mRNA_H-elongata_contig12782.2047.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12782.2047.1
Unique NamemRNA_H-elongata_contig12782.2047.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12782.2047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12782contigH-elongata_contig12782:5882..6386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-glucosidase, family GH3
Ec32 orthologEc-20_004800.1
Exons1
Model size505
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12782.2047.1prot_H-elongata_contig12782.2047.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12782 5907..6347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.803316-UTR-H-elongata_contig12782:5881..59061622929757.803316-UTR-H-elongata_contig12782:5881..5906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12782 5882..5906 +
1691679146.5394206-UTR-H-elongata_contig12782:5881..59061691679146.5394206-UTR-H-elongata_contig12782:5881..5906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12782 5882..5906 +
1622929757.8242087-UTR-H-elongata_contig12782:6347..63861622929757.8242087-UTR-H-elongata_contig12782:6347..6386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12782 6348..6386 +
1691679146.5573065-UTR-H-elongata_contig12782:6347..63861691679146.5573065-UTR-H-elongata_contig12782:6347..6386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12782 6348..6386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.8134394-CDS-H-elongata_contig12782:5906..63471622929757.8134394-CDS-H-elongata_contig12782:5906..6347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12782 5907..6347 +
1691679146.549336-CDS-H-elongata_contig12782:5906..63471691679146.549336-CDS-H-elongata_contig12782:5906..6347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12782 5907..6347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12782.2047.1

>prot_H-elongata_contig12782.2047.1 ID=prot_H-elongata_contig12782.2047.1|Name=mRNA_H-elongata_contig12782.2047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MGVRIGGGGGGGGRRWLQRKRSFSAWGGEKAKQVAIELGRGGFDYEAYNN
DDEAFGSLGLEKEGRRGGPEKGQGATAEGSGKLQPEVASRGSWGGTEGRE
SGRQRRNGKGKRYVPQLPPHTEAHAETESQQALLGAAAHDGGDDSM*
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mRNA from alignment at H-elongata_contig12782:5882..6386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12782.2047.1 ID=mRNA_H-elongata_contig12782.2047.1|Name=mRNA_H-elongata_contig12782.2047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=505bp|location=Sequence derived from alignment at H-elongata_contig12782:5882..6386+ (Himanthalia elongata Himel1 dioecious)
CGGCGTTAGGCTGCACGGGTCGGGGATGGGGGTTAGAATCGGAGGAGGAG
GAGGCGGGGGAGGGCGGCGATGGTTGCAACGGAAGCGTTCCTTTTCCGCT
TGGGGAGGCGAAAAGGCGAAGCAGGTGGCGATTGAGCTCGGTCGCGGGGG
TTTCGATTACGAGGCGTACAACAACGACGACGAGGCGTTTGGCTCGCTGG
GGCTCGAGAAAGAGGGGCGGCGAGGTGGACCGGAGAAGGGTCAGGGCGCT
ACGGCAGAAGGTTCGGGGAAGCTGCAGCCAGAGGTGGCGTCGCGAGGATC
ATGGGGGGGCACAGAGGGGAGAGAATCGGGGAGACAGAGGCGGAACGGGA
AGGGGAAGAGATACGTGCCGCAGTTGCCTCCTCACACAGAAGCCCACGCG
GAGACAGAATCGCAACAGGCCTTATTAGGGGCAGCGGCTCACGATGGTGG
CGATGATTCGATGTAAATTTCGTGGAGGAGTTCGTTGTGAGTATAGTATG
CAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig12782:5882..6386+

>mRNA_H-elongata_contig12782.2047.1 ID=mRNA_H-elongata_contig12782.2047.1|Name=mRNA_H-elongata_contig12782.2047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig12782:5882..6386+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGTTAGAATCGGAGGAGGAGGAGGCGGGGGAGGGCGGCGATGGTT
GCAACGGAAGCGTTCCTTTTCCGCTTGGGGAGGCGAAAAGGCGAAGCAGG
TGGCGATTGAGCTCGGTCGCGGGGGTTTCGATTACGAGGCGTACAACAAC
GACGACGAGGCGTTTGGCTCGCTGGGGCTCGAGAAAGAGGGGCGGCGAGG
TGGACCGGAGAAGGGTCAGGGCGCTACGGCAGAAGGTTCGGGGAAGCTGC
AGCCAGAGGTGGCGTCGCGAGGATCATGGGGGGGCACAGAGGGGAGAGAA
TCGGGGAGACAGAGGCGGAACGGGAAGGGGAAGAGATACGTGCCGCAGTT
GCCTCCTCACACAGAAGCCCACGCGGAGACAGAATCGCAACAGGCCTTAT
TAGGGGCAGCGGCTCACGATGGTGGCGATGATTCGATGTAAATGGGGGTT
AGAATCGGAGGAGGAGGAGGCGGGGGAGGGCGGCGATGGTTGCAACGGAA
GCGTTCCTTTTCCGCTTGGGGAGGCGAAAAGGCGAAGCAGGTGGCGATTG
AGCTCGGTCGCGGGGGTTTCGATTACGAGGCGTACAACAACGACGACGAG
GCGTTTGGCTCGCTGGGGCTCGAGAAAGAGGGGCGGCGAGGTGGACCGGA
GAAGGGTCAGGGCGCTACGGCAGAAGGTTCGGGGAAGCTGCAGCCAGAGG
TGGCGTCGCGAGGATCATGGGGGGGCACAGAGGGGAGAGAATCGGGGAGA
CAGAGGCGGAACGGGAAGGGGAAGAGATACGTGCCGCAGTTGCCTCCTCA
CACAGAAGCCCACGCGGAGACAGAATCGCAACAGGCCTTATTAGGGGCAG
CGGCTCACGATGGTGGCGATGATTCGATGTAA
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