prot_H-elongata_contig128057.2069.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig128057.2069.1
Unique Nameprot_H-elongata_contig128057.2069.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length36
Homology
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BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: A0A438JN72_VITVI (Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JN72_VITVI)

HSP 1 Score: 49.3 bits (116), Expect = 1.010e-5
Identity = 19/35 (54.29%), Postives = 30/35 (85.71%), Query Frame = 0 
Query:    1 MDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD 35
            ++VF+F+L+DE+LK GD+ ERHFG+F ++GA+  D
Sbjct:  122 VEVFVFDLFDENLKSGDEYERHFGIFGLDGAKAYD 156
[Close]
BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: A0A438EHV3_VITVI (Glucan endo-1,3-beta-D-glucosidase n=5 Tax=Vitis TaxID=3603 RepID=A0A438EHV3_VITVI)

HSP 1 Score: 49.3 bits (116), Expect = 1.020e-5
Identity = 19/35 (54.29%), Postives = 30/35 (85.71%), Query Frame = 0 
Query:    1 MDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD 35
            ++VF+F+L+DE+LK GD+ ERHFG+F ++GA+  D
Sbjct:  329 VEVFVFDLFDENLKSGDEYERHFGIFGLDGAKAYD 363
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A438JN72_VITVI1.010e-554.29Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Vitis v... [more]
A0A438EHV3_VITVI1.020e-554.29Glucan endo-1,3-beta-D-glucosidase n=5 Tax=Vitis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.20.20.80coord: 1..35
e-value: 7.7E-8
score: 33.5
IPR017853Glycoside hydrolase superfamilySUPERFAMILY51445(Trans)glycosidasescoord: 1..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128057contigH-elongata_contig128057:347..454 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128057.2069.1mRNA_H-elongata_contig128057.2069.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig128057 320..454 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig128057.2069.1 ID=prot_H-elongata_contig128057.2069.1|Name=mRNA_H-elongata_contig128057.2069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017853Glycoside_hydrolase_SF