prot_H-elongata_contig12755.2037.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12755.2037.1
Unique Nameprot_H-elongata_contig12755.2037.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length270
Homology
[Close]
BLAST of mRNA_H-elongata_contig12755.2037.1 vs. uniprot
Match: A0A6H5JJX9_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 7.740e-31
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 0 
Query:   21 RRYPPPRAGY-YVVHSAGES-----PRAVRAEEVSFIIRRVQITALQQESGGEIFYLIQVTINDGYKYYVLRRYHQFDQLRARVAPIVRVVTAPFPPMFGVRASTVGLQRANIEDRK 131
            +RYPPP AGY YVV           PRAVRA E  FII RV + + +   GGE+ + +QVT+NDGYKY VLRRY QFDQLR RV+ ++R  T PFPP   +R+STVGL  A++E+R+
Sbjct:    2 QRYPPPPAGYIYVVQEPQPGQVHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKCSIRSSTVGLGPADLEERR 118
[Close]
BLAST of mRNA_H-elongata_contig12755.2037.1 vs. uniprot
Match: D8LSX2_ECTSI (Similar to intersectin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX2_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.430e-27
Identity = 69/156 (44.23%), Postives = 92/156 (58.97%), Query Frame = 0 
Query:    1 GIIGAVTVGATVAAVVASPRRRYPPPR-AGYYVVHSAGES-------PRAVRAEEVSFIIRRVQITALQQESGGEIFYLIQVTINDGYKYYVLRRYHQFDQLRARVAPIVRVVTAPFPPMFGVRASTVGLQRANIEDRKWGHAADLASITLHRGVN 148
            G++GA+  GA +AAVV            AGY  V    +S       PRAVRA E  FII RV + + +   GGE+ + +Q+T+NDGYKY VLRRY QFDQLR RV+ ++R  T PFPP   +R+STVGL  A++E+R+    A L S+      N
Sbjct:   46 GLVGALATGAAIAAVVGXXXXXXXXXXXAGYIYVVQEPQSGQVGHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQITMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKSSIRSSTVGLGPADLEERRQMLQAWLQSLCTAASAN 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12755.2037.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJX9_9PHAE7.740e-3153.85PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LSX2_ECTSI2.430e-2744.23Similar to intersectin 2 n=1 Tax=Ectocarpus silicu... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036871PX domain superfamilyGENE3D3.30.1520.10coord: 41..132
e-value: 6.1E-6
score: 27.8
IPR036871PX domain superfamilySUPERFAMILY64268PX domaincoord: 55..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12755contigH-elongata_contig12755:3717..5646 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12755.2037.1mRNA_H-elongata_contig12755.2037.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12755 3217..5646 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12755.2037.1 ID=prot_H-elongata_contig12755.2037.1|Name=mRNA_H-elongata_contig12755.2037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
GIIGAVTVGATVAAVVASPRRRYPPPRAGYYVVHSAGESPRAVRAEEVSF
IIRRVQITALQQESGGEIFYLIQVTINDGYKYYVLRRYHQFDQLRARVAP
IVRVVTAPFPPMFGVRASTVGLQRANIEDRKWGHAADLASITLHRGVNQL
PGSPRSHVQLPRDRPQLPSRSDCRPQHGRRYQQRALGGKDSYQKTVPIPA
WHNPTHQPSWSWGSTYIPPRTPAGAGAHNPFLSPPPRFSTRVRDPTYPRS
RSGTRQSPRGAGRGRSNTA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf