mRNA_H-elongata_contig12765.2039.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12765.2039.1
Unique NamemRNA_H-elongata_contig12765.2039.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: A0A6H5JK92_9PHAE (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK92_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.100e-37
Identity = 70/108 (64.81%), Postives = 90/108 (83.33%), Query Frame = 2 
Query:  581 FYMGNSEKVDGVVYMGSGNRIGEAMAGVDVPALLLWGTLDPFCPAEAMEKSAHKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKALCRFIDQKVS 904
            FY  + E VDGVVYMGSGN+IG+AM G +VPA++L G+ DP+ PAEA+ +SAHKLPKG E V+VEGG+HRGF SY  QPLDW+ATI++QEQR I+V+AL  FID++V+
Sbjct:  237 FYTEHPESVDGVVYMGSGNKIGDAMKGSEVPAMVLRGSRDPYVPAEALARSAHKLPKGAEIVVVEGGSHRGFGSYKSQPLDWQATITEQEQRGIIVEALTDFIDRRVA 344
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: D7FW29_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW29_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.830e-29
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 2 
Query:  581 FYMGNSEKVDGVVYMGSGNRIGEAMAGVDVPALLLWGTLDPFCPAEAMEKSAHKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKALCRFIDQKVS 904
            F     E V+GVVYMG GN+    +A +D+P+L++ G+ DPF P + M+K+  K PKGTE  IVEGGNHRGFASY  QPLDWEATIS  EQ RIV++AL  FI++KV+
Sbjct:  204 FTEARPECVNGVVYMGGGNKPTGKIANLDLPSLVIRGSRDPFTPEKDMQKAVDKWPKGTETCIVEGGNHRGFASYGRQPLDWEATISPDEQMRIVLEALTEFIERKVA 311
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: B6FWF2_CLOHT (Abhydrolase_5 domain-containing protein n=4 Tax=Peptacetobacter hiranonis TaxID=89152 RepID=B6FWF2_CLOHT)

HSP 1 Score: 71.2 bits (173), Expect = 8.940e-10
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 2 
Query:  596 SEKVDGVVYMGS---GNRIGEAMAGVDVPALLLWGTLDPFCPAEAMEKSAHKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKALCRFIDQKVS 904
            + K+ G+VY+ S   G++I E  A V    L +WG+ D     E + K+   LPK TE V +EGGNH  F  Y  Q  D ++ I + +Q  I V+++C FI  K++
Sbjct:  198 NNKIKGIVYLASYPSGDKIKETGAEV----LSIWGSKDGVINFENLIKAREDLPKDTEYVEIEGGNHSAFGDYGLQKGDTKSIIPENKQLDITVESICNFIGDKIN 299
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: UPI000F7B08B1 (alpha/beta hydrolase n=1 Tax=Companilactobacillus hulinensis TaxID=2486007 RepID=UPI000F7B08B1)

HSP 1 Score: 67.4 bits (163), Expect = 7.580e-9
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 2 
Query:  593 NSEKVDGVVYMGSGNRIGEAMAGVDVPALLLWGTLDPFCPAEAMEKSAHKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKALCRFIDQ 895
            N++++ GV  +GS       ++ V+VP L + G+ D     +A +K+   LPK TE V + GGNH GF SY  Q  D  A IS  +Q+R++   L  ++++
Sbjct:  134 NTKELKGVFLLGSYPEKKGNLSNVNVPVLSITGSEDGVLNQKAYKKAKKYLPKNTEYVTINGGNHAGFGSYGKQKGDNPAKISNADQQRVIADLLLHWLNK 234
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: A0A7V8XQG8_9BACT (Abhydrolase_5 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V8XQG8_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.280e-8
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 2 
Query:  683 LWGTLDPFCPAEAMEKSAHKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKALCRFI 889
            ++GT D       +E++   LP  T  V ++GGNH  F SY +QP DW ATIS++EQ+R  ++A+   +
Sbjct:    4 VYGTRDTVADVAKLERTKSNLPATTRHVRIDGGNHSQFGSYGFQPGDWLATISREEQQRQTLQAVLEIL 72
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: A0A7W1I3L3_9BACT (Alpha/beta hydrolase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1I3L3_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 1.440e-8
Identity = 29/89 (32.58%), Postives = 52/89 (58.43%), Query Frame = 2 
Query:  611 GVVYMGSGNRIGEAMAGVDVPALLLWGTLDPFCPAEAMEKSAHKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKAL 877
            G+V +G+ +    ++A + +P   ++G+ D     E +  +   LP  T  V ++GGNH  F  Y +QP DW ATI+++EQ+R+ + A+
Sbjct:  161 GLVLIGTSHPRDFSLANIPIPVTRVFGSRDTVADEEKVRDARRNLPPDTHDVRIDGGNHSQFGYYGFQPGDWPATITREEQQRLTLDAV 249
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: A0A1P8Q5N8_9LACO (Alpha/beta hydrolase n=1 Tax=Companilactobacillus allii TaxID=1847728 RepID=A0A1P8Q5N8_9LACO)

HSP 1 Score: 64.7 bits (156), Expect = 6.190e-8
Identity = 35/101 (34.65%), Postives = 54/101 (53.47%), Query Frame = 2 
Query:  593 NSEKVDGVVYMGSGNRIGEAMAGVDVPALLLWGTLDPFCPAEAMEKSAHKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKALCRFIDQ 895
            N++++ GV  +GS       +  V  P + +  + D     +A +KS   LPK T+ V + GGNH GF SY  Q  D  A IS  +Q++IV   L R++D+
Sbjct:  134 NTKELKGVFLLGSYPEKKGNLRNVKEPVISITASRDGVLNQKAYKKSKKYLPKNTDFVTINGGNHAGFGSYGKQSGDNSAKISNSDQQKIVADLLLRWLDK 234
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: A0A4Q2K456_9ACTN (Alpha/beta hydrolase n=2 Tax=Senegalimassilia faecalis TaxID=2509433 RepID=A0A4Q2K456_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 3.460e-7
Identity = 30/99 (30.30%), Postives = 55/99 (55.56%), Query Frame = 2 
Query:  581 FYMGNSEKVDGVVYMGSGNRIGEAMAGVDVPALLLWGTLDPFCPAEAMEKSAHKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKAL 877
            +  GN++K++GV ++G+       ++  ++ AL+++G  D       +  +   LP G + +++EGGNH GFA Y  Q  D EA+IS  +Q+     A+
Sbjct:  151 YAAGNADKLEGVAFLGA--YAASDLSTTNLKALVIYGNADGVLNRGKLATNETNLPAGAQTLVIEGGNHAGFADYGPQAGDGEASISPTQQQSQTAAAI 247
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: A0A0R1KF58_9LACO (Abhydrolase_5 domain-containing protein n=1 Tax=Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 TaxID=1423775 RepID=A0A0R1KF58_9LACO)

HSP 1 Score: 59.3 bits (142), Expect = 3.780e-7
Identity = 32/104 (30.77%), Postives = 55/104 (52.88%), Query Frame = 2 
Query:  593 NSEKVDGVVYMGSGNRIGEAMAGVDVPALLLWGTLDPFCPAEAMEKSAHKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKALCRFIDQKVS 904
            N++++ GV ++ S       +  V  P L + G+ D        +K+   LPK T+ V + GGNH GF SY  Q  D +A IS  +Q+R++   L  +++ +V+
Sbjct:    9 NTKELRGVFFLASYPEKKGDLRNVKEPVLSITGSNDGVLNKTNYKKAKKLLPKSTDYVEINGGNHAGFGSYGKQKGDNKAEISNADQQRVIADILIHWLNGQVN 112
[Close]
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Match: D7FXM1_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM1_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 5.480e-7
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:  581 FYMGNSEKVDGVVYMGSGNRIGEAMAGVDVPALLLWGTLDPFCPAE---AMEKSAHKLPKGTEKVIV 772
            FY  + E VDGVVYMGSGN IG+A+ G +VPA++L G+ DPF PAE   A +KS       T +V +
Sbjct:  238 FYAEHPEIVDGVVYMGSGNMIGDALKGSEVPAMVLRGSRDPFVPAEVQTARKKSVLSAVVYTTRVWI 304
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12765.2039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JK92_9PHAE1.100e-3764.81Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
D7FW29_ECTSI1.830e-2957.41Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
B6FWF2_CLOHT8.940e-1036.79Abhydrolase_5 domain-containing protein n=4 Tax=Pe... [more]
UPI000F7B08B17.580e-934.65alpha/beta hydrolase n=1 Tax=Companilactobacillus ... [more]
A0A7V8XQG8_9BACT1.280e-839.13Abhydrolase_5 domain-containing protein n=1 Tax=Ac... [more]
A0A7W1I3L3_9BACT1.440e-832.58Alpha/beta hydrolase n=1 Tax=Acidobacteria bacteri... [more]
A0A1P8Q5N8_9LACO6.190e-834.65Alpha/beta hydrolase n=1 Tax=Companilactobacillus ... [more]
A0A4Q2K456_9ACTN3.460e-730.30Alpha/beta hydrolase n=2 Tax=Senegalimassilia faec... [more]
A0A0R1KF58_9LACO3.780e-730.77Abhydrolase_5 domain-containing protein n=1 Tax=Co... [more]
D7FXM1_ECTSI5.480e-750.75Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12765contigH-elongata_contig12765:193..5600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue5.1e-27
Seed eggNOG ortholog2880.D7FW29
EggNOG free text desc.Alpha/beta hydrolase family
EggNOG OGs2EWUG@1,2SYKF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size2027
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12765.2039.1prot_H-elongata_contig12765.2039.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12765 1304..5014 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.735186-UTR-H-elongata_contig12765:192..13031622929756.735186-UTR-H-elongata_contig12765:192..1303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12765 193..1303 -
1691679145.9982748-UTR-H-elongata_contig12765:192..13031691679145.9982748-UTR-H-elongata_contig12765:192..1303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12765 193..1303 -
1622929756.9464085-UTR-H-elongata_contig12765:5014..56001622929756.9464085-UTR-H-elongata_contig12765:5014..5600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12765 5015..5600 -
1691679146.0364695-UTR-H-elongata_contig12765:5014..56001691679146.0364695-UTR-H-elongata_contig12765:5014..5600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12765 5015..5600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.7524428-CDS-H-elongata_contig12765:1303..13901622929756.7524428-CDS-H-elongata_contig12765:1303..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12765 1304..1390 -
1691679146.008861-CDS-H-elongata_contig12765:1303..13901691679146.008861-CDS-H-elongata_contig12765:1303..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12765 1304..1390 -
1622929756.9023478-CDS-H-elongata_contig12765:3573..36841622929756.9023478-CDS-H-elongata_contig12765:3573..3684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12765 3574..3684 -
1691679146.0175774-CDS-H-elongata_contig12765:3573..36841691679146.0175774-CDS-H-elongata_contig12765:3573..3684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12765 3574..3684 -
1622929756.9280734-CDS-H-elongata_contig12765:4882..50141622929756.9280734-CDS-H-elongata_contig12765:4882..5014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12765 4883..5014 -
1691679146.0268412-CDS-H-elongata_contig12765:4882..50141691679146.0268412-CDS-H-elongata_contig12765:4882..5014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12765 4883..5014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12765.2039.1

>prot_H-elongata_contig12765.2039.1 ID=prot_H-elongata_contig12765.2039.1|Name=mRNA_H-elongata_contig12765.2039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MGNSEKVDGVVYMGSGNRIGEAMAGVDVPALLLWGTLDPFCPAEAMEKSA
HKLPKGTEKVIVEGGNHRGFASYAWQPLDWEATISQQEQRRIVVKALCRF
IDQKVSVAT*
back to top

mRNA from alignment at H-elongata_contig12765:193..5600-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12765.2039.1 ID=mRNA_H-elongata_contig12765.2039.1|Name=mRNA_H-elongata_contig12765.2039.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5408bp|location=Sequence derived from alignment at H-elongata_contig12765:193..5600- (Himanthalia elongata Himel1 dioecious)
GGGGGGTAAAAGCAACTCGAATAATATTATTTCATCTATTATCCCTATCC
ATTTTTAGCGATCCGGTGAAGCGATCCGGTTCATAGGCCTCTAACCTTGC
TGTTAATAGTGAGGGCTCGCAGGAAAGCGAGAAAGGGAGTGGGATCCATT
TCTTGTGGACCTCGAGAAGGCGGGATACGGGAGCGTGATACGCACGAGAT
TCGTTAAGGACGGGACGAAAACGTAATATTTTTGGTTTGTTTTGGTGCAC
TCTTCTTCTAATCTAAAAAGTATTATCTTTCATCTTTGAGCAATGTCGAT
ATATTGGAACTCTCGTCTCATATATCTTTTCTTTTCTTTTCTCGCACCAA
AAAAAAAGGTACAAAAGCTACATCCCCCCAAAAGGTACGATAAGAGGTCA
CATGCTTTCGCTTGCATAGTATATACTGAAAATAGTACGCAGAGAAAATA
TGCCGTGTTACTCTTGTTATATTTACAGTAATCAAATCATGCCGTAATTA
TCCCCGGCAGCCCCACTCGCAAATTACACACGCTCTAACCGTCAGCTCAA
ACGACGCCTGACGAACAACGAACAACATAGTTCTACATGGGTAACTCGGA
GAAAGTGGATGGCGTGGTGTACATGGGGAGTGGCAACAGGATCGGGGAGG
CCATGGCGGGGGTTGACGTACCGGCGCTGCTCCTGTGGGGAACTCTCGAT
CCTTTCTGTCCGGCAGAGGTTAGTAGGGAGGGGACGGGAGAAAGGGGAAA
TAGGGCGTGGGAAGAGGAGGAGGATTTCGAAGCGGTATATCACGCCTCCG
ATACTATCTTTGACTGCATCGCACATGTGTGGTGATATCGCTCATATCCA
CTCTTACCAATAATGGGTGTGGGAAAAGAGAGGCGCACAATAATTGGTCC
ATGGAGTTACCTGAATAGGGTGTACCCGTTAATCAAGCTACCTTGAAGAC
TGCTGGCTCAGTGCCGGCGGACTCTCGACAGTAAACGCCATCGGTACTAG
CAATTGGGTGACCTGGTGAAATTGGGATTGGCCCGATGGCGGTTGACGGC
AGAGATGGACGCCGTCGTGGAAAACGAGATGATCGAGAGGATCCCGGGAG
TACGCACCAGATTCAGCCTTGGTTAAGAGAATGAGCAGGCTGACGCGAGA
CGAGATTGCCAAATCCGTCTCGCGAGAACACATTTTCAGGCGCGAACGGG
GACAGAGAAAAATCATTTTCGCTGTTCAATTGACCACAAGCAGGAGGGAG
GCAACCAAATCCGCTTGACCCTTACTTTGCTATATATGATGACGTCATGA
CCACATCCACACACGCACACACATCGTATAGTATATAGTATAGTATAGTA
TAATATAGTATAGTATAGTACAGTATAGTATAGTATAGTAGTATAGTACA
GCATGCTGCAGTATATTGCATTATATAGGACATCATATTTTTGTATAGTA
TAGAATGTGTGTGGTCATCCATCACGTACGTATAACATAGTATGGAACAA
CTCTTGTAGAACAATAGCTTGGCTTACTTCTTCAACGATGCGCGATGAAG
GGCGGAGCGAGATCTAGCGGCTTACGCACAGAAATCGACCTTTGGTAAGG
CTGTCAACAAAGACCATTTCACGATTCATCGACCTCCTCGTTGCATAGGG
TTTTCATTAAAAAACGTATCTTATGAACTCATTCCAACCCTCCGAACACA
TCCACGCATTCCTCGCACCATGAGAGGTACAGTTCAGGGGACCAACCATC
GTCAGGTTCGAATGTTGTGGATTGTGGAAGGCACCGTTCATTTCATCATC
GATACGAATTCATGACGTCATTGCCTCCATCTTAACATCATCGTGATGTC
ATCGTTCACACCTTAACGCCATCGTGATGTCATCATCTAACGGTCAAGAT
TCATTCGCTACCTCAGGCAATGGAGAAGTCCGCCCACAAGCTACCCAAGG
GCACGGAAAAGGTCATTGTCGAAGGAGGAAACCATCGCGGCTTCGCGTCC
TATGCTTGGCAGCCGCTAGACTGGGAGGTGAGACTTGGGTGCAATTGCAG
CCTGCCAGTAAGATCTTGAGGAAGCGATTTCACTTAAACAGGGTCGGCGG
AAATGTTGCCTGCTATCATCTCAAGTTTGTTTTTTTTCGAACTCTGACCC
TCCTGTAATTTACCATTGGGGAACAGGATTAATCACATGTGACGATTTTG
TTCTCAAAGGTAGTAATATACACATTTAAACCTAAAGATAGTTGATCCTC
TGGACTGCACCTCTCACGATGCTCATTGTAAGGCGTGGATGTTTGGAGGG
TTGGAGTTGATATGTTTAAGAGAAATATGCCAAGATCAGCCCACTTTCGT
CGCTCAACGTCAAAGATGCTAGGTGACGACAAGTTGTCAAGTTGTGAAGA
TAGTCAGTCAAGGCCTTTGGCGTCGTCAAGACAAAACGTCCCCCATCCCC
GGAGTAAATAGCGCCTCCTTTTCCCCTTTAGAAACCCTTTATTTCATTAG
GATGGCAAAGGCACACACAGCACAGGTACAGCAGACCACATACGCACACA
GAGAGACACCCAGCAGAGGAGCTTTCAAGTAGCAGCACATAGTACCGTGG
CAGATCACCATGGACCATTGATGACCACCATGGACCATTGATGCCCTTTT
TAAGCGGTGGGAGTAGTACAGGCAAGAAAAGAGCGAATGCCTCGCCCGCT
ACCTCTTACTCGCATACAGAACCGTTGAGCTCATTTGCCATATCGTCAAG
CCGAAAATAATTGGCGATGAGGTTTCAACGATATGGTCAGGCGTTTCCCT
GTCAAGACAGTCTGTCAAGGCCTTTGGTCCTTGGCCGTCAGTCAAGGGGT
AAAAAGTGTGTCATTTAGCATCTTTGCTCAACGTCGATCGCTTAGGATAC
AGCAAGCGGTCGCTGCTGCACTACTGTGCAGTCCGGATCTCAGCCACTGT
ACGTAGCCCCACACACACGTCGGTTAAACCTCTCGTCATATATTGAGGAA
CATATTAGTAATACTAGTTACGGGGTGACACGCAGCCTGCGGTAACACAT
TTACGCCGTCAGTAACTTTATTTTTGCCGTAACTTGGAGCGTCCCCTATC
TCCGGGTGGGAAATCCTCCTAGAATACGATGAAAACCCTTCGTTTCTTTT
TCACACCGTCCCTCGTGCACACATACATTACACACCCTCCCCAGCTCCCC
AGCACATCACCGAGAAGCCGGTTTAGCAAAACTTCTTCCGCACACGTCAG
TGTGCTCTATAGTACAACAGTAGCAGACAACATACAAAATGCTGTACATA
CAAACACACGAACACTCTAGGTTTTGCGCAATGATTCTTTGTTTCTTTGT
TCTTGTGATGATAGTCCGCCAAATGTACGCGACGTTACACATTTAATCGC
TCGATCTGCACACGCATGCCAATATATATTTTCGGTTAAAAACGGATACT
GTGGAAACGCGGGGATGATTCTATTTTCCCCCCTCAGGAGATGCTTCCGT
TTCGTCCCATATTTTGCCGTAACTCGCGTAAGTACTATCAATTCTTGATT
TTACGCGGTTAGGCGTAGGTTTTGGGTCTGATTTGCCGTAACTAGCATCA
CTGAAAAAAATATATACAAACGCACATATGTAATGAGAGATGTGTTATGT
GGTCATGACGTCATCACATATAGCGAAGTAAGGATCAAACGGGTATGGTT
GCCTCCTTCTTGTGGTCAGGTGAACAGGTACGTGCTCCTGGGATCCTTTG
AATCCTCTCGTTTTCCGCGGCGGGGTCCATCTCTACGGTCAACCACCACC
GGGCCAATCCCGATTTCATAAGGTCACGCAATTGTGTGCCGATGTCGTTT
ACCACCGAGAGTATGCCAACACTTAGCCAACAGTCCTTAAGGTAGCTTGA
GGAACGGGTGCAGGGTGCAGCCTATTCAGGTAACCCCATGGACCAATTAT
TGTACGCCTCTCTTTTCCCACACCCACTTTTGATTGATATACTGAACATG
TGCGATAGAGTCACAGACAGTATTGGAGGCGGTTATTTGAGCAACTTACC
ACGAGCGAGTGTGAGGGTGAATGCGTCCGTGTTATTTCTGTGAGCGTATG
TGCATGATTGTGCTCGTAGTGTGGTAGTGCTCTTTGAGCCTTTTGTAACG
GAAACTCCCTGTGTTGCCAATTATTTTTTCCCTCCCTTTTTATCATACGT
GCATGAACAGGCGACCATCTCCCAGCAGGAGCAGCGGCGAATCGTCGTTA
AAGCTCTGTGTCGATTCATTGACCAGAAGGTGTCTGTCGCAACCTGAGCC
ATCGCTCGTCGCGTGCTATCCCTGTTTATAGCAATACAATTGTATCGTGA
CTTTGAACCATACCTTTATCATCTCCTTTTCTCCATAGCTACCTATTATT
AGACAAGCGAGGACTTATCATGGTGCTGAAGACGAGGAGCAGGAGCAGTG
CTTGTTACTAATATTGATTTGCAAGATTAACGGTTTTGCGTAGACCTTTT
ACGTGTGTTGGTTTGTGATCATGACGTCATCACATTATATAGCCTATAGT
ATGGATCAACCGGATTTGGTCGCCAATCCTGCTCGTGATTAGATGGACAG
GGAAAATGAAATTTCCCTGCCCCCGTTCGTGCCTGAAAATTTGGTCTAAC
GAGACGGGTTCGGCTATCCCATCCCGCGTTGGTATCGTGTTTGTTTCATT
TATTTGGTTATAACAGTTGCCGTTATTTATTTCTTCTTGCTCCATGCGTG
TCAGTCGCCTCTTTTAAGTCCTCGTTTAAAAGTAAATAAATCTATTACAC
CTAAATACTTTGTATATACCTGGTGTACGTGTTTTTATAGTATTTGGCGC
TTTCAGGGACGCATTCGTACGACCACGCCGGGAGGTTGGCGGGTGTTGCT
CCGGACCAACCGTAGCGCTTTCTCCGAAGCTTATAGCGAAGAGTCTATTC
GGGCCCAAAGGATATGCGCTTATCGCGAGTCTTCTCTGGTGGGATGCGTC
GGACAAGTAGGCGATTGTCTATCGGACGCCACCTTGGCGGGCGGTGGGGC
AGCACCCTGCATTTCGACCGCGCTCTGAAGCTTACAGGAGGGTTGACGTG
TGTAGAGCCTGTCCAACAACGCCCACCCACTGGAGTGGCGGTAAGGTAGG
GATGTGTTCGAATTCGTGCTGCCCAGTGGAACAGACCGGGTCGCATCGTC
CGCGCGAGTCTGCGCTTGGACGTATCTTTTCTCAGAGGTGAGAGGCGTTT
TGATGCAGCCCCCTCCCCTTCCGTTCCTATTATGTAAACATGGCGGTGGT
GGGAGAGAAGGGTAAGAGGGTGTCGAGCGCACAGGCTGTCGAGTTAATCT
GACGGCGCACCCGTAATCCTGGTGATACAAAATTATAGTTTTAACCCTCG
CGATCCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12765:193..5600-

>mRNA_H-elongata_contig12765.2039.1 ID=mRNA_H-elongata_contig12765.2039.1|Name=mRNA_H-elongata_contig12765.2039.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig12765:193..5600- (Himanthalia elongata Himel1 dioecious)
ATGGGTAACTCGGAGAAAGTGGATGGCGTGGTGTACATGGGGAGTGGCAA
CAGGATCGGGGAGGCCATGGCGGGGGTTGACGTACCGGCGCTGCTCCTGT
GGGGAACTCTCGATCCTTTCTGTCCGGCAGAGATGGGTAACTCGGAGAAA
GTGGATGGCGTGGTGTACATGGGGAGTGGCAACAGGATCGGGGAGGCCAT
GGCGGGGGTTGACGTACCGGCGCTGCTCCTGTGGGGAACTCTCGATCCTT
TCTGTCCGGCAGAGGCAATGGAGAAGTCCGCCCACAAGCTACCCAAGGGC
ACGGAAAAGGTCATTGTCGAAGGAGGAAACCATCGCGGCTTCGCGTCCTA
TGCTTGGCAGCCGCTAGACTGGGAGGCAATGGAGAAGTCCGCCCACAAGC
TACCCAAGGGCACGGAAAAGGTCATTGTCGAAGGAGGAAACCATCGCGGC
TTCGCGTCCTATGCTTGGCAGCCGCTAGACTGGGAGGCGACCATCTCCCA
GCAGGAGCAGCGGCGAATCGTCGTTAAAGCTCTGTGTCGATTCATTGACC
AGAAGGTGTCTGTCGCAACCTGAGCGACCATCTCCCAGCAGGAGCAGCGG
CGAATCGTCGTTAAAGCTCTGTGTCGATTCATTGACCAGAAGGTGTCTGT
CGCAACCTGA
back to top