mRNA_H-elongata_contig127497.2034.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127497.2034.1
Unique NamemRNA_H-elongata_contig127497.2034.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: D8LMQ2_ECTSI (Rab8E, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ2_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 8.270e-42
Identity = 70/88 (79.55%), Postives = 84/88 (95.45%), Query Frame = 1
Query:    1 QIGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 264
            ++ T+GVDFK+KT+V++DEEV +QVWDTAGQQ+FHKIT+AYYRGSHGIVLVYD+SDP+TLDN AYWM+SIR+ AGSNRVQICLVGNKV
Sbjct:   82 KVQTLGVDFKLKTIVLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDMSDPKTLDNTAYWMRSIRDTAGSNRVQICLVGNKV 169          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A6H5KJK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK4_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 6.690e-41
Identity = 68/88 (77.27%), Postives = 83/88 (94.32%), Query Frame = 1
Query:    1 QIGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 264
            ++ T+GVDFK+KT+ ++DEEV +QVWDTAGQQ+FHKIT+AYYRGSHGIVLVYD+SDP+TLDN AYWM+SIR+ AGSNRVQICL+GNKV
Sbjct:  972 KVQTLGVDFKLKTIFLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDISDPKTLDNTAYWMRSIRDTAGSNRVQICLIGNKV 1059          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A835YLY5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 9.800e-34
Identity = 58/87 (66.67%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 264
            +GTVGVDFK++T+ +  E V+VQVWDTAGQ+RFHKITRAYYRGSHGI+L YDV +P TL+NI+YW+ +I++NA S  V  CLVGNK+
Sbjct:   32 VGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSG-VCTCLVGNKM 117          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: H6WB87_VAULI (Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB87_VAULI)

HSP 1 Score: 122 bits (307), Expect = 5.440e-31
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
            +GTVGVDFK++T+ +  E++ VQVWDTAGQ+RFHKITRAYY G  GI+L YDV +P TL+NI+YW+K+IR+NA S  V+ CLVGNK
Sbjct:  285 VGTVGVDFKIRTMEVLGEKITVQVWDTAGQERFHKITRAYYHGCQGILLAYDVGEPGTLENISYWIKNIRDNA-SKDVRTCLVGNK 369          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A6J0TE10_9SAUR (ras-related protein Rab-10-like isoform X1 n=2 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0TE10_9SAUR)

HSP 1 Score: 107 bits (268), Expect = 2.630e-27
Identity = 47/86 (54.65%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
            + TVG+DFKVKT+ ++D  + +Q+WDTAGQ+RFH  T +++RG+HG VLVYD+++PE+   IA+WMK I E A  N V+I L+GNK
Sbjct:   49 LATVGIDFKVKTISLNDTTMKLQIWDTAGQERFHTFTTSFFRGAHGFVLVYDITNPESFQGIAHWMKDIHEKAEEN-VEIILLGNK 133          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A8K1CFC2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFC2_PYTOL)

HSP 1 Score: 112 bits (280), Expect = 5.060e-27
Identity = 46/87 (52.87%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKV 264
            + T GVDFK++ + + DEE+ +Q+WDTAGQ+RFH+IT  YY+G++GIVLVYDV+D ++ DN+ YWM +IR+ A  +   + LVGNK+
Sbjct:  384 LATAGVDFKLRNIALGDEEIALQIWDTAGQERFHRITATYYKGANGIVLVYDVTDKKSFDNVGYWMNNIRQYASPHMPAMLLVGNKI 470          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: E4X453_OIKDI (Uncharacterized protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4X453_OIKDI)

HSP 1 Score: 107 bits (266), Expect = 5.920e-27
Identity = 46/86 (53.49%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
            I T+G+DFK+KTV +  +++ +Q+WDTAGQ+RFH IT +YYRG++GI+LVYD++ P+T DNI+ W+++I E+A S  V+  L+GNK
Sbjct:   46 ISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGANGILLVYDITQPKTFDNISKWLRNINEHA-SEDVERMLIGNK 130          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: C3ZRX8_BRAFL (Uncharacterized protein n=6 Tax=Chordata TaxID=7711 RepID=C3ZRX8_BRAFL)

HSP 1 Score: 106 bits (265), Expect = 6.560e-27
Identity = 45/86 (52.33%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
            I T+G+DFK+KTV +H +++ +Q+WDTAGQ+RFH IT +YYRG+ GI+LVYD+++P++ DNI+ W+++I E+A  + V+  L+GNK
Sbjct:   39 ISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNPKSFDNISKWLRNIDEHANED-VERMLIGNK 123          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A7M4E314_CROPO (RAB13, member RAS oncogene family n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A7M4E314_CROPO)

HSP 1 Score: 105 bits (263), Expect = 8.570e-27
Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
            I T+G+DFK++TV I  +++ +QVWDTAGQ+RF  IT AYYRG+ GI+LVYD++D ++ +NI  WMKSIRENA +  V+  L+GNK
Sbjct:   38 ISTIGIDFKIRTVEIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIRENASAG-VERLLLGNK 122          
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Match: A0A1J4KX29_9EUKA (Ras-related protein RIC1 n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KX29_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 9.870e-27
Identity = 47/86 (54.65%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    4 IGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVLVYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNK 261
            I T+GVDFKVKT+ +H++ + +QVWDTAGQ+RF  IT +YYRGS+GI++VYDV+D  + D+++YW+K I + A  N  ++ LVGNK
Sbjct:   14 ISTIGVDFKVKTIEMHEKTIKLQVWDTAGQERFRNITSSYYRGSNGIIIVYDVTDRSSFDHVSYWLKEIDQLAAENVCRM-LVGNK 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127497.2034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ2_ECTSI8.270e-4279.55Rab8E, RAB family GTPase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KJK4_9PHAE6.690e-4177.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLY5_9STRA9.800e-3466.67P-loop containing nucleoside triphosphate hydrolas... [more]
H6WB87_VAULI5.440e-3165.12Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A6J0TE10_9SAUR2.630e-2754.65ras-related protein Rab-10-like isoform X1 n=2 Tax... [more]
A0A8K1CFC2_PYTOL5.060e-2752.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
E4X453_OIKDI5.920e-2753.49Uncharacterized protein n=2 Tax=Oikopleura dioica ... [more]
C3ZRX8_BRAFL6.560e-2752.33Uncharacterized protein n=6 Tax=Chordata TaxID=771... [more]
A0A7M4E314_CROPO8.570e-2756.98RAB13, member RAS oncogene family n=4 Tax=Crocodyl... [more]
A0A1J4KX29_9EUKA9.870e-2754.65Ras-related protein RIC1 n=1 Tax=Tritrichomonas fo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127497contigH-elongata_contig127497:519..1424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue5.6e-35
Seed eggNOG ortholog2880.D8LMQ2
KEGG koko:K07901,ko:K07903,ko:K07976
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0078@1,KOG0078@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.2789614-CDS-H-elongata_contig127497:518..7041622929756.2789614-CDS-H-elongata_contig127497:518..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127497 519..704 -
1691679145.8336492-CDS-H-elongata_contig127497:518..7041691679145.8336492-CDS-H-elongata_contig127497:518..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127497 519..704 -
1622929756.2928002-CDS-H-elongata_contig127497:1331..14241622929756.2928002-CDS-H-elongata_contig127497:1331..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127497 1332..1424 -
1691679145.8452926-CDS-H-elongata_contig127497:1331..14241691679145.8452926-CDS-H-elongata_contig127497:1331..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127497 1332..1424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127497.2034.1prot_H-elongata_contig127497.2034.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127497 519..1424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127497.2034.1

>prot_H-elongata_contig127497.2034.1 ID=prot_H-elongata_contig127497.2034.1|Name=mRNA_H-elongata_contig127497.2034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
QIGTVGVDFKVKTVVIHDEEVVVQVWDTAGQQRFHKITRAYYRGSHGIVL
VYDVSDPETLDNIAYWMKSIRENAGSNRVQICLVGNKVPPID*
back to top

mRNA from alignment at H-elongata_contig127497:519..1424-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127497.2034.1 ID=mRNA_H-elongata_contig127497.2034.1|Name=mRNA_H-elongata_contig127497.2034.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=906bp|location=Sequence derived from alignment at H-elongata_contig127497:519..1424- (Himanthalia elongata Himel1 dioecious)
CAGATTGGAACCGTTGGAGTGGACTTTAAGGTGAAAACGGTGGTGATTCA CGATGAAGAAGTGGTGGTGCAAGTCTGGGACACAGCGGGGCAGGTCAGTT TTCGTGATCTTGTTTGGGTATATTATGAGCTTAAAATTATTTTTGTTGGA ACTGTACAATATTATGTCAGTGGACAAAAAAGAAGCTCATTACAATTTAT CACGGCAGGATTTGGAAAATAATTGGTTTTGCGAAAGAAACAATTGAAAA AAAGGAGTGTAATCACAGTTTAGAATCCCTGTCGGTTCTATTAATAGGAG TATCCCGTTTTCCCCGAACCGGAGGGTTGGGGTTTCCAATTGGGAGGGGC ATTTTTCTTCGTATTCTTGGATACCATGATTTCTTGTGCTATCAAACGAA ATCCAACGACAATCGAATCGAAGAGGCGTCGTGCTACCGTTGGCTGACCC TCGCCCCCTCCCCCCTGATCAGCAACGCCTCCACAAGACGAATGTGGTAG CAATGGATCTAGACAGGATAGAGGGGAAAATGTTGCCGTTACCTTTGGAA ACGCAGACAGGAACGACTGGTCTATCGGCGATAGGTCATGTTGAAACAAT GCTCCGTTCACCCTCCCGAGGACGCGTGGCCAATGTCAGTGGCCAAACAG CTAAGGCGTGCAAAACTTGAGTAACCCCCCCCCCCCTCCTTCTTACCCCC CACTTCACTCCTCTCATCAGCAACGCTTCCACAAGATAACCCGGGCGTAT TACAGGGGCTCACACGGCATCGTGCTGGTGTACGATGTTTCTGACCCCGA GACCCTGGATAACATCGCCTACTGGATGAAGAGCATCCGAGAGAACGCTG GGAGCAATCGGGTGCAGATTTGCCTCGTCGGGAATAAGGTACCACCAATC GATTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127497:519..1424-

>mRNA_H-elongata_contig127497.2034.1 ID=mRNA_H-elongata_contig127497.2034.1|Name=mRNA_H-elongata_contig127497.2034.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig127497:519..1424- (Himanthalia elongata Himel1 dioecious)
CAGATTGGAACCGTTGGAGTGGACTTTAAGGTGAAAACGGTGGTGATTCA
CGATGAAGAAGTGGTGGTGCAAGTCTGGGACACAGCGGGGCAGCAGATTG
GAACCGTTGGAGTGGACTTTAAGGTGAAAACGGTGGTGATTCACGATGAA
GAAGTGGTGGTGCAAGTCTGGGACACAGCGGGGCAGCAACGCTTCCACAA
GATAACCCGGGCGTATTACAGGGGCTCACACGGCATCGTGCTGGTGTACG
ATGTTTCTGACCCCGAGACCCTGGATAACATCGCCTACTGGATGAAGAGC
ATCCGAGAGAACGCTGGGAGCAATCGGGTGCAGATTTGCCTCGTCGGGAA
TAAGGTACCACCAATCGATTGACAACGCTTCCACAAGATAACCCGGGCGT
ATTACAGGGGCTCACACGGCATCGTGCTGGTGTACGATGTTTCTGACCCC
GAGACCCTGGATAACATCGCCTACTGGATGAAGAGCATCCGAGAGAACGC
TGGGAGCAATCGGGTGCAGATTTGCCTCGTCGGGAATAAGGTACCACCAA
TCGATTGA
back to top