prot_H-elongata_contig127497.2034.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig127497.2034.1
Unique Nameprot_H-elongata_contig127497.2034.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length93
Homology
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: D8LMQ2_ECTSI (Rab8E, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ2_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 8.270e-42
Identity = 70/88 (79.55%), Postives = 84/88 (95.45%), Query Frame = 0
Query:    1 QIGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 88
            ++ T+GVDFK+KT+V++DEEV +QVWDTAGQQ+FHKIT+AYYRGSHGIVLVYD+SDP+TLDN AYWM+SIR+ AGSNRVQICLVGNKV
Sbjct:   82 KVQTLGVDFKLKTIVLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDMSDPKTLDNTAYWMRSIRDTAGSNRVQICLVGNKV 169          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A6H5KJK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK4_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 6.690e-41
Identity = 68/88 (77.27%), Postives = 83/88 (94.32%), Query Frame = 0
Query:    1 QIGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 88
            ++ T+GVDFK+KT+ ++DEEV +QVWDTAGQQ+FHKIT+AYYRGSHGIVLVYD+SDP+TLDN AYWM+SIR+ AGSNRVQICL+GNKV
Sbjct:  972 KVQTLGVDFKLKTIFLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDISDPKTLDNTAYWMRSIRDTAGSNRVQICLIGNKV 1059          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A835YLY5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 9.800e-34
Identity = 58/87 (66.67%), Postives = 74/87 (85.06%), Query Frame = 0
Query:    2 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 88
            +GTVGVDFK++T+ +  E V+VQVWDTAGQ+RFHKITRAYYRGSHGI+L YDV +P TL+NI+YW+ +I++NA S  V  CLVGNK+
Sbjct:   32 VGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSG-VCTCLVGNKM 117          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: H6WB87_VAULI (Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB87_VAULI)

HSP 1 Score: 122 bits (307), Expect = 5.440e-31
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    2 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 87
            +GTVGVDFK++T+ +  E++ VQVWDTAGQ+RFHKITRAYY G  GI+L YDV +P TL+NI+YW+K+IR+NA S  V+ CLVGNK
Sbjct:  285 VGTVGVDFKIRTMEVLGEKITVQVWDTAGQERFHKITRAYYHGCQGILLAYDVGEPGTLENISYWIKNIRDNA-SKDVRTCLVGNK 369          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A6J0TE10_9SAUR (ras-related protein Rab-10-like isoform X1 n=2 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0TE10_9SAUR)

HSP 1 Score: 107 bits (268), Expect = 2.630e-27
Identity = 47/86 (54.65%), Postives = 67/86 (77.91%), Query Frame = 0
Query:    2 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 87
            + TVG+DFKVKT+ ++D  + +Q+WDTAGQ+RFH  T +++RG+HG VLVYD+++PE+   IA+WMK I E A  N V+I L+GNK
Sbjct:   49 LATVGIDFKVKTISLNDTTMKLQIWDTAGQERFHTFTTSFFRGAHGFVLVYDITNPESFQGIAHWMKDIHEKAEEN-VEIILLGNK 133          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: UPI000719DAEE (ras-related protein Rab-10-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DAEE)

HSP 1 Score: 107 bits (266), Expect = 4.200e-27
Identity = 45/86 (52.33%), Postives = 70/86 (81.40%), Query Frame = 0
Query:    2 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 87
            I T+G+DFK+KT+ +H +++ +Q+WDTAGQ+RFH IT +YYRG+ GI+LVYD++ P+T DNIA W+++I E+A  + V+  ++GNK
Sbjct:   39 ISTIGIDFKIKTIELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITSPKTFDNIAKWLRNIDEHANED-VEKMILGNK 123          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A8K1CFC2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFC2_PYTOL)

HSP 1 Score: 112 bits (280), Expect = 5.060e-27
Identity = 46/87 (52.87%), Postives = 68/87 (78.16%), Query Frame = 0
Query:    2 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 88
            + T GVDFK++ + + DEE+ +Q+WDTAGQ+RFH+IT  YY+G++GIVLVYDV+D ++ DN+ YWM +IR+ A  +   + LVGNK+
Sbjct:  384 LATAGVDFKLRNIALGDEEIALQIWDTAGQERFHRITATYYKGANGIVLVYDVTDKKSFDNVGYWMNNIRQYASPHMPAMLLVGNKI 470          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: E4X453_OIKDI (Uncharacterized protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4X453_OIKDI)

HSP 1 Score: 107 bits (266), Expect = 5.920e-27
Identity = 46/86 (53.49%), Postives = 70/86 (81.40%), Query Frame = 0
Query:    2 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 87
            I T+G+DFK+KTV +  +++ +Q+WDTAGQ+RFH IT +YYRG++GI+LVYD++ P+T DNI+ W+++I E+A S  V+  L+GNK
Sbjct:   46 ISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGANGILLVYDITQPKTFDNISKWLRNINEHA-SEDVERMLIGNK 130          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: C3ZRX8_BRAFL (Uncharacterized protein n=6 Tax=Chordata TaxID=7711 RepID=C3ZRX8_BRAFL)

HSP 1 Score: 106 bits (265), Expect = 6.560e-27
Identity = 45/86 (52.33%), Postives = 71/86 (82.56%), Query Frame = 0
Query:    2 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 87
            I T+G+DFK+KTV +H +++ +Q+WDTAGQ+RFH IT +YYRG+ GI+LVYD+++P++ DNI+ W+++I E+A  + V+  L+GNK
Sbjct:   39 ISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNPKSFDNISKWLRNIDEHANED-VERMLIGNK 123          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A7M4E314_CROPO (RAB13, member RAS oncogene family n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A7M4E314_CROPO)

HSP 1 Score: 105 bits (263), Expect = 8.570e-27
Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 0
Query:    2 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 87
            I T+G+DFK++TV I  +++ +QVWDTAGQ+RF  IT AYYRG+ GI+LVYD++D ++ +NI  WMKSIRENA +  V+  L+GNK
Sbjct:   38 ISTIGIDFKIRTVEIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIRENASAG-VERLLLGNK 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ2_ECTSI8.270e-4279.55Rab8E, RAB family GTPase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KJK4_9PHAE6.690e-4177.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLY5_9STRA9.800e-3466.67P-loop containing nucleoside triphosphate hydrolas... [more]
H6WB87_VAULI5.440e-3165.12Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A6J0TE10_9SAUR2.630e-2754.65ras-related protein Rab-10-like isoform X1 n=2 Tax... [more]
UPI000719DAEE4.200e-2752.33ras-related protein Rab-10-like n=1 Tax=Priapulus ... [more]
A0A8K1CFC2_PYTOL5.060e-2752.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
E4X453_OIKDI5.920e-2753.49Uncharacterized protein n=2 Tax=Oikopleura dioica ... [more]
C3ZRX8_BRAFL6.560e-2752.33Uncharacterized protein n=6 Tax=Chordata TaxID=771... [more]
A0A7M4E314_CROPO8.570e-2756.98RAB13, member RAS oncogene family n=4 Tax=Crocodyl... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 14..36
score: 39.02
coord: 77..90
score: 37.93
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 1..92
e-value: 6.1E-10
score: 14.4
NoneNo IPR availableGENE3D3.40.50.300coord: 1..89
e-value: 7.4E-32
score: 112.1
NoneNo IPR availablePANTHERPTHR24073:SF10coord: 2..88
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 2..88
NoneNo IPR availablePROSITEPS51419RABcoord: 1..92
score: 18.055
IPR001806Small GTPasePFAMPF00071Rascoord: 3..88
e-value: 1.4E-27
score: 96.3
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 4..88
e-value: 1.2E-12
score: 45.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127497contigH-elongata_contig127497:519..1424 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127497.2034.1mRNA_H-elongata_contig127497.2034.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig127497 519..1424 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig127497.2034.1 ID=prot_H-elongata_contig127497.2034.1|Name=mRNA_H-elongata_contig127497.2034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
QIGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVL
VYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKVPPID*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase