alcohol oxidase n=1 Tax=Phaeomonas parv... [more]
A0A7R9YDU7_9STRA7.290e-552.63Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102372contigH-elongata_contig102372:282..395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6e-12
Seed eggNOG ortholog2880.D7G5T1
KEGG koko:K17756
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0044464,GO:0055114
EggNOG free text desc.long-chain-alcohol oxidase activity
EggNOG OGs2QSD8@2759,COG2303@1
EC1.1.3.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.705739-CDS-H-elongata_contig102372:281..3951622929561.705739-CDS-H-elongata_contig102372:281..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102372 282..395 -
1691679071.0720568-CDS-H-elongata_contig102372:281..3951691679071.0720568-CDS-H-elongata_contig102372:281..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102372 282..395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102372.207.1prot_H-elongata_contig102372.207.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102372 282..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102372.207.1

>prot_H-elongata_contig102372.207.1 ID=prot_H-elongata_contig102372.207.1|Name=mRNA_H-elongata_contig102372.207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC
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mRNA from alignment at H-elongata_contig102372:282..395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102372.207.1 ID=mRNA_H-elongata_contig102372.207.1|Name=mRNA_H-elongata_contig102372.207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig102372:282..395- (Himanthalia elongata Himel1 dioecious)
AACCAGCACCAAACCAGCTTGTGGAACGGTGCCGTGGCGTCCGGTCGGAC
CCCGAAGGCGATTCCGAGGAACGCCAAGGGTTGCGTAGACTGCGGCAGCT
GTCTGCACGGCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig102372:282..395-

>mRNA_H-elongata_contig102372.207.1 ID=mRNA_H-elongata_contig102372.207.1|Name=mRNA_H-elongata_contig102372.207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig102372:282..395- (Himanthalia elongata Himel1 dioecious)
AACCAGCACCAAACCAGCTTGTGGAACGGTGCCGTGGCGTCCGGTCGGAC
CCCGAAGGCGATTCCGAGGAACGCCAAGGGTTGCGTAGACTGCGGCAGCT
GTCTGCACGGCTGCAACCAGCACCAAACCAGCTTGTGGAACGGTGCCGTG
GCGTCCGGTCGGACCCCGAAGGCGATTCCGAGGAACGCCAAGGGTTGCGT
AGACTGCGGCAGCTGTCTGCACGGCTGC
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