mRNA_H-elongata_contig102331.204.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102331.204.1
Unique NamemRNA_H-elongata_contig102331.204.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102331.204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102331contigH-elongata_contig102331:901..1536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102331.204.1prot_H-elongata_contig102331.204.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102331 1119..1448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.5321054-UTR-H-elongata_contig102331:900..11181622929561.5321054-UTR-H-elongata_contig102331:900..1118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102331 901..1118 +
1691679070.996133-UTR-H-elongata_contig102331:900..11181691679070.996133-UTR-H-elongata_contig102331:900..1118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102331 901..1118 +
1622929561.5626993-UTR-H-elongata_contig102331:1448..15361622929561.5626993-UTR-H-elongata_contig102331:1448..1536Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102331 1449..1536 +
1691679071.0190287-UTR-H-elongata_contig102331:1448..15361691679071.0190287-UTR-H-elongata_contig102331:1448..1536Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102331 1449..1536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.5481231-CDS-H-elongata_contig102331:1118..14481622929561.5481231-CDS-H-elongata_contig102331:1118..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102331 1119..1448 +
1691679071.007907-CDS-H-elongata_contig102331:1118..14481691679071.007907-CDS-H-elongata_contig102331:1118..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102331 1119..1448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102331.204.1

>prot_H-elongata_contig102331.204.1 ID=prot_H-elongata_contig102331.204.1|Name=mRNA_H-elongata_contig102331.204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MFSGLTSESGGARPLPRIHFPTEISPRRLHRYSRTSPIRLPQNEFFAREG
AVCLPQHLLGSLSAPFSLQLCLCNFRALNRAAIPPRSQFLLLSEKKCKFP
YRRRTRYLV*
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mRNA from alignment at H-elongata_contig102331:901..1536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102331.204.1 ID=mRNA_H-elongata_contig102331.204.1|Name=mRNA_H-elongata_contig102331.204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=636bp|location=Sequence derived from alignment at H-elongata_contig102331:901..1536+ (Himanthalia elongata Himel1 dioecious)
CTCGAGAGTTAGGAAAAAAAAGTGACTGAGCGAGCTTGCTTCTTTATATA
CTGTTTAAATAAGTTCGGTCGAGTGGCCTCTAGACGCACTGCTGCATTGG
GACAATGGACTATCTCGGGATTGGCGGGCCAACTCTTCTTGGAGCGCCAC
TCTATCCCATCTCAGCGTAACCACGTGAGTGTTACCAGTACCACTGTCAA
TAAAAGCGTACACCCTCAATGTTTTCGGGGCTGACATCTGAATCTGGAGG
CGCTCGACCTCTCCCCCGGATTCACTTTCCCACAGAAATATCGCCACGGA
GACTCCATAGGTACAGTAGGACGTCGCCCATTCGCCTACCTCAGAATGAG
TTTTTCGCTCGAGAAGGCGCTGTCTGCCTACCTCAGCATCTTTTGGGCAG
CCTTTCCGCTCCTTTTTCTTTGCAGCTTTGCCTCTGCAATTTCCGTGCGC
TCAACCGTGCAGCGATTCCCCCACGAAGTCAATTTCTCCTGCTCTCCGAA
AAAAAATGCAAGTTTCCATATCGACGAAGAACACGATATCTTGTTTGAAT
AAGTTCGGCCGAGTGGCCTGACGTTGACACTCTATAACAGGGTTCACGTG
GAGGTATATGTAATTGACGTACTTGATGCTTTAACT
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Coding sequence (CDS) from alignment at H-elongata_contig102331:901..1536+

>mRNA_H-elongata_contig102331.204.1 ID=mRNA_H-elongata_contig102331.204.1|Name=mRNA_H-elongata_contig102331.204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig102331:901..1536+ (Himanthalia elongata Himel1 dioecious)
ATGTTTTCGGGGCTGACATCTGAATCTGGAGGCGCTCGACCTCTCCCCCG
GATTCACTTTCCCACAGAAATATCGCCACGGAGACTCCATAGGTACAGTA
GGACGTCGCCCATTCGCCTACCTCAGAATGAGTTTTTCGCTCGAGAAGGC
GCTGTCTGCCTACCTCAGCATCTTTTGGGCAGCCTTTCCGCTCCTTTTTC
TTTGCAGCTTTGCCTCTGCAATTTCCGTGCGCTCAACCGTGCAGCGATTC
CCCCACGAAGTCAATTTCTCCTGCTCTCCGAAAAAAAATGCAAGTTTCCA
TATCGACGAAGAACACGATATCTTGTTTGAATGTTTTCGGGGCTGACATC
TGAATCTGGAGGCGCTCGACCTCTCCCCCGGATTCACTTTCCCACAGAAA
TATCGCCACGGAGACTCCATAGGTACAGTAGGACGTCGCCCATTCGCCTA
CCTCAGAATGAGTTTTTCGCTCGAGAAGGCGCTGTCTGCCTACCTCAGCA
TCTTTTGGGCAGCCTTTCCGCTCCTTTTTCTTTGCAGCTTTGCCTCTGCA
ATTTCCGTGCGCTCAACCGTGCAGCGATTCCCCCACGAAGTCAATTTCTC
CTGCTCTCCGAAAAAAAATGCAAGTTTCCATATCGACGAAGAACACGATA
TCTTGTTTGA
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