mRNA_H-elongata_contig127862.2051.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127862.2051.1
Unique NamemRNA_H-elongata_contig127862.2051.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 2.320e-87
Identity = 145/168 (86.31%), Postives = 147/168 (87.50%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV                GIEFMDLYSHLIPVYHLEP+EKITDAYL QYLWYEADKRHLFPNWIK   S P
Sbjct:  903 KDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV----------------GIEFMDLYSHLIPVYHLEPLEKITDAYLDQYLWYEADKRHLFPNWIKPSDSEP 1054
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: A0A6J8F080_MYTCO (PRPF8 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8F080_MYTCO)

HSP 1 Score: 261 bits (666), Expect = 6.330e-85
Identity = 132/168 (78.57%), Postives = 139/168 (82.74%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPY++ EEAVAIYTTTVHWLESR+FSPIPFPPLSYK+DTKLLILALERLKE YSV SRLN  QREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV                GIEFMDLYSHLIPVY +EP+EKITDAYL QYLWYEADKR LFP WIK   S P
Sbjct:  147 KDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV----------------GIEFMDLYSHLIPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADSEP 298
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: UPI0007DA6E29 (pre-mRNA-processing-splicing factor 8-like n=1 Tax=Cricetulus griseus TaxID=10029 RepID=UPI0007DA6E29)

HSP 1 Score: 259 bits (661), Expect = 6.180e-84
Identity = 129/168 (76.79%), Postives = 139/168 (82.74%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPY++ EEAVA+YTTTVHWLESR+FSPIPFPPLSYK+DTKLLILALERLKE YSV SRLN  QREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV                GIEFMDLYSHL+PVY +EP+EKITDAYL QYLWYEADKR LFP WIK   + P
Sbjct:  107 KDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV----------------GIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEP 258
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: A0A314ZAI9_PRUYE (Uncharacterized protein n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314ZAI9_PRUYE)

HSP 1 Score: 268 bits (685), Expect = 6.790e-83
Identity = 134/168 (79.76%), Postives = 142/168 (84.52%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPYV+PEEAVAIYTTTVHWLESRKFSPIPFPPLSYK+DTKLLILALERLKE+YSV  RLN +QREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV                GIEFMDLYS+LIPVY +EP+EKITDAYL QYLWYE DKRHLFPNWIK   S P
Sbjct:  457 KDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV----------------GIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEP 608
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: A0A3L6V125_9STRA (PROCN domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V125_9STRA)

HSP 1 Score: 265 bits (677), Expect = 1.300e-82
Identity = 131/168 (77.98%), Postives = 141/168 (83.93%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPYVS EEAVA+YTTTVHWLESRKF+PIPFPPLSYK+DTKLLILALERLKENYS N+RLN  QREELGLIEQAYDNPHEALSRIKRHLLTQRAFKE+                 IEFMDLYSHLIPVY +EP+EKITDAYL QYLWYEADKRHLFP+WIK   + P
Sbjct:  467 KDGPYVSAEEAVAVYTTTVHWLESRKFAPIPFPPLSYKHDTKLLILALERLKENYSANNRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEM----------------SIEFMDLYSHLIPVYEIEPLEKITDAYLDQYLWYEADKRHLFPSWIKPSDAEP 618
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: A0A7S1T0K3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T0K3_9CHLO)

HSP 1 Score: 255 bits (651), Expect = 2.590e-82
Identity = 127/168 (75.60%), Postives = 138/168 (82.14%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPYV+PEEAVAIYTTTVHWLESRKFSPIPFPPLSYK+DTKLLILALERLKE Y+V  RLN  QREELGL+EQAYDNPHEALSRIKRHLLTQRAFKEV                 IEFMDLY+HLIPV  +EP+EKI+D+YL QYLWYEADKRHLFPNW+K     P
Sbjct:   59 KDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKEQYTVAVRLNQQQREELGLVEQAYDNPHEALSRIKRHLLTQRAFKEV----------------SIEFMDLYTHLIPVVVIEPLEKISDSYLDQYLWYEADKRHLFPNWVKPADLEP 210
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: F0W3E9_9STRA (PREDICTED: similar to CG8877PA putative n=2 Tax=Oomycota TaxID=4762 RepID=F0W3E9_9STRA)

HSP 1 Score: 273 bits (699), Expect = 5.570e-82
Identity = 136/168 (80.95%), Postives = 144/168 (85.71%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPYVSPEEAVAIYTTTVHWLESRKF+PIPFPPLSYK+DTKLLILALERLKENY+VNSRLN   REELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV                GI+FMDLYSHLIPVY +EP+EKITDAYL QYLWYEADKRHLFP+WIK G S P
Sbjct:  816 KDGPYVSPEEAVAIYTTTVHWLESRKFAPIPFPPLSYKHDTKLLILALERLKENYAVNSRLNQSHREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV----------------GIDFMDLYSHLIPVYDIEPLEKITDAYLDQYLWYEADKRHLFPSWIKPGDSEP 967
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: A0A7J6VC43_THATH (Pre-mrna-processing-splicing factor n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VC43_THATH)

HSP 1 Score: 259 bits (661), Expect = 5.620e-82
Identity = 127/168 (75.60%), Postives = 141/168 (83.93%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPY++PEEAVA+YTTTV WLE+RKFSPIPFPPLSYK+DTKLLILALERLKE+YSV  RLN +QREELGLIEQAYDNPHEALSRIKRHLLTQR+FK+V                GIEFMDLY++LIPVY +EP+EKITDAYL QYLWYE DKRHLFPNWIK   S P
Sbjct:  258 KDGPYITPEEAVAMYTTTVRWLETRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRSFKDV----------------GIEFMDLYNYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKSADSEP 409
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: F0YIE3_AURAN (MPN domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIE3_AURAN)

HSP 1 Score: 271 bits (694), Expect = 2.620e-81
Identity = 135/168 (80.36%), Postives = 142/168 (84.52%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPYVS EEAVAIYTTTVHWLESRKFSPIPFPPLSYK+DTKLLILALERLKENY +NSRLN  QREELGLIEQAYDNPHEALSR+KRHLLTQRAFKEV                GI+FMDLYSHLIPVY +EP+EKITDAYL QYLWYEADKRHLFPNWIK   S P
Sbjct:  833 KDGPYVSAEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKENYGINSRLNQNQREELGLIEQAYDNPHEALSRVKRHLLTQRAFKEV----------------GIQFMDLYSHLIPVYEVEPLEKITDAYLDQYLWYEADKRHLFPNWIKPADSEP 984
[Close]
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Match: A0A8J2WY90_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY90_9STRA)

HSP 1 Score: 271 bits (693), Expect = 3.530e-81
Identity = 134/168 (79.76%), Postives = 142/168 (84.52%), Query Frame = 1 
Query:    1 QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALERLKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVCTLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYEADKRHLFPNWIKVGFSSP 504
            +DGPYVS EEAVAIYTTTVHWLESRKFSPIPFPPLSYK+DTKLLILALERLKENY +NSRLN  QREELGLIEQAYDNPHEALSR+KRHLLTQRAFKEV                G++FMDLYSHLIPVY +EP+EKITDAYL QYLWYEADKRHLFPNWIK   S P
Sbjct:  308 KDGPYVSAEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKENYGINSRLNQNQREELGLIEQAYDNPHEALSRVKRHLLTQRAFKEV----------------GVQFMDLYSHLIPVYEVEPLEKITDAYLDQYLWYEADKRHLFPNWIKPADSEP 459
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127862.2051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K085_9PHAE2.320e-8786.31MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6J8F080_MYTCO6.330e-8578.57PRPF8 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A... [more]
UPI0007DA6E296.180e-8476.79pre-mRNA-processing-splicing factor 8-like n=1 Tax... [more]
A0A314ZAI9_PRUYE6.790e-8379.76Uncharacterized protein n=1 Tax=Prunus yedoensis v... [more]
A0A3L6V125_9STRA1.300e-8277.98PROCN domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S1T0K3_9CHLO2.590e-8275.60Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
F0W3E9_9STRA5.570e-8280.95PREDICTED: similar to CG8877PA putative n=2 Tax=Oo... [more]
A0A7J6VC43_THATH5.620e-8275.60Pre-mrna-processing-splicing factor n=1 Tax=Thalic... [more]
F0YIE3_AURAN2.620e-8180.36MPN domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A8J2WY90_9STRA3.530e-8179.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127862contigH-elongata_contig127862:270..1448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.4
Seed ortholog evalue1.4e-76
Seed eggNOG ortholog2880.D8LLJ8
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGsCOG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size504
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127862.2051.1prot_H-elongata_contig127862.2051.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127862 270..1448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929758.0829406-CDS-H-elongata_contig127862:269..3951622929758.0829406-CDS-H-elongata_contig127862:269..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127862 270..395 +
1691679146.6204674-CDS-H-elongata_contig127862:269..3951691679146.6204674-CDS-H-elongata_contig127862:269..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127862 270..395 +
1622929758.1016142-CDS-H-elongata_contig127862:785..10011622929758.1016142-CDS-H-elongata_contig127862:785..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127862 786..1001 +
1691679146.6300085-CDS-H-elongata_contig127862:785..10011691679146.6300085-CDS-H-elongata_contig127862:785..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127862 786..1001 +
1622929758.1161323-CDS-H-elongata_contig127862:1286..14481622929758.1161323-CDS-H-elongata_contig127862:1286..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127862 1287..1448 +
1691679146.637945-CDS-H-elongata_contig127862:1286..14481691679146.637945-CDS-H-elongata_contig127862:1286..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127862 1287..1448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127862.2051.1

>prot_H-elongata_contig127862.2051.1 ID=prot_H-elongata_contig127862.2051.1|Name=mRNA_H-elongata_contig127862.2051.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
QDGPYVSPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKYDTKLLILALER
LKENYSVNSRLNAIQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVC
TLDEVERCVWNEVVVGIEFMDLYSHLIPVYHLEPIEKITDAYLAQYLWYE
ADKRHLFPNWIKVGFSSP
back to top

mRNA from alignment at H-elongata_contig127862:270..1448+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127862.2051.1 ID=mRNA_H-elongata_contig127862.2051.1|Name=mRNA_H-elongata_contig127862.2051.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1179bp|location=Sequence derived from alignment at H-elongata_contig127862:270..1448+ (Himanthalia elongata Himel1 dioecious)
CAGGACGGACCGTACGTGAGCCCGGAGGAGGCAGTCGCGATCTACACGAC
CACCGTGCACTGGCTGGAGAGCCGCAAGTTCTCGCCAATTCCTTTCCCCC
CTCTCTCCTACAAGTACGACACCAAGGTGTGACGTCACGTGCTGCTATCC
TGTGCAATGGTTGATGTGTGTATGTATGTGTGTGTGAGAGTTGTGTTTTT
TTGGACCCGATGTTCGATCTTCACAATATACTAAAAATATCACTAGCCGA
TCGAGCTACTAAATACTTTTATTCACCATGATTATCCACCACTGTACCAT
ATCCACTACCGTACCACATCTGCTACTGTTTTACCATATCTACTACTGCT
GTACCATATCCAGTACTGTTGTACCATATCCACCACTGTACCATATCCAC
TACCGTACCATTATCCCATATCCACTACTGTTGTACCATATCCACTACGT
TACAATCAATCTTTTTCTGCTCCTTCCGTGCCCACCCCCTCCCCTTCTCC
CCTTTCCACCAACCAGCTTCTTATTCTTGCGTTGGAGCGCCTGAAGGAAA
ACTACAGCGTGAACTCCCGTCTCAACGCCATCCAGAGAGAGGAGCTCGGG
CTGATCGAGCAGGCCTACGACAACCCTCACGAGGCGCTCAGCCGCATCAA
ACGGCACCTTCTCACCCAGCGTGCTTTCAAGGAGGTATGTACACTAGACG
AGGTCGAGAGGTGTGTCTGGAACGAGGTTGTTGTGCTTCCGTGAAGCACG
AAACAAACGAACTCCTGAAAGTACTAAAAACCAACAGAAACACTCATACA
TACCCAAACAAACTCTTGAAATGTTAAAAATTACGATACAAACACGCCTC
CTTACCCTCTCCTCCCTCCTCTCCAAAGCAAAAACGACCAACACACGCAC
ATATCTCTTTTCCGTCAGCGCGTGAGCCAATATATATATACATGCATATA
TATATATATATATATATATATATAACATACATATATTTTTTTCTCGTGCG
GCGTCCCCTTGATTCAGGTGGGCATCGAGTTCATGGACCTGTACAGTCAT
CTCATCCCGGTGTACCATCTGGAGCCTATCGAGAAGATAACGGATGCCTA
TCTGGCCCAGTACCTGTGGTACGAGGCGGACAAGCGGCACCTCTTCCCCA
ACTGGATCAAGGTCGGTTTCTCGTCCCCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127862:270..1448+

>mRNA_H-elongata_contig127862.2051.1 ID=mRNA_H-elongata_contig127862.2051.1|Name=mRNA_H-elongata_contig127862.2051.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig127862:270..1448+ (Himanthalia elongata Himel1 dioecious)
CAGGACGGACCGTACGTGAGCCCGGAGGAGGCAGTCGCGATCTACACGAC
CACCGTGCACTGGCTGGAGAGCCGCAAGTTCTCGCCAATTCCTTTCCCCC
CTCTCTCCTACAAGTACGACACCAAGCAGGACGGACCGTACGTGAGCCCG
GAGGAGGCAGTCGCGATCTACACGACCACCGTGCACTGGCTGGAGAGCCG
CAAGTTCTCGCCAATTCCTTTCCCCCCTCTCTCCTACAAGTACGACACCA
AGCTTCTTATTCTTGCGTTGGAGCGCCTGAAGGAAAACTACAGCGTGAAC
TCCCGTCTCAACGCCATCCAGAGAGAGGAGCTCGGGCTGATCGAGCAGGC
CTACGACAACCCTCACGAGGCGCTCAGCCGCATCAAACGGCACCTTCTCA
CCCAGCGTGCTTTCAAGGAGGTATGTACACTAGACGAGGTCGAGAGGTGT
GTCTGGAACGAGGTTGTTCTTCTTATTCTTGCGTTGGAGCGCCTGAAGGA
AAACTACAGCGTGAACTCCCGTCTCAACGCCATCCAGAGAGAGGAGCTCG
GGCTGATCGAGCAGGCCTACGACAACCCTCACGAGGCGCTCAGCCGCATC
AAACGGCACCTTCTCACCCAGCGTGCTTTCAAGGAGGTATGTACACTAGA
CGAGGTCGAGAGGTGTGTCTGGAACGAGGTTGTTGTGGGCATCGAGTTCA
TGGACCTGTACAGTCATCTCATCCCGGTGTACCATCTGGAGCCTATCGAG
AAGATAACGGATGCCTATCTGGCCCAGTACCTGTGGTACGAGGCGGACAA
GCGGCACCTCTTCCCCAACTGGATCAAGGTCGGTTTCTCGTCCCCAGTGG
GCATCGAGTTCATGGACCTGTACAGTCATCTCATCCCGGTGTACCATCTG
GAGCCTATCGAGAAGATAACGGATGCCTATCTGGCCCAGTACCTGTGGTA
CGAGGCGGACAAGCGGCACCTCTTCCCCAACTGGATCAAGGTCGGTTTCT
CGTCCCCA
back to top