prot_H-elongata_contig128044.2067.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig128044.2067.1
Unique Nameprot_H-elongata_contig128044.2067.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length176
Homology
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.150e-35
Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 0
Query:    1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            L   GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D  AGTL   Q  YI +M ERF V  TS IP+  G     K        E EE  + P RE +G++MW +T +RP++SFA   +A+    P   HW A QK L YL
Sbjct:  190 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 361          
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.280e-35
Identity = 77/179 (43.02%), Postives = 106/179 (59.22%), Query Frame = 0
Query:    1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            L   GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D  AGTL   Q  YI +M ERF V  TS IP+  G         PQ + E  E  + P RE +G++MW +T +RP++SFA   +A+    P   HW A QK L YL
Sbjct:  126 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADL-----GPQREDE--EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 297          
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 8.640e-35
Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 0
Query:    1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            L   GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D  AGTL   Q  YI +M ERF V  TS IP+  G     K        E EE  + P RE +G++MW +T +RP++SFA   +A+    P   HW A QK L YL
Sbjct:  903 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 1074          
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 8.650e-35
Identity = 77/179 (43.02%), Postives = 106/179 (59.22%), Query Frame = 0
Query:    1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            L   GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D  AGTL   Q  YI +M ERF V  TS IP+  G     K        E EE  + P R+ +G++MW +T +RP++SFAA  +A+    P   HW A QK L YL
Sbjct: 1012 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYL 1183          
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 8.840e-35
Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 0
Query:    1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            L   GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D  AGTL   Q  YI +M ERF V  TS IP+  G     K        E EE  + P RE +G++MW +T +RP++SFA   +A+    P   HW A QK L YL
Sbjct: 1282 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 1453          
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 8.870e-35
Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 0
Query:    1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            L   GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D  AGTL   Q  YI +M ERF V  TS IP+  G     K        E EE  + P RE +G++MW +T +RP++SFA   +A+    P   HW A QK L YL
Sbjct: 1302 LVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 1473          
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 8.900e-35
Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 0
Query:    1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            L   GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D  AGTL   Q  YI +M ERF V  TS IP+  G     K        E EE  + P RE +G++MW +T +RP++SFA   +A+    P   HW A QK L YL
Sbjct: 1445 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 1616          
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.190e-34
Identity = 75/179 (41.90%), Postives = 106/179 (59.22%), Query Frame = 0
Query:    1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            L   GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D +AGTL   Q  YI +M ERF V  TS IP+  G     K        E EE  + P RE +G++MW +T +RP++SFA   +A+    P   HW A QK L ++
Sbjct:  538 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFM 709          
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.770e-34
Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 0
Query:    1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            L   GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D +AGTL   Q  YI +M ERF V  TS IP+  G     K        E ++  + P RE VG++MW +T +RP++SFA   +A+    P   HW A QK L YL
Sbjct:  494 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 665          
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 4.080e-34
Identity = 75/175 (42.86%), Postives = 103/175 (58.86%), Query Frame = 0
Query:    5 GFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 176
            GF++ +ADPCVF +++  VVV++IV+YVDD+LVA + +  E+ L S    FP K+LGE  ++ GC I  D  AGTL   Q  YI +M ERF V  TS IP+  G     K        E EE  + P RE +G++MW +T +RP++SFA   + +    P   HW A QK L YL
Sbjct:  844 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYL 1011          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTL3_9PHAE1.150e-3543.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE1.280e-3543.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE8.640e-3543.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE8.650e-3543.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE8.840e-3543.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE8.870e-3543.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE8.900e-3543.02Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K164_9PHAE3.190e-3441.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE3.770e-3442.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE9_9PHAE4.080e-3442.86Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..97
e-value: 1.1E-10
score: 41.6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..176
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..33
NoneNo IPR availableTMHMMTMhelixcoord: 15..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128044contigH-elongata_contig128044:1319..1858 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128044.2067.1mRNA_H-elongata_contig128044.2067.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig128044 1319..1858 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig128044.2067.1 ID=prot_H-elongata_contig128044.2067.1|Name=mRNA_H-elongata_contig128044.2067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCS
CFPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSII
PSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFA
AHQLAKFNDNPGPTHWRAAQKALQYL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2