mRNA_H-elongata_contig127706.2042.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127706.2042.1
Unique NamemRNA_H-elongata_contig127706.2042.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127706.2042.1 vs. uniprot
Match: D8LMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ8_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 7.070e-46
Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 QSTINRTPTMTLVGLLVGLVLSVAKGAFGDLLRAMGLATILAVRRSRRLSAEYPLLPYARRALLMSSRRPFPPADNPWRYKRADALAEMEEEDRVLDDRNLPPEFSMAK 327
            +STI RTP M+LVGLLVGLVLSVA+GAFGDL RA+GLA++LAV RSRRLSAEYP LPYARRAL+M  RRPFPPA+NPW+YKRADA+AE+E+    LD  NLP EFSMAK
Sbjct:    4 KSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAK 112
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BLAST of mRNA_H-elongata_contig127706.2042.1 vs. uniprot
Match: A0A6H5K822_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K822_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.190e-43
Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 QSTINRTPTMTLVGLLVGLVLSVAKGAFGDLLRAMGLATILAVRRSRRLSAEYPLLPYARRALLMSSRRPFPPADNPWRYKRADALAEMEEEDRVLDDRNLPPEFSMAK 327
            +STI RTP M+LVGLLVGLVLSVA+GAFGDL RA+GLA++LAV RSRRLSAEYP LPYARRAL+M  RRPFPPA+NPW+YKRADA+AE+E+    LD  NLP EFSMAK
Sbjct:  222 KSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAK 330
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BLAST of mRNA_H-elongata_contig127706.2042.1 vs. uniprot
Match: A0A835Z6C8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.560e-15
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 QSTINRTPTMTLVGLLVGLVLSVAKGAFGDLLRAMGLATILAVRRSRRLSAEYPLLPYARRALLMSSRRPFPP 219
            +ST+++TP+M L GL +GL+LS+A+GAFGDLLRA+GL   L V RS  + ++YP+LP  + A+ M  RRPFPP
Sbjct:  168 ESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPP 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127706.2042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMQ8_ECTSI7.070e-4676.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K822_9PHAE2.190e-4376.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6C8_9STRA1.560e-1554.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127706contigH-elongata_contig127706:1381..1707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.1e-33
Seed eggNOG ortholog2880.D8LMQ8
EggNOG OGs2E303@1,2SA5N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_003310.1
Exons1
Model size327
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.3752878-UTR-H-elongata_contig127706:1380..14071622929757.3752878-UTR-H-elongata_contig127706:1380..1407Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127706 1381..1407 +
1691679146.2396264-UTR-H-elongata_contig127706:1380..14071691679146.2396264-UTR-H-elongata_contig127706:1380..1407Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127706 1381..1407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.3886397-CDS-H-elongata_contig127706:1407..17071622929757.3886397-CDS-H-elongata_contig127706:1407..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127706 1408..1707 +
1691679146.2497368-CDS-H-elongata_contig127706:1407..17071691679146.2497368-CDS-H-elongata_contig127706:1407..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127706 1408..1707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127706.2042.1prot_H-elongata_contig127706.2042.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127706 1408..1707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127706.2042.1

>prot_H-elongata_contig127706.2042.1 ID=prot_H-elongata_contig127706.2042.1|Name=mRNA_H-elongata_contig127706.2042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MTLVGLLVGLVLSVAKGAFGDLLRAMGLATILAVRRSRRLSAEYPLLPYA
RRALLMSSRRPFPPADNPWRYKRADALAEMEEEDRVLDDRNLPPEFSMAK
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mRNA from alignment at H-elongata_contig127706:1381..1707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127706.2042.1 ID=mRNA_H-elongata_contig127706.2042.1|Name=mRNA_H-elongata_contig127706.2042.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig127706:1381..1707+ (Himanthalia elongata Himel1 dioecious)
CAGTCCACGATTAACCGCACGCCCACGATGACTCTCGTGGGCCTGCTTGT
CGGCCTTGTCCTGAGCGTGGCAAAGGGTGCATTTGGCGACCTCCTTCGCG
CCATGGGACTGGCGACCATCCTCGCCGTGCGCCGCAGCCGCCGCCTTTCG
GCCGAGTACCCCTTATTACCCTACGCCCGGCGGGCTCTGCTGATGAGTTC
TCGGCGGCCGTTCCCGCCCGCCGATAATCCGTGGAGATACAAGCGGGCAG
ACGCATTGGCGGAGATGGAAGAAGAAGACAGAGTTCTCGACGACCGGAAT
TTGCCGCCGGAATTCAGCATGGCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig127706:1381..1707+

>mRNA_H-elongata_contig127706.2042.1 ID=mRNA_H-elongata_contig127706.2042.1|Name=mRNA_H-elongata_contig127706.2042.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig127706:1381..1707+ (Himanthalia elongata Himel1 dioecious)
ATGACTCTCGTGGGCCTGCTTGTCGGCCTTGTCCTGAGCGTGGCAAAGGG
TGCATTTGGCGACCTCCTTCGCGCCATGGGACTGGCGACCATCCTCGCCG
TGCGCCGCAGCCGCCGCCTTTCGGCCGAGTACCCCTTATTACCCTACGCC
CGGCGGGCTCTGCTGATGAGTTCTCGGCGGCCGTTCCCGCCCGCCGATAA
TCCGTGGAGATACAAGCGGGCAGACGCATTGGCGGAGATGGAAGAAGAAG
ACAGAGTTCTCGACGACCGGAATTTGCCGCCGGAATTCAGCATGGCCAAG
ATGACTCTCGTGGGCCTGCTTGTCGGCCTTGTCCTGAGCGTGGCAAAGGG
TGCATTTGGCGACCTCCTTCGCGCCATGGGACTGGCGACCATCCTCGCCG
TGCGCCGCAGCCGCCGCCTTTCGGCCGAGTACCCCTTATTACCCTACGCC
CGGCGGGCTCTGCTGATGAGTTCTCGGCGGCCGTTCCCGCCCGCCGATAA
TCCGTGGAGATACAAGCGGGCAGACGCATTGGCGGAGATGGAAGAAGAAG
ACAGAGTTCTCGACGACCGGAATTTGCCGCCGGAATTCAGCATGGCCAAG
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