mRNA_H-elongata_contig127501.2035.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127501.2035.1
Unique NamemRNA_H-elongata_contig127501.2035.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: D7FRQ9_ECTSI (Dynein light intermediate chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ9_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.710e-45
Identity = 91/180 (50.56%), Postives = 101/180 (56.11%), Query Frame = 1 
Query:    4 NLWETMLRDAMRRSRLPDGTLLLVGSQGCGKSTLLDTI-------SAANARG-----------------------------------------------------FHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCSELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 363
            NLWETMLRDAMRRSRLP  TL+ VG +GCGKS+LLDT        S  N  G                                                     FHPVL+Y+YLDA DP+EQG+ERD+SPPRVSVW CS LEFE LL+TVLRPE+L N   VV VDLSRPWE MDSVEK
Sbjct:   29 NLWETMLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPIAGQAFHPVLSYAYLDAADPAEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEK 208
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A835Z2Q1_9STRA (Dynein light intermediate chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.290e-21
Identity = 55/142 (38.73%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:   10 WETMLRDAMRRSRLPDGTLLLVGSQGCGKSTLLDTISAANAR-----------GFHPVLAYSYLDATDPSEQ---GSERDDSPPRVSVWCCSELEFEGLLQTVLRPEQ-----------LANTTAVVTVDLSRPWEAMDSVE 360
            W+ +LR+A    R PD  ++ VG +G GK+ L++ ++ A  R            FHPVLAY Y +A D + Q   GS   DSPPRVSVW CS+  F  +L  V    Q            A   A+V VDL+RPWEA+ + E
Sbjct:   16 WDALLREAATAERPPDSVIICVGPRGSGKTALVERLTGAAPRKQDATGEEPPPDFHPVLAYDYFEARDAAAQSSSGSAFSDSPPRVSVWSCSDARFVDILTAVTASTQHAPPPPAAAGVAAPALALVAVDLTRPWEAVPAAE 157
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: V9L3Y3_CALMI (Dynein light intermediate chain (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9L3Y3_CALMI)

HSP 1 Score: 71.6 bits (174), Expect = 3.350e-12
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:    1 DNLWETMLRDAMRRSR--LPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 363
            DNLW ++L +   RSR  LP G  +L+ G  G GK+TL+  +           + + YLD  D      E  D   R +VW    +   +GLL+  + PE + +T  ++ +D+SRPW AMDS++K
Sbjct:   36 DNLWSSILSEVSTRSRSKLPAGKNILVTGEDGSGKTTLIAKLQGVEDYKKGRGMEFLYLDVHD------EDIDDHTRCNVWILDGDTYHKGLLKFAITPENVKDTLLILVMDMSRPWIAMDSLQK 154
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A4W3KFP6_CALMI (Dynein light intermediate chain n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3KFP6_CALMI)

HSP 1 Score: 71.6 bits (174), Expect = 3.930e-12
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:    1 DNLWETMLRDAMRRSR--LPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 363
            DNLW ++L +   RSR  LP G  +L+ G  G GK+TL+  +           + + YLD  D      E  D   R +VW    +   +GLL+  + PE + +T  ++ +D+SRPW AMDS++K
Sbjct:   36 DNLWSSILSEVSTRSRSKLPAGKNILVTGEDGSGKTTLIAKLQGVEDYKKGRGMEFLYLDVHD------EDIDDHTRCNVWILDGDTYHKGLLKFAITPENVKDTLLILVMDMSRPWIAMDSLQK 154
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A4W3JPH2_CALMI (Dynein light intermediate chain n=4 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JPH2_CALMI)

HSP 1 Score: 71.6 bits (174), Expect = 3.950e-12
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:    1 DNLWETMLRDAMRRSR--LPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 363
            DNLW ++L +   RSR  LP G  +L+ G  G GK+TL+  +           + + YLD  D      E  D   R +VW    +   +GLL+  + PE + +T  ++ +D+SRPW AMDS++K
Sbjct:   36 DNLWSSILSEVSTRSRSKLPAGKNILVTGEDGSGKTTLIAKLQGVEDYKKGRGMEFLYLDVHD------EDIDDHTRCNVWILDGDTYHKGLLKFAITPENVKDTLLILVMDMSRPWIAMDSLQK 154
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A3B3QRV2_9TELE (Dynein light intermediate chain n=3 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QRV2_9TELE)

HSP 1 Score: 71.6 bits (174), Expect = 3.980e-12
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:    4 NLWETMLRDAMRRS--RLPDGTLLLV-GSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 363
            NLW ++L D   RS  +LP G  +LV G  G GK+TL+  +  A        L Y YL+  D      +RDD   R +VW    +L  +GLL+     E L +T A+  VD+SRPW  M+S++K
Sbjct:   65 NLWHSILSDVSTRSSSKLPSGKNILVFGEDGSGKTTLMAKLQGAEHNKKGRGLEYLYLNVHD-----EDRDDLT-RCNVWILDGDLYHKGLLKFAASAESLRDTLAMFVVDMSRPWNIMESLQK 182
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A3Q2UA86_CHICK (Dynein light intermediate chain n=1 Tax=Gallus gallus TaxID=9031 RepID=A0A3Q2UA86_CHICK)

HSP 1 Score: 68.9 bits (167), Expect = 4.920e-12
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 1 
Query:   40 RSRLPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 363
            RS+LP G T+L++G  G GK+TL+  +  A        L Y YL+  D      +RDD   R +VW    ++  +GLL+  +  E L +T  +  VD+SRPW AM+S+EK
Sbjct:   21 RSKLPSGKTILVLGDNGSGKTTLMAKLQGAEHGQKGRGLEYLYLNVHD-----EDRDDHT-RCNVWILDGDIYSKGLLKFAVSAESLQHTIVIFVVDMSRPWTAMESLEK 124
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A7M4EAE4_CROPO (Dynein light intermediate chain n=22 Tax=Archelosauria TaxID=1329799 RepID=A0A7M4EAE4_CROPO)

HSP 1 Score: 70.5 bits (171), Expect = 9.980e-12
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:    4 NLWETMLRDAMRRSR--LPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 363
            NLW  +L +   RSR  LP G ++LL+G  G GK++L+  I           + Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:   31 NLWSCILSEVSTRSRSKLPSGKSVLLLGEDGAGKTSLIGKIQGIEDYKKGRGMEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAMEASSLKDTLVMLVVDMSRPWTALDSLQK 148
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A7M4FTT0_CROPO (Dynein light intermediate chain n=9 Tax=Archosauria TaxID=8492 RepID=A0A7M4FTT0_CROPO)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-11
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:    4 NLWETMLRDAMRRSR--LPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 363
            NLW  +L +   RSR  LP G ++LL+G  G GK++L+  I           + Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:   31 NLWSCILSEVSTRSRSKLPSGKSVLLLGEDGAGKTSLIGKIQGIEDYKKGRGMEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAMEASSLKDTLVMLVVDMSRPWTALDSLQK 148
[Close]
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: H0YZW7_TAEGU (Dynein light intermediate chain n=98 Tax=Sauria TaxID=32561 RepID=H0YZW7_TAEGU)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-11
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:    4 NLWETMLRDAMRRSR--LPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 363
            NLW  +L +   RSR  LP G  +LL+G  G GK++L+  I           + Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:   54 NLWSCILSEVSTRSRSKLPSGKNVLLLGEDGAGKTSLIGKIQGIEEYKKGRGMEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAMEASSLKDTLVMLVVDMSRPWTALDSLQK 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ9_ECTSI3.710e-4550.56Dynein light intermediate chain n=2 Tax=Ectocarpus... [more]
A0A835Z2Q1_9STRA2.290e-2138.73Dynein light intermediate chain n=1 Tax=Tribonema ... [more]
V9L3Y3_CALMI3.350e-1234.40Dynein light intermediate chain (Fragment) n=1 Tax... [more]
A0A4W3KFP6_CALMI3.930e-1234.40Dynein light intermediate chain n=1 Tax=Callorhinc... [more]
A0A4W3JPH2_CALMI3.950e-1234.40Dynein light intermediate chain n=4 Tax=Callorhinc... [more]
A0A3B3QRV2_9TELE3.980e-1237.90Dynein light intermediate chain n=3 Tax=Paramormyr... [more]
A0A3Q2UA86_CHICK4.920e-1238.18Dynein light intermediate chain n=1 Tax=Gallus gal... [more]
A0A7M4EAE4_CROPO9.980e-1235.48Dynein light intermediate chain n=22 Tax=Archelosa... [more]
A0A7M4FTT0_CROPO1.010e-1135.48Dynein light intermediate chain n=9 Tax=Archosauri... [more]
H0YZW7_TAEGU1.010e-1135.48Dynein light intermediate chain n=98 Tax=Sauria Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127501contigH-elongata_contig127501:280..822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue4.5e-34
Seed eggNOG ortholog2880.D7FRQ9
Preferred nameDYNC1LI1
KEGG koko:K03685,ko:K10416
KEGG Pathwayko03008,ko04145,ko04962,ko05132,ko05205,map03008,map04145,map04962,map05132,map05205
GOsGO:0000003,GO:0000166,GO:0000226,GO:0000278,GO:0000775,GO:0000776,GO:0000902,GO:0000904,GO:0000922,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0003006,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005868,GO:0005874,GO:0005875,GO:0005886,GO:0006403,GO:0006810,GO:0006887,GO:0006888,GO:0006928,GO:0006955,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0007088,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007399,GO:0007409,GO:0008088,GO:0008090,GO:0008150,GO:0009653,GO:0009719,GO:0009987,GO:0010033,GO:0010564,GO:0010769,GO:0010965,GO:0010970,GO:0010975,GO:0012505,GO:0012506,GO:0015630,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0016358,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030030,GO:0030071,GO:0030141,GO:0030154,GO:0030182,GO:0030286,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031175,GO:0031344,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032886,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0035371,GO:0036094,GO:0036230,GO:0042119,GO:0042221,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045321,GO:0045504,GO:0045595,GO:0045664,GO:0045787,GO:0045931,GO:0046605,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048468,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048814,GO:0048856,GO:0048858,GO:0048869,GO:0050657,GO:0050658,GO:0050767,GO:0050773,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051259,GO:0051260,GO:0051493,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051960,GO:0051983,GO:0060284,GO:0061564,GO:0061842,GO:0065003,GO:0065007,GO:0070507,GO:0070820,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0097159,GO:0097367,GO:0097458,GO:0097708,GO:0098588,GO:0098687,GO:0098805,GO:0098930,GO:0099080,GO:0099081,GO:0099111,GO:0099503,GO:0099512,GO:0099513,GO:0101002,GO:0101003,GO:0120025,GO:0120035,GO:0120036,GO:0120039,GO:1901265,GO:1901363,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1902494,GO:1902850,GO:1903047,GO:1903504,GO:1905818,GO:1990089,GO:1990090,GO:1990752,GO:2000026
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG3905@1,KOG3905@2759
EC3.1.26.3
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03019,ko03036,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127501.2035.1prot_H-elongata_contig127501.2035.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127501 280..804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.3477702-CDS-H-elongata_contig127501:279..5291622929756.3477702-CDS-H-elongata_contig127501:279..529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127501 280..529 -
1691679145.8554947-CDS-H-elongata_contig127501:279..5291691679145.8554947-CDS-H-elongata_contig127501:279..529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127501 280..529 -
1622929756.3621793-CDS-H-elongata_contig127501:709..8041622929756.3621793-CDS-H-elongata_contig127501:709..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127501 710..804 -
1691679145.8677099-CDS-H-elongata_contig127501:709..8041691679145.8677099-CDS-H-elongata_contig127501:709..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127501 710..804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.386672-UTR-H-elongata_contig127501:804..8221622929756.386672-UTR-H-elongata_contig127501:804..822Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127501 805..822 -
1691679145.883132-UTR-H-elongata_contig127501:804..8221691679145.883132-UTR-H-elongata_contig127501:804..822Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127501 805..822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127501.2035.1

>prot_H-elongata_contig127501.2035.1 ID=prot_H-elongata_contig127501.2035.1|Name=mRNA_H-elongata_contig127501.2035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MLRDAMRRSRLPDGTLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYL
DATDPSEQGSERDDSPPRVSVWCCSELEFEGLLQTVLRPEQLANTTAVVT
VDLSRPWEAMDSVEK
back to top

mRNA from alignment at H-elongata_contig127501:280..822-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127501.2035.1 ID=mRNA_H-elongata_contig127501.2035.1|Name=mRNA_H-elongata_contig127501.2035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig127501:280..822- (Himanthalia elongata Himel1 dioecious)
GACAACCTCTGGGAAACCATGCTCCGAGACGCCATGCGGAGGAGCAGGCT
GCCAGACGGGACCCTCTTGCTCGTCGGCTCCCAGGGATGTGGGAAATCCA
CACTGCTCGACACGTTCTTGGAAGGATCTGCAGCGAGTGCTAACCCTTCT
GGAGGGGCAGCCGCGGCTGCCGCAGCCCCCGCTGTCGTTGCGCCGCTGGC
AGAAAAGGGGTTGGAAGGGACTCCCGCCGCCGCCGTAGCAGGAGCTGCCG
CCGCAGCTGCCGGCGGCGGCAGCGCGACTGCTGGCGGTGACAGCATCAGT
GCGGCAAACGCACGAGGATTCCACCCCGTGCTGGCCTACTCGTACCTGGA
CGCGACGGATCCGTCGGAGCAGGGATCGGAGCGTGATGACTCCCCGCCGC
GTGTGAGCGTCTGGTGCTGCAGCGAGCTGGAGTTTGAGGGCCTCCTCCAG
ACAGTATTGCGGCCGGAGCAGCTCGCGAACACGACGGCGGTCGTTACCGT
GGACTTATCCCGACCGTGGGAGGCGATGGACTCTGTGGAGAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127501:280..822-

>mRNA_H-elongata_contig127501.2035.1 ID=mRNA_H-elongata_contig127501.2035.1|Name=mRNA_H-elongata_contig127501.2035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig127501:280..822- (Himanthalia elongata Himel1 dioecious)
ATGCTCCGAGACGCCATGCGGAGGAGCAGGCTGCCAGACGGGACCCTCTT
GCTCGTCGGCTCCCAGGGATGTGGGAAATCCACACTGCTCGACACATGCT
CCGAGACGCCATGCGGAGGAGCAGGCTGCCAGACGGGACCCTCTTGCTCG
TCGGCTCCCAGGGATGTGGGAAATCCACACTGCTCGACACCATCAGTGCG
GCAAACGCACGAGGATTCCACCCCGTGCTGGCCTACTCGTACCTGGACGC
GACGGATCCGTCGGAGCAGGGATCGGAGCGTGATGACTCCCCGCCGCGTG
TGAGCGTCTGGTGCTGCAGCGAGCTGGAGTTTGAGGGCCTCCTCCAGACA
GTATTGCGGCCGGAGCAGCTCGCGAACACGACGGCGGTCGTTACCGTGGA
CTTATCCCGACCGTGGGAGGCGATGGACTCTGTGGAGAAGCATCAGTGCG
GCAAACGCACGAGGATTCCACCCCGTGCTGGCCTACTCGTACCTGGACGC
GACGGATCCGTCGGAGCAGGGATCGGAGCGTGATGACTCCCCGCCGCGTG
TGAGCGTCTGGTGCTGCAGCGAGCTGGAGTTTGAGGGCCTCCTCCAGACA
GTATTGCGGCCGGAGCAGCTCGCGAACACGACGGCGGTCGTTACCGTGGA
CTTATCCCGACCGTGGGAGGCGATGGACTCTGTGGAGAAG
back to top