mRNA_H-elongata_contig127863.2052.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127863.2052.1
Unique NamemRNA_H-elongata_contig127863.2052.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127863.2052.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.040e-12
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    4 QMVFISGDGGGAGSRLTQDVGNILSQLPVTVEALTGVDI 120
            +MVFI+G+GGGAGSRLTQDVGNIL+QLP TVEALTGVDI
Sbjct:  365 KMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDI 403
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BLAST of mRNA_H-elongata_contig127863.2052.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.020e-12
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    4 QMVFISGDGGGAGSRLTQDVGNILSQLPVTVEALTGVDI 120
            +MVFI+G+GGGAGSRLTQDVG+IL+QLP TVEALTGVDI
Sbjct:  387 KMVFIAGEGGGAGSRLTQDVGSILAQLPETVEALTGVDI 425
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BLAST of mRNA_H-elongata_contig127863.2052.1 vs. uniprot
Match: A0A6H5K3X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 6.680e-12
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    4 QMVFISGDGGGAGSRLTQDVGNILSQLPVTVEALTG 111
            +MVFI+GDGGGAGSRLTQDVGNIL+QLP TV+ALTG
Sbjct:  138 KMVFIAGDGGGAGSRLTQDVGNILAQLPETVQALTG 173
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BLAST of mRNA_H-elongata_contig127863.2052.1 vs. uniprot
Match: A0A535IAW1_9CHLR (Flotillin family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535IAW1_9CHLR)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-6
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 MVFISGDGGGAG---SRLTQDVGNILSQLPVTVEALTGVDI 120
            ++  +GDG G G   SRLTQD+ NI+SQ+P TVEALTGVD+
Sbjct:   52 VIISNGDGNGHGAGASRLTQDITNIISQVPATVEALTGVDV 92
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BLAST of mRNA_H-elongata_contig127863.2052.1 vs. uniprot
Match: A0A7C7QQR8_9CHLR (Flotillin family protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7QQR8_9CHLR)

HSP 1 Score: 49.3 bits (116), Expect = 2.430e-6
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    7 MVFISGDGGGAGSRLTQDVGNILSQLPVTVEALTGVDI 120
            ++   GD G   SR+TQDV NI++Q+P TVEALTGVD+
Sbjct:   48 IINAGGDSGAGASRITQDVANIIAQVPATVEALTGVDL 85
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BLAST of mRNA_H-elongata_contig127863.2052.1 vs. uniprot
Match: A0A1F8QSQ8_9CHLR (Flotillin n=1 Tax=Chloroflexi bacterium RBG_16_56_8 TaxID=1797650 RepID=A0A1F8QSQ8_9CHLR)

HSP 1 Score: 48.1 bits (113), Expect = 3.120e-5
Identity = 25/43 (58.14%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 KQMVFIS--GDGGGAG-SRLTQDVGNILSQLPVTVEALTGVDI 120
            +++V IS  GDG GAG S+++QD+ NI++Q+P TVEALTGVD+
Sbjct:  446 ERIVIISNGGDGSGAGASKVSQDIANIIAQVPATVEALTGVDL 488
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BLAST of mRNA_H-elongata_contig127863.2052.1 vs. uniprot
Match: A0A3M2AF75_9CHLR (Flotillin family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M2AF75_9CHLR)

HSP 1 Score: 48.1 bits (113), Expect = 3.130e-5
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 KQMVFISGDGGGAG-SRLTQDVGNILSQLPVTVEALTGVDI 120
            +++V +S  G GAG SR+TQD+ NI++Q+P TVEALTG+D+
Sbjct:  348 ERIVVVSNGGDGAGASRITQDITNIMAQVPATVEALTGMDL 388
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BLAST of mRNA_H-elongata_contig127863.2052.1 vs. uniprot
Match: UPI001AD29B91 (Inner membrane protein YqiK n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001AD29B91)

HSP 1 Score: 47.8 bits (112), Expect = 4.270e-5
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 KQMVFISG---DGGGAG-SRLTQDVGNILSQLPVTVEALTGVDI 120
            +++V IS    DG GAG S+++QDV NI+SQ+P TVEALTGVDI
Sbjct:  446 ERIVIISNGGADGSGAGASKVSQDVANIISQVPATVEALTGVDI 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127863.2052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G1I5_ECTSI1.040e-1287.18PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1I4_ECTSI5.020e-1284.62PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K3X4_9PHAE6.680e-1286.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A535IAW1_9CHLR1.270e-660.98Flotillin family protein (Fragment) n=1 Tax=Chloro... [more]
A0A7C7QQR8_9CHLR2.430e-657.89Flotillin family protein n=1 Tax=Anaerolineae bact... [more]
A0A1F8QSQ8_9CHLR3.120e-558.14Flotillin n=1 Tax=Chloroflexi bacterium RBG_16_56_... [more]
A0A3M2AF75_9CHLR3.130e-556.10Flotillin family protein (Fragment) n=1 Tax=Chloro... [more]
UPI001AD29B914.270e-561.36Inner membrane protein YqiK n=1 Tax=Anaerolineae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127863contigH-elongata_contig127863:462..581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D7G1I5
Preferred nameFLOT2
KEGG koko:K07192
KEGG Pathwayko04910,map04910
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
EggNOG free text desc.protein localization to membrane raft
EggNOG OGsCOG2268@1,KOG2668@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size114
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929758.1535833-UTR-H-elongata_contig127863:461..4671622929758.1535833-UTR-H-elongata_contig127863:461..467Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127863 462..467 +
1691679146.646044-UTR-H-elongata_contig127863:461..4671691679146.646044-UTR-H-elongata_contig127863:461..467Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127863 462..467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929758.1661522-CDS-H-elongata_contig127863:467..5811622929758.1661522-CDS-H-elongata_contig127863:467..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127863 468..581 +
1691679146.6553588-CDS-H-elongata_contig127863:467..5811691679146.6553588-CDS-H-elongata_contig127863:467..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127863 468..581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127863.2052.1prot_H-elongata_contig127863.2052.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127863 468..581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127863.2052.1

>prot_H-elongata_contig127863.2052.1 ID=prot_H-elongata_contig127863.2052.1|Name=mRNA_H-elongata_contig127863.2052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MVFISGDGGGAGSRLTQDVGNILSQLPVTVEALTGVDI
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mRNA from alignment at H-elongata_contig127863:462..581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127863.2052.1 ID=mRNA_H-elongata_contig127863.2052.1|Name=mRNA_H-elongata_contig127863.2052.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig127863:462..581+ (Himanthalia elongata Himel1 dioecious)
AAGCAGATGGTTTTCATTTCCGGTGATGGCGGCGGAGCTGGTAGCCGTCT
AACCCAAGATGTCGGCAACATCCTCTCCCAGCTGCCTGTTACGGTGGAGG
CTCTCACGGGGGTGGATATT
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Coding sequence (CDS) from alignment at H-elongata_contig127863:462..581+

>mRNA_H-elongata_contig127863.2052.1 ID=mRNA_H-elongata_contig127863.2052.1|Name=mRNA_H-elongata_contig127863.2052.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig127863:462..581+ (Himanthalia elongata Himel1 dioecious)
ATGGTTTTCATTTCCGGTGATGGCGGCGGAGCTGGTAGCCGTCTAACCCA
AGATGTCGGCAACATCCTCTCCCAGCTGCCTGTTACGGTGGAGGCTCTCA
CGGGGGTGGATATTATGGTTTTCATTTCCGGTGATGGCGGCGGAGCTGGT
AGCCGTCTAACCCAAGATGTCGGCAACATCCTCTCCCAGCTGCCTGTTAC
GGTGGAGGCTCTCACGGGGGTGGATATT
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