mRNA_H-elongata_contig12798.2064.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12798.2064.1
Unique NamemRNA_H-elongata_contig12798.2064.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: A0A6H5JMU8_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMU8_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.460e-39
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 SGVVGTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYGLRPPIDPRWSTGLSTLLQSCWHPDPNLRPSMLIVRQRL 291
            SG+ G+KRFM+PEVC+G+ Y EKVDVYSF ++LW+ICTLRKPFAGMS A H+++V+  GLRPP+DPRW   L  LLQ+CWH DP+ RPS+   R  L
Sbjct:  235 SGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQHLLQACWHEDPDRRPSISEARDVL 331
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BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: A0A6H5L2N4_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2N4_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.160e-38
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 SGVVGTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYGLRPPIDPRWSTGLSTLLQSCWHPDPNLRPSMLIVRQRL 291
            SG+ G+KRFMAPEVC G++Y EKVDVYSF ++LWQIC LRKPFAGMSEA H+ QVV  GLRPP+D RW   L  LLQ+CWH  P+ RP+M+  R  L
Sbjct:  194 SGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQARDTL 290
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BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: A0A6H5K4Q0_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4Q0_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.630e-28
Identity = 47/88 (53.41%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 SGVVGTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYGLRPPIDPRWSTGLSTLLQSCWHPDPNLRP 264
            +G  G++RFMAPEV  GM Y EK D+YS+G++LW++C L+KPFAGMS   H ++V  +G+RPP+D RW   L +LL+SCWH +   RP
Sbjct:  264 TGQTGSQRFMAPEVFDGMPYNEKADIYSYGIVLWELCALQKPFAGMSSHEHARKVFRHGVRPPLDKRWPDELKSLLRSCWHAEAEERP 351
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BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: B8CA90_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA90_THAPS)

HSP 1 Score: 98.2 bits (243), Expect = 5.260e-24
Identity = 48/96 (50.00%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   13 GTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQ-VVLYGLRPP--IDPRWSTGLSTLLQSCWHPDPNLRPSMLIVRQRL 291
            GT+R+MAPEV   + Y  +VDVYSFG+LLW+IC + KPF  +     F   VVL G RPP  IDP W+  L  L+  CW  DP  RPSM+ V+  L
Sbjct:   56 GTRRYMAPEVALKLGYGHEVDVYSFGMLLWEICVMEKPFDSIQSVEDFHDIVVLCGKRPPLNIDPLWTKSLKNLMVRCWSTDPLDRPSMMQVKSML 151
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BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: A0A835Z9R1_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.170e-24
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   13 GTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYGLRPPIDPRWSTGLSTLLQSCWHPDPNLRPSMLIVRQRL 291
            GT R+MAPEV RG  Y E+VDVYSFG+LLW++   ++ F G+     ++ V+  GLRP ++  WS  L+ L++SCW P+P+ RP +  V   L
Sbjct:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAAL 93
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BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: A0A6H5JUQ3_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUQ3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.190e-22
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 SGVVGTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYGLRPPIDPRWSTGLSTLLQSCWHPDPNLRPSMLIV 279
            +G  G+ R+MAPEV     Y EKVDVYSFG++LW++ TL+KPF GM       QV+    RPP+  +W    S L+QSCW  DP+ RPS   V
Sbjct:  456 TGETGSVRYMAPEVAESRPYNEKVDVYSFGIILWEMSTLKKPFDGMGHDRFLSQVIRGSHRPPVHKKWPKPWSELMQSCWAEDPSKRPSFAKV 548
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BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: A0A397T928_9GLOM (Kinase-like domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T928_9GLOM)

HSP 1 Score: 95.1 bits (235), Expect = 1.340e-22
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 SGVVGTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYGLRPPIDPRWSTGLSTLLQSCWHPDPNLRPSMLIVRQRLW 294
            + V G   +MAPEV R  +YT+  DVYSFG++LW++ + R PF+  S+  H    ++ G RP I        + L+Q CW+PDPNLRP+M  V +R+W
Sbjct:    3 NNVYGKIGYMAPEVLRQKSYTKAADVYSFGIILWELTSCRMPFSDESQDLHLIYEIIEGRRPEIVEGTPPAFAKLIQDCWNPDPNLRPTMEKVHKRIW 100
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BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: A0A7S3HAA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAA9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.660e-22
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:    1 SGVVGTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYGLRPPIDPRWSTGLSTLLQSCWHPDPNLRPSMLIV 279
            +G  G+ R+MAPEV     Y EKVDVYSFG++LWQ+     PF G+ +    Q+VV   +RP +D  W  G S LL +CW  DP  RPS  ++
Sbjct:   89 TGYTGSLRYMAPEVALREPYNEKVDVYSFGIMLWQMARDNLPFTGLGKTEFMQEVVRGNVRPKLDRSWPDGFSNLLTACWARDPQKRPSFSVI 181
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BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: A0A482S9W4_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9W4_9ARCH)

HSP 1 Score: 94.7 bits (234), Expect = 1.890e-22
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 SGVVGTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYGLRPPIDPRWSTGLSTLLQSCWHPDPNLRPSMLIVRQRL 291
            +G  G+ R+MAPEV     YTEKVDVYSFG+++WQ+   R PF G ++    +QVV+ G RP +D  W    + LL  CW  DP +RPS   ++  L
Sbjct:   43 TGYTGSLRYMAPEVALRQPYTEKVDVYSFGIMVWQMARDRVPFKGYAKDNFMKQVVVNGERPKLDSSWPPSFTDLLTRCWCKDPKVRPSFEAIKGEL 139
[Close]
BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Match: A0A7S2YTZ9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YTZ9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.180e-22
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 SGVVGTKRFMAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYGLRPPIDPRWSTGLSTLLQSCWHPDPNLRPSM 270
            SG  G+ R+MAPEV R   Y    DVYSFG+LLWQ+C+L  P+ GM+   H + VV    RPP++  WST L  L++  W PDP++RPSM
Sbjct:  276 SGNTGSLRYMAPEVARSEPYNLTADVYSFGLLLWQVCSLDLPYDGMNRQDHSELVVHGNERPPLNSSWSTPLRILMKRAWEPDPSVRPSM 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12798.2064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMU8_9PHAE2.460e-3962.89Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5L2N4_9PHAE1.160e-3864.95Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5K4Q0_9PHAE2.630e-2853.41Protein kinase domain-containing protein n=2 Tax=E... [more]
B8CA90_THAPS5.260e-2450.00Protein kinase domain-containing protein (Fragment... [more]
A0A835Z9R1_9STRA7.170e-2445.16Kinase-like domain-containing protein (Fragment) n... [more]
A0A6H5JUQ3_9PHAE1.190e-2248.39Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A397T928_9GLOM1.340e-2242.86Kinase-like domain-containing protein n=1 Tax=Glom... [more]
A0A7S3HAA9_9STRA1.660e-2245.16Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482S9W4_9ARCH1.890e-2244.33Protein kinase domain-containing protein n=1 Tax=a... [more]
A0A7S2YTZ9_9STRA2.180e-2250.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12798contigH-elongata_contig12798:4132..4425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.7e-28
Seed eggNOG ortholog2880.D7FPX1
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.5249915-CDS-H-elongata_contig12798:4131..43981622929759.5249915-CDS-H-elongata_contig12798:4131..4398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12798 4132..4398 -
1691679147.0157588-CDS-H-elongata_contig12798:4131..43981691679147.0157588-CDS-H-elongata_contig12798:4131..4398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12798 4132..4398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.5418944-UTR-H-elongata_contig12798:4398..44251622929759.5418944-UTR-H-elongata_contig12798:4398..4425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12798 4399..4425 -
1691679147.0377102-UTR-H-elongata_contig12798:4398..44251691679147.0377102-UTR-H-elongata_contig12798:4398..4425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12798 4399..4425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12798.2064.1prot_H-elongata_contig12798.2064.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12798 4132..4398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12798.2064.1

>prot_H-elongata_contig12798.2064.1 ID=prot_H-elongata_contig12798.2064.1|Name=mRNA_H-elongata_contig12798.2064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MAPEVCRGMAYTEKVDVYSFGVLLWQICTLRKPFAGMSEAAHFQQVVLYG
LRPPIDPRWSTGLSTLLQSCWHPDPNLRPSMLIVRQRLW
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mRNA from alignment at H-elongata_contig12798:4132..4425-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12798.2064.1 ID=mRNA_H-elongata_contig12798.2064.1|Name=mRNA_H-elongata_contig12798.2064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig12798:4132..4425- (Himanthalia elongata Himel1 dioecious)
TCGGGAGTGGTCGGAACCAAGCGGTTCATGGCACCGGAGGTGTGCAGAGG
CATGGCCTACACCGAGAAGGTAGACGTGTACTCCTTCGGCGTGTTGCTGT
GGCAGATCTGTACCCTACGCAAGCCTTTCGCCGGGATGAGCGAGGCAGCG
CACTTCCAGCAGGTGGTGCTGTACGGTCTCCGGCCTCCAATTGACCCTCG
CTGGTCCACGGGTCTCTCGACACTGCTACAGAGCTGCTGGCACCCAGACC
CCAATTTGCGCCCCTCCATGCTGATTGTGCGGCAGAGGTTGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig12798:4132..4425-

>mRNA_H-elongata_contig12798.2064.1 ID=mRNA_H-elongata_contig12798.2064.1|Name=mRNA_H-elongata_contig12798.2064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig12798:4132..4425- (Himanthalia elongata Himel1 dioecious)
ATGGCACCGGAGGTGTGCAGAGGCATGGCCTACACCGAGAAGGTAGACGT
GTACTCCTTCGGCGTGTTGCTGTGGCAGATCTGTACCCTACGCAAGCCTT
TCGCCGGGATGAGCGAGGCAGCGCACTTCCAGCAGGTGGTGCTGTACGGT
CTCCGGCCTCCAATTGACCCTCGCTGGTCCACGGGTCTCTCGACACTGCT
ACAGAGCTGCTGGCACCCAGACCCCAATTTGCGCCCCTCCATGCTGATTG
TGCGGCAGAGGTTGTGGATGGCACCGGAGGTGTGCAGAGGCATGGCCTAC
ACCGAGAAGGTAGACGTGTACTCCTTCGGCGTGTTGCTGTGGCAGATCTG
TACCCTACGCAAGCCTTTCGCCGGGATGAGCGAGGCAGCGCACTTCCAGC
AGGTGGTGCTGTACGGTCTCCGGCCTCCAATTGACCCTCGCTGGTCCACG
GGTCTCTCGACACTGCTACAGAGCTGCTGGCACCCAGACCCCAATTTGCG
CCCCTCCATGCTGATTGTGCGGCAGAGGTTGTGG
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