mRNA_H-elongata_contig127927.2059.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: G5AFV8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AFV8_PHYSP) HSP 1 Score: 88.6 bits (218), Expect = 4.700e-19 Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 67 QAMDLAAANGHLDVVKWLHENRSEGCTHTLALTFLIEDDETSLPIILQHSIPNHIPRTAAMDEAAKNGFIEVVKWLHEHRQEGCT 321
+AMD AA NGHL+VVKWLH NRSEG ++ E L ++L+H T AMD+AA NG +E VKWLH +R EGCT
Sbjct: 1 RAMDEAAGNGHLEVVKWLHTNRSEGLPESVVEVAASEGRLDMLQLLLEHDAGRRWRPTEAMDDAAANGQLEAVKWLHNNRSEGCT 85
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: D7FSA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA7_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 6.760e-17 Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1
Query: 1 DVAAQNGHLELFKSGQVKEFSTQAMDLAAANGHLDVVKWLHENRSEGCT 147
DVAAQ G L++ KSGQ KEFSTQAMDLAAANGH +VV+WLH++R EGCT
Sbjct: 6 DVAAQKGQLDVLKSGQAKEFSTQAMDLAAANGHQEVVQWLHDHRKEGCT 54
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: A0A1V9ZYM4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYM4_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 6.250e-14 Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 1
Query: 1 DVAAQNGHLELFK---SGQVKEFSTQAMDLAAANGHLDVVKWLHENRSEGCTHTLALTFLIEDDETSLPIILQHSIPNHIPRTAAMDEAAKNGFIEVVKWLHEHRQEGCT 321
++AA+N HL++ K + ST+ +D AA G L+VVK+LHENRSE + L + L + H + T AMD AA G +++VKWLH+HR EGC+
Sbjct: 19 NIAAENEHLDMIKFLHGAGSEACSTEVIDRAALYGCLEVVKFLHENRSEDAQQMPWMELL---EMVILTVKFLHDYRSEGYTTEAMDSAASYGHLDIVKWLHQHRTEGCS 125
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: T0RZC7_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RZC7_SAPDV) HSP 1 Score: 69.3 bits (168), Expect = 2.600e-11 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 73 MDLAAANGHLDVVKWLHENRSEGCTHTLALTFLIEDDETSLPIILQHSIPNHIPRTAAMDEAAKNGFIEVVKWLHEHRQEGCT 321
MD AA+NG LDVV+WLHE+R EGC+ AL I + + L+ P+ AMDEAA +G ++VV++LHE CT
Sbjct: 1 MDNAASNGFLDVVRWLHEHRHEGCS-AAALDGAINNGHAEIVAFLRQHYPHLDVTPDAMDEAAGSGRLDVVRYLHEECHAPCT 82
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: A0A5D6XSE5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSE5_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.940e-10 Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 7 AAQNGHLELFKSGQVKEFST----QAMDLAAANGHLDVVKWLHENRSEGCTHTLALTFLIEDDETSLPI---ILQH---SIPNHIPRTAAMDEAAKNGFIEVVKWLHEHRQEG 315
AA+NGHLE K + +T +A+D +A NGHL VV +LHE + ++ L+ + D L+H + N I TAA+D AA+NG++EVVK+LH HR+EG
Sbjct: 136 AARNGHLETVKLLAESDIATHDAPRAIDYSAENGHLGVVAYLHERFGQARSN-LSSVVNVSDARARGDANAGALRHPRGATANAICTTAALDGAARNGYLEVVKFLHTHRREG 247
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: A0A225UYR8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UYR8_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.740e-10 Identity = 45/126 (35.71%), Postives = 58/126 (46.03%), Query Frame = 1
Query: 1 DVAAQNGHLELFKS----------------------GQVKEFSTQAMDLAAANGHLDVVKWLHENRSEGCTHTLALTFLIEDDETSLPIILQHSIPNHIPRTAAMDEAAKNGFIEVVKWLHEHRQE 312
D A NGHLE+ K+ + +T AMD AA NGHL VV+WLH+NRSEGC ++ + S TAA+D A + G+IEVVKWL +R E
Sbjct: 426 DAADLNGHLEVVKAFALPTNSLQECDQKPKGDETKPKSIPRCTTNAMDYAAGNGHLLVVQWLHQNRSEGCXXXXXXXXA-----RLSAVVARKSFRGCT--TAAIDGAVETGYIEVVKWLRYNRTE 544
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: A0A662Y9J5_9STRA (Protein kinase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y9J5_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.880e-10 Identity = 42/117 (35.90%), Postives = 57/117 (48.72%), Query Frame = 1
Query: 1 DVAAQNGHLELFKSGQVKEFSTQA-------MDLAAANGHLDVVKWLHENRSEGCTHTLALTFLIEDDETSLPIILQHSIPNHIPRTAAMDEAAKNGFIEVVKWLHEHRQEGCTGGA 330
D+AA +G+LE K ++ T + M AAA GHLDVVKWLHE + + N + + MD AAK+GF++VV+WLHE+R E CT A
Sbjct: 205 DLAAGDGNLEFLKFATSRKLWTPSTRDASWMMSSAAAAGHLDVVKWLHEELGTNSVDDGYVNAXXXXXXXXXXXXXXKHLRNG-SKQSPMDVAAKSGFLDVVQWLHENRSEECTSAA 320
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: A0A485KE70_9STRA (Aste57867_3767 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KE70_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 5.220e-10 Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 1 DVAAQNGHLELFKSGQVK--EFSTQAMDLAAANGHLDVVKWLHENRSEGCTHTLALTFLIEDDETSLPIILQ-HSIPNHIPRTAAMDEAAKNGFIEVVKWLHEH 303
D AA NG+ ++ + V ST A+D A N HLDVV+WL ENR+EGCT AL + + L +L+ H+ H MD AA NG+I+++++LH+H
Sbjct: 386 DKAAANGYQDVVQYLHVHGGTCSTDAIDFATENDHLDVVQWLCENRTEGCT-IKALQVAADRGKRKLFDLLRGHNKGEH--DRIKMDTAAANGYIDILEYLHDH 486
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: A0A225V4U3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V4U3_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.290e-9 Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 1
Query: 4 VAAQNGHLELFKSGQVKEFSTQAMD---LAAANGHLDVVKWLHENRSEGCTHTLALTFLIEDDETSLPI-ILQ--HSIPN---HIPRTA-AMDEAAKNGFIEVVKWLHEHRQEGCT 321
+AA+ GH+++ K + +S D LA N HLD VKWL +N +L+ +IE+ + ILQ H IP+ ++PR A+D AA +G + VVKWLHE+R +GCT
Sbjct: 351 LAAEGGHIDVMKYLHEQGYSDNIKDAAVLAVRNDHLDTVKWLLDNH-----RSLSHDGMIEEAARHGRLNILQYFHRIPHEDGYLPRFRNAIDVAATDGHLSVVKWLHENRSDGCT 461
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Match: A0A1V9YXH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXH8_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.390e-9 Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 1
Query: 7 AAQNGHLELFKSGQVKEFSTQAMDLAAANGHLDVVKWLHENRSEGCTHTLALTFLIEDDETSLPIILQHSI---PNHIPRTAAMDEAAKNGFIEV 282
AA NGH+ + + Q ++QAMDLAA NGHLD V++LHENR+EGC+ + ED + + H+ P+ I + AA NG +E+
Sbjct: 482 AAANGHVAVLRLLQNVPTTSQAMDLAAKNGHLDAVRYLHENRAEGCSQLAFSHAMAEDCMEVVEYLFTHNCCRDPDPIDVPSMYLHAATNGRLEL 576 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127927.2059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig127927.2059.1 >prot_H-elongata_contig127927.2059.1 ID=prot_H-elongata_contig127927.2059.1|Name=mRNA_H-elongata_contig127927.2059.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp DVAAQNGHLELFKSGQVKEFSTQAMDLAAANGHLDVVKWLHENRSEGCTHback to top mRNA from alignment at H-elongata_contig127927:238..1512- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig127927.2059.1 ID=mRNA_H-elongata_contig127927.2059.1|Name=mRNA_H-elongata_contig127927.2059.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1275bp|location=Sequence derived from alignment at H-elongata_contig127927:238..1512- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig127927:238..1512- >mRNA_H-elongata_contig127927.2059.1 ID=mRNA_H-elongata_contig127927.2059.1|Name=mRNA_H-elongata_contig127927.2059.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig127927:238..1512- (Himanthalia elongata Himel1 dioecious)back to top |