mRNA_H-elongata_contig12744.2032.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12744.2032.1
Unique NamemRNA_H-elongata_contig12744.2032.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: D8LMX0_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX0_ECTSI)

HSP 1 Score: 616 bits (1588), Expect = 4.020e-208
Identity = 331/458 (72.27%), Postives = 368/458 (80.35%), Query Frame = 1 
Query:    1 KMENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTWRTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSPPNSGDLSNQAESACKTNSLR-----YPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTETRSPSLSPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVLREHGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMMRPVVAQEYRKEAEAMLADTSPALKEATEVELRAVDQTPSFAETTRQKSGAKESVASSR*HEEKALG 1359
            KMENIMLES +EPLVVKLIDFGLSKVFT GDKMRTACGTVYTMAPEVLSG GYTQKADLWSAGVIAF+LLSG+ PFLKDEADLND+ +VE L QARFVFNDP W+T+S G K FVRGLLKK PGFRWTAREALDHCAD WG +FS  +  DLS QAE A   N+        P ++    +   PLSP+   SP  G    G         LSPE+P HASR RLRAV G+IA SM RFADYGE KKAALMVTAFQLD+EEIKQLKDAFLEVDTEGNGAISL+ELRIVLREHGVDG EVDRVFGAVDMD+SG LHYMEFLAAT+EARGYIEEESLK+AFERLDVDSTGFISRDNL+ VLGKTYDN LIDKMLEEGD S SGSI W DFL+MM+PVV QEYR++AEAML DT  A +EA EV  RAVDQTPS+A+T   K+  +++ A++   E+ + G
Sbjct:  275 KMENIMLESQDEPLVVKLIDFGLSKVFTEGDKMRTACGTVYTMAPEVLSGDGYTQKADLWSAGVIAFILLSGTFPFLKDEADLNDQGQVESLRQARFVFNDPAWKTVSAGAKGFVRGLLKKQPGFRWTAREALDHCADTWGLTFSRASFADLSGQAELAAAENAANGIGNTSPIFT---NVSAPPLSPSA--SPRGGGXXXGAPEAP----LSPESPTHASRGRLRAVNGSIAKSMHRFADYGELKKAALMVTAFQLDREEIKQLKDAFLEVDTEGNGAISLEELRIVLREHGVDGAEVDRVFGAVDMDSSGHLHYMEFLAATIEARGYIEEESLKDAFERLDVDSTGFISRDNLKEVLGKTYDNGLIDKMLEEGDSSMSGSIEWEDFLIMMKPVVEQEYRRDAEAMLKDTPVACREAAEVGRRAVDQTPSYAQT---KASGEKTAAATTPQEQASSG 720
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: A0A835ZEJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ0_9STRA)

HSP 1 Score: 339 bits (869), Expect = 9.150e-100
Identity = 188/390 (48.21%), Postives = 248/390 (63.59%), Query Frame = 1 
Query:    4 MENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTWRTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSPPNSGDLSNQAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTETRSPSLSPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVLREHGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMMRPVV 1173
            MENIMLESP++PLVVKLIDFGLS+VF  G+ ++T  GTVYTMAPEVL G+GYTQ++D+WS GVIAF LL G  PFL+DE D ND+  V++L   RF F  P W  ++  G+  V  LL+  PGFRW+A+ AL HC                  Q E A +  +        + G   T  + N   + +    +  +      P  S  T  HAS      V   IATS+R FA YGE KKAALM+TAFQL+KEE+  LK AFLE+DTE NG I+  EL+ VLR+ GVD  E++R+F ++D D SG   YMEFLAAT+EARG+IEE+ L E F+RLDVD++G+ISR NL+ ++G  Y  A++D M++EGD  ++G I    F+ +MRP +
Sbjct:  232 MENIMLESPDDPLVVKLIDFGLSQVFARGEALKTIVGTVYTMAPEVLLGSGYTQQSDIWSVGVIAFYLLCGEYPFLRDEKDFNDEDLVQRLVTGRFEFAHPLWLAVTQEGRDLVINLLRLTPGFRWSAKRALSHC-----------------RQWEDAVQRGAYENMQRLLAVGSDRTAANGNGVGTVSVSGANSSEGAREGRP-WSAATREHASN-----VDVKIATSIRSFAGYGELKKAALMITAFQLEKEELHHLKAAFLEIDTEENGVITYPELQAVLRKQGVDDAEIERLFASMDQDRSGLCSYMEFLAATLEARGFIEEDRLLETFQRLDVDNSGYISRANLKVLMGPLYPEAMLDAMMKEGDPMNTGRISLDSFVRLMRPTL 598
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: A0A6U6K7F4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6K7F4_9STRA)

HSP 1 Score: 265 bits (676), Expect = 9.050e-76
Identity = 153/396 (38.64%), Postives = 232/396 (58.59%), Query Frame = 1 
Query:    1 KMENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTW--RTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSP--PNSGDLSNQAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTETRSPSL-SPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVL----REHGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMM 1161
            K+ENIM E+P+    +KLIDFGLS  FT G+KM  ACGTVYT APE+L G GYT++ D+WS G++A+V+LS + PF+K   ++ND+A+ EQLA A++ F    W  R IS  G+ FV   LKK PG RW A EAL++  D+W P      P+  D+ N   S   ++SL                      + + G  +     +T SP L +P     AS K+   +   +   ++ FAD+ E KK  LM  A+ +DK  + +L+D F  +D++G G I+L +L+  L     +  +D   ++++F  +D+D SG++HY EF+AA VE++G I  E L  AF+RLD    G+IS+D+LR +LG   D  +++KM++E D+  +G I + +FL +M
Sbjct:   69 KLENIMYENPDVTSPIKLIDFGLSNKFTKGEKMLKACGTVYTAAPELLLGTGYTEQTDIWSIGIVAWVMLSQAYPFMKALEEMNDEAKKEQLANAQYTFGKE-WEDRKISKYGREFVANCLKKHPGARWFASEALEYVEDQWIPHLESLAPSLLDVENSCVSNNNSDSL-------------DGSGQGGMETESGGSCNGDSADKTPSPKLCNPLERSVASTKKRTKMSSDVLEGLQNFADHSEIKKTILMTMAYTMDKSSLNELRDLFTVLDSKGTGTITLVDLKNALGKMHSDKHMDDKTIEKLFQGIDVDRSGQIHYNEFIAAVVESQGLITMEHLAVAFDRLDSSGKGYISKDDLRNMLGVDCDENMVNKMMDEADMKKNGQIDYDEFLRLM 450
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: A0A6U6KDL9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6KDL9_9STRA)

HSP 1 Score: 265 bits (676), Expect = 3.030e-74
Identity = 153/396 (38.64%), Postives = 232/396 (58.59%), Query Frame = 1 
Query:    1 KMENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTW--RTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSP--PNSGDLSNQAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTETRSPSL-SPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVL----REHGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMM 1161
            K+ENIM E+P+    +KLIDFGLS  FT G+KM  ACGTVYT APE+L G GYT++ D+WS G++A+V+LS + PF+K   ++ND+A+ EQLA A++ F    W  R IS  G+ FV   LKK PG RW A EAL++  D+W P      P+  D+ N   S   ++SL                      + + G  +     +T SP L +P     AS K+   +   +   ++ FAD+ E KK  LM  A+ +DK  + +L+D F  +D++G G I+L +L+  L     +  +D   ++++F  +D+D SG++HY EF+AA VE++G I  E L  AF+RLD    G+IS+D+LR +LG   D  +++KM++E D+  +G I + +FL +M
Sbjct:  215 KLENIMYENPDVTSPIKLIDFGLSNKFTKGEKMLKACGTVYTAAPELLLGTGYTEQTDIWSIGIVAWVMLSQAYPFMKALEEMNDEAKKEQLANAQYTFGKE-WEDRKISKYGREFVANCLKKHPGARWFASEALEYVEDQWIPHLESLAPSLLDVENSCVSNNNSDSL-------------DGSGQGGMETESGGSCNGDSADKTPSPKLCNPLERSVASTKKRTKMSSDVLEGLQNFADHSEIKKTILMTMAYTMDKSSLNELRDLFTVLDSKGTGTITLVDLKNALGKMHSDKHMDDKTIEKLFQGIDVDRSGQIHYNEFIAAVVESQGLITMEHLAVAFDRLDSSGKGYISKDDLRNMLGVDCDENMVNKMMDEADMKKNGQIDYDEFLRLM 596
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: A0A7S1FMX8_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMX8_9STRA)

HSP 1 Score: 250 bits (638), Expect = 3.530e-69
Identity = 150/393 (38.17%), Postives = 222/393 (56.49%), Query Frame = 1 
Query:    1 KMENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTW--RTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSPPNSGDLSNQAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTETRSPSLSPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVLRE----HGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMM 1161
            KMENIM E   +   +KLIDFGLS+  +       ACGT+YT+APEVL G  YT + D+WSAGV+AFVLLS   PFLK+  DL D+ ++     AR+  +D TW  R IS+  K F+  LL++ PG RWTA+E+L+    +W P     +    + + +     NSL  P +                PSP  G +               E      RKRLR V  ++  +MR+F +YG+FKK  L+  A  +DK  +  LK+ FL +D+E  G I L EL++ L+E    H    ++++++F  +D D SG+++Y+EFLAA  E  G +  +++++AF+RLD D++GFISR+NL +VLG  + + L+  ML+EG     G I +  FL +M
Sbjct:  261 KMENIMYEDTSDDAAIKLIDFGLSQRISKNQSNNRACGTIYTVAPEVLMGHPYTVQNDIWSAGVLAFVLLSEEYPFLKNMKDLADEKKMANFVYARYTMSD-TWKERKISSFAKDFIANLLQREPGMRWTAKESLNFIQTKWIPHLVKRHDDMYAIEEK-----NSLECPEFG--------------MPSPR-GVL---------------ENSTALKRKRLR-VESSLVAAMRQFGEYGQFKKMVLVTLAHTMDKSSLGDLKELFLSIDSENTGTILLSELKLALQEYAYNHNFTDEDIEKIFVGLDHDKSGQVYYIEFLAAVAEIYGLVTMDNVEDAFDRLDCDNSGFISRENLISVLGTDHCDKLVLNMLKEGKADQRGRINYPQFLKLM 616
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: A0A7S1B6N4_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6N4_9STRA)

HSP 1 Score: 249 bits (636), Expect = 4.560e-69
Identity = 150/393 (38.17%), Postives = 222/393 (56.49%), Query Frame = 1 
Query:    1 KMENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTW--RTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSPPNSGDLSNQAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTETRSPSLSPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVLRE----HGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMM 1161
            KMENIM E   +   +KLIDFGLS+  +       ACGT+YT+APEVL G  YT + D+WSAGV+AFVLLS   PFLK+  DL D+ ++     AR+  +D TW  R IS+  K F+  LL++ PG RWTA+E+L+    +W P     +    + + +     NSL  P +                PSP  G +               E      RKRLR V  ++  +MR+F +YG+FKK  L+  A  +DK  +  LK+ FL +D+E  G I L EL++ L+E    H    ++++++F  +D D SG+++Y+EFLAA  E  G +  +++++AF+RLD D++GFISR+NL +VLG  + + L+  ML+EG     G I +  FL +M
Sbjct:  243 KMENIMYEDTSDDAAIKLIDFGLSQRISKDQANNRACGTIYTVAPEVLMGHPYTVQNDIWSAGVLAFVLLSEEYPFLKNMKDLADEKKMANFVYARYTMSD-TWKERKISSFAKDFIANLLQREPGMRWTAKESLNFIQTKWIPHLVKRHDDMYAIEEK-----NSLECPEFG--------------MPSPR-GVL---------------ENSTALKRKRLR-VESSLVAAMRQFGEYGQFKKMVLVTLAHTMDKSSLGDLKELFLSIDSENTGTILLSELKLALQEYAYNHNFTDEDIEKIFVGLDHDKSGQVYYIEFLAAVAEIYGLVTMDNVEDAFDRLDCDNSGFISRENLISVLGTDHCDKLVLNMLKEGKADQRGRINYPQFLKLM 598
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: A0A7S1B6C0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6C0_9STRA)

HSP 1 Score: 241 bits (616), Expect = 4.260e-66
Identity = 145/394 (36.80%), Postives = 216/394 (54.82%), Query Frame = 1 
Query:    1 KMENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTW--RTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSPPNSGDLSNQAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTETRSPSLSPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVLRE----HGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMMR 1164
            KMENIM E   +   +KLIDFGLS+  +       ACGT+YT+APEVL G  YT + D+WSAGV+AFVLLS   PFLK+  DL D+ ++     AR+  +D TW  R IS+  K ++   L++ PG RWT +EALD    +W P +      ++    E+    +S R P                                    PS   E      RK LR     +A +M++F +YG FKK  L+  A  +DK  +  LK+ FL +D+E  G + L +L++ L+E    H +  D++  +F  +D D SG++ Y+EFLAA  E  G +  +++ +AF+RLD D++GFI+++NL +VLG  Y + LI KML+EGD+  +G I +  F+ +M+
Sbjct:  261 KMENIMYEDTSDDAAIKLIDFGLSQRISKNQSNNRACGTIYTVAPEVLMGHPYTVQNDIWSAGVLAFVLLSEEYPFLKNMKDLADEKKMANFVYARYTMSD-TWKERKISSFAKDYIAKSLQRDPGSRWTTKEALDFIQTKWIP-YLMKRHDNMYTSEENRSPPSSERAPVI----------------------------------PSTILENSTALKRKHLRVNSNLVA-AMKQFGEYGRFKKMVLITLAHTMDKRSLGNLKELFLSIDSENTGTLHLRDLKLALQEYASKHDLTDDDIASMFVGLDSDQSGKVRYIEFLAAVAEIYGLVTMDNVADAFDRLDCDNSGFITKENLISVLGTDYCDDLILKMLKEGDLGKTGIIDYSAFVKLMQ 617
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: A0A7S1FNB0_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FNB0_9STRA)

HSP 1 Score: 241 bits (614), Expect = 5.550e-66
Identity = 145/394 (36.80%), Postives = 216/394 (54.82%), Query Frame = 1 
Query:    1 KMENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTW--RTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSPPNSGDLSNQAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTETRSPSLSPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVLRE----HGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMMR 1164
            KMENIM E   +   +KLIDFGLS+  +       ACGT+YT+APEVL G  YT + D+WSAGV+AFVLLS   PFLK+  DL D+ ++     AR+  +D TW  R IS+  K ++   L++ PG RWT +EALD    +W P +      ++    E+    +S R P                                    PS   E      RK LR     +A +M++F +YG FKK  L+  A  +DK  +  LK+ FL +D+E  G + L +L++ L+E    H +  D++  +F  +D D SG++ Y+EFLAA  E  G +  +++ +AF+RLD D++GFI+++NL +VLG  Y + LI KML+EGD+  +G I +  F+ +M+
Sbjct:  243 KMENIMYEDTSDDAAIKLIDFGLSQRISKDQANNRACGTIYTVAPEVLMGHPYTVQNDIWSAGVLAFVLLSEEYPFLKNMKDLADEKKMANFVYARYTMSD-TWKERKISSFAKDYIAKSLQRDPGSRWTTKEALDFIQTKWIP-YLMKRHDNMYTSEENRSPPSSERAPVI----------------------------------PSTILENSTALKRKHLRVNSNLVA-AMKQFGEYGRFKKMVLITLAHTMDKRSLGNLKELFLSIDSENTGTLHLRDLKLALQEYASKHDLTDDDIASMFVGLDSDQSGKVRYIEFLAAVAEIYGLVTMDNVADAFDRLDCDNSGFITKENLISVLGTDYCDDLILKMLKEGDLGKTGIIDYSAFVKLMQ 599
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: A0A6V2IFV9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2IFV9_9STRA)

HSP 1 Score: 238 bits (606), Expect = 9.430e-65
Identity = 145/398 (36.43%), Postives = 227/398 (57.04%), Query Frame = 1 
Query:    1 KMENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGY--TQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTWRTISTGGKA--FVRGLLKKLPGFRWTAREALDHCADEWGP----SFSPPNSGDLSN-QAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDIS-PGKNTETRSPSLSPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVLR----EHGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFL 1152
            K+ENIM  + +    VK IDFGLS  FT G KM  ACGT+YT APE+L  +G+  TQ+ D+WS GV AF+LLS   PFL+D  DL+D A+ + LA A++ F + TW  +    +A  FV+  LKK P  RW A +ALD+  ++W P    +    +  D++  +A++ C                   P++P     P S  +S P K++            + + RKR R +   +   M  FA YGE KK  LM  A+ +DK  + +L++ F  +D++G+G I+L +L+  L+    +  +D + ++ +F  VD+D SG++HY EFLAA VE++G I +E L E F+RLD    G+I++D+L+ VLG  Y+  ++  M++E  V ++G + ++ FL
Sbjct:  215 KLENIMYATRQPDSEVKFIDFGLSNKFTKGHKMIKACGTIYTAAPEILLSSGHSLTQQTDIWSIGVCAFILLSKEYPFLRDRQDLDDPAKRDDLANAKYTFTE-TWDKLRVTEQARFFVQQCLKKEPFHRWDAIDALDYIQNQWIPHLETTLDSSDKNDITELEADADC-------------------PMTPTKADRPESSVLSQPLKHS------------VSSIRKRAR-ISSNMVKGMTSFALYGEVKKTILMTMAYTMDKASVVELRNIFTSIDSDGSGTITLIDLKRALKSMHSDKHLDNETIENLFEGVDVDKSGQIHYNEFLAALVESQGLITQERLAETFDRLDSTGKGYITKDDLKNVLGTNYNEDVVQDMMDEAAVENNGQVDYNAFL 579
[Close]
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Match: A0A7S2R207_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R207_9STRA)

HSP 1 Score: 228 bits (581), Expect = 3.730e-63
Identity = 140/393 (35.62%), Postives = 212/393 (53.94%), Query Frame = 1 
Query:    1 KMENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGAGYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFNDPTW--RTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSPPNSGDLSNQAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTETRSPSLSPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQLDKEEIKQLKDAFLEVDTEGNGAISLDELRIVLRE----HGVDGDEVDRVFGAVDMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLRAVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMM 1161
            K+EN++         VKLIDFGLS  FT G+KM  +CGTVYT APE+L   G T++ D+WS GV+AF+LLS   PFLK   +++D A+++ L  A + F D  W  R I++  + F+   LKK P  R +A +ALD+    W P      S  L   ++   K +    P  S S        S +    P+S   S  K       + S    +  S   L+         M +F  YGE KK  LM  ++ +DK  ++ L + F+ +DT  +G ++L +L+  L        +D   ++ +F  VD+D SG++HY EFLAA VE++G I  E L EAF+R+D D  G+IS+ +L+ +LG+  D  L+++MLEE D+  +G + +  FL +M
Sbjct:   38 KLENVLYTDLSPSATVKLIDFGLSNKFTRGEKMLKSCGTVYTAAPELLLKMGCTEQTDIWSIGVVAFILLSQEYPFLKHTNEIHDPAKLQNLENATYSFGDE-WDHRNITSVARKFISSCLKKNPFMRCSALDALDYIQSPWIPHL---ESLHLERNSDICQKIDYRSSPQDSVSI-TSHADTSNSDIDHPSSNHFSESKKNPLYRSTASTNNRIRMSTDMLQG--------MSKFGQYGELKKTILMTISYDMDKSSLQGLSELFIALDTSQDGTLTLLDLKRALERMKTGRHLDNYGIEEIFKGVDVDASGQIHYNEFLAAVVESQGLITMEHLAEAFDRIDNDGKGYISKGDLKQLLGQECDEGLVNRMLEEADLDPNGKVDYDQFLKLM 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12744.2032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMX0_ECTSI4.020e-20872.27N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX0_ECT... [more]
A0A835ZEJ0_9STRA9.150e-10048.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U6K7F4_9STRA9.050e-7638.64Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U6KDL9_9STRA3.030e-7438.64Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1FMX8_9STRA3.530e-6938.17Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1B6N4_9STRA4.560e-6938.17Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
A0A7S1B6C0_9STRA4.260e-6636.80Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1FNB0_9STRA5.550e-6636.80Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6V2IFV9_9STRA9.430e-6536.43Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2R207_9STRA3.730e-6335.62Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12744contigH-elongata_contig12744:1047..8135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue2.2e-44
Seed eggNOG ortholog2850.Phatr1864
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.EF-hand domain pair
EggNOG OGs2XEB3@2836,KOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons12
Model size2495
Cds size1335
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12744.2032.1prot_H-elongata_contig12744.2032.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12744 2725..8132 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.9763849-UTR-H-elongata_contig12744:1046..21571622929755.9763849-UTR-H-elongata_contig12744:1046..2157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12744 1047..2157 -
1691679145.6776538-UTR-H-elongata_contig12744:1046..21571691679145.6776538-UTR-H-elongata_contig12744:1046..2157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12744 1047..2157 -
1622929755.9970212-UTR-H-elongata_contig12744:2678..27241622929755.9970212-UTR-H-elongata_contig12744:2678..2724Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12744 2679..2724 -
1691679145.6878443-UTR-H-elongata_contig12744:2678..27241691679145.6878443-UTR-H-elongata_contig12744:2678..2724Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12744 2679..2724 -
1622929756.2179139-UTR-H-elongata_contig12744:8132..81351622929756.2179139-UTR-H-elongata_contig12744:8132..8135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12744 8133..8135 -
1691679145.823924-UTR-H-elongata_contig12744:8132..81351691679145.823924-UTR-H-elongata_contig12744:8132..8135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12744 8133..8135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.0097008-CDS-H-elongata_contig12744:2724..28171622929756.0097008-CDS-H-elongata_contig12744:2724..2817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 2725..2817 -
1691679145.6976697-CDS-H-elongata_contig12744:2724..28171691679145.6976697-CDS-H-elongata_contig12744:2724..2817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 2725..2817 -
1622929756.0245295-CDS-H-elongata_contig12744:3160..33011622929756.0245295-CDS-H-elongata_contig12744:3160..3301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 3161..3301 -
1691679145.7108452-CDS-H-elongata_contig12744:3160..33011691679145.7108452-CDS-H-elongata_contig12744:3160..3301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 3161..3301 -
1622929756.0456116-CDS-H-elongata_contig12744:3668..37941622929756.0456116-CDS-H-elongata_contig12744:3668..3794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 3669..3794 -
1691679145.7271366-CDS-H-elongata_contig12744:3668..37941691679145.7271366-CDS-H-elongata_contig12744:3668..3794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 3669..3794 -
1622929756.059553-CDS-H-elongata_contig12744:3967..40991622929756.059553-CDS-H-elongata_contig12744:3967..4099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 3968..4099 -
1691679145.7370577-CDS-H-elongata_contig12744:3967..40991691679145.7370577-CDS-H-elongata_contig12744:3967..4099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 3968..4099 -
1622929756.0779395-CDS-H-elongata_contig12744:4368..44311622929756.0779395-CDS-H-elongata_contig12744:4368..4431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 4369..4431 -
1691679145.753333-CDS-H-elongata_contig12744:4368..44311691679145.753333-CDS-H-elongata_contig12744:4368..4431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 4369..4431 -
1622929756.094527-CDS-H-elongata_contig12744:4841..51271622929756.094527-CDS-H-elongata_contig12744:4841..5127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 4842..5127 -
1691679145.7682629-CDS-H-elongata_contig12744:4841..51271691679145.7682629-CDS-H-elongata_contig12744:4841..5127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 4842..5127 -
1622929756.1125207-CDS-H-elongata_contig12744:5358..54201622929756.1125207-CDS-H-elongata_contig12744:5358..5420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 5359..5420 -
1691679145.77734-CDS-H-elongata_contig12744:5358..54201691679145.77734-CDS-H-elongata_contig12744:5358..5420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 5359..5420 -
1622929756.1302736-CDS-H-elongata_contig12744:5980..61511622929756.1302736-CDS-H-elongata_contig12744:5980..6151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 5981..6151 -
1691679145.785524-CDS-H-elongata_contig12744:5980..61511691679145.785524-CDS-H-elongata_contig12744:5980..6151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 5981..6151 -
1622929756.1498687-CDS-H-elongata_contig12744:6553..66791622929756.1498687-CDS-H-elongata_contig12744:6553..6679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 6554..6679 -
1691679145.7963915-CDS-H-elongata_contig12744:6553..66791691679145.7963915-CDS-H-elongata_contig12744:6553..6679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 6554..6679 -
1622929756.171287-CDS-H-elongata_contig12744:7452..75151622929756.171287-CDS-H-elongata_contig12744:7452..7515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 7453..7515 -
1691679145.8076923-CDS-H-elongata_contig12744:7452..75151691679145.8076923-CDS-H-elongata_contig12744:7452..7515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 7453..7515 -
1622929756.1950493-CDS-H-elongata_contig12744:8060..81321622929756.1950493-CDS-H-elongata_contig12744:8060..8132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 8061..8132 -
1691679145.8162322-CDS-H-elongata_contig12744:8060..81321691679145.8162322-CDS-H-elongata_contig12744:8060..8132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12744 8061..8132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12744.2032.1

>prot_H-elongata_contig12744.2032.1 ID=prot_H-elongata_contig12744.2032.1|Name=mRNA_H-elongata_contig12744.2032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=445bp
MENIMLESPEEPLVVKLIDFGLSKVFTAGDKMRTACGTVYTMAPEVLSGA
GYTQKADLWSAGVIAFVLLSGSLPFLKDEADLNDKARVEQLAQARFVFND
PTWRTISTGGKAFVRGLLKKLPGFRWTAREALDHCADEWGPSFSPPNSGD
LSNQAESACKTNSLRYPCYSFSCGIILTPLSPNPFPSPTSGDISPGKNTE
TRSPSLSPETPLHASRKRLRAVPGAIATSMRRFADYGEFKKAALMVTAFQ
LDKEEIKQLKDAFLEVDTEGNGAISLDELRIVLREHGVDGDEVDRVFGAV
DMDNSGRLHYMEFLAATVEARGYIEEESLKEAFERLDVDSTGFISRDNLR
AVLGKTYDNALIDKMLEEGDVSSSGSIVWHDFLVMMRPVVAQEYRKEAEA
MLADTSPALKEATEVELRAVDQTPSFAETTRQKSGAKESVASSR*
back to top

mRNA from alignment at H-elongata_contig12744:1047..8135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12744.2032.1 ID=mRNA_H-elongata_contig12744.2032.1|Name=mRNA_H-elongata_contig12744.2032.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7089bp|location=Sequence derived from alignment at H-elongata_contig12744:1047..8135- (Himanthalia elongata Himel1 dioecious)
AAGATGGAAAATATCATGCTGGAGTCCCCGGAGGAGCCGCTTGTGGTGAA
GCTGATCGATTTCGGACTATCGAAGGTCCGTACTTCGTGTGTGTGTGTGT
GTGTGTGTGTGTGTATTTATTAAATTGCACATAATCGTGCAATCCGGCTC
TGTCATGCTAGCTCTTCTAAGCTACTCTCGCATTGATCCTCTCAATATGT
ATATATGTTTGTGTATTTACTGCAATCTACTCATTCTATCCTACGAATAC
TGCATTTATATATTTATATATATGTTTGTGTGTATTTATTAAATTGTACA
TAACCGCGCAATCCGGCCCTGTAATATACTCTTTTCTAATCTACTGCATG
TACGGCAACTCATCTGACTAGGGGTTACTTTTCATTAACATTGTGTCGAT
GTGCCTGTATTTAATCATGTGTGTGTGCATTTGTATAAAAAAAGTACACC
GTGCATGCCGTTATTAGCGTGCGGCTTTTGAGCCAGTGGAGCTTCCCCGC
CGCAAACGCTTTCCCCACCCCCCTCGCCTACAGGCGTTTGTGCCTCCTCT
CTTCTCCTGACGGACAGACTCCTTGTTCTTCGTAATGACTCATCTTATTT
GCCATTTTTGGTGATGGCAGGTTTTCACCGCAGGAGACAAGATGCGGACG
GCTTGTGGCACGGTCTACACGATGGCGCCAGAGGTACTGTACTGTACTGT
ACACACTACCCGGTAAAGTGCTGGCTTTGCCTTTACCTTTACCTTTGCCT
GAGCTACAAACATAGTGCAGGGATTTTTGTTACCCCCCGCAGCTCTCTTC
CTCCTTTGTATTTTTAAGTAAAACATAATTTGGTGACTAAAGACTCTTAG
AGTTGAAGGACAGCGCAGACGCCACACACGCACATATACACACATTTTAT
TTTATTTTATTTTATTAAAGTCTTTACAAATAAAAATGCAGTATGCCTCC
TTTGCCACGTATGATCAGAGTTTTTTGTAGAAAATATGATTGAATCCCCC
ATTGGGAATATCAATGCAACAGCAGCCTAGAAGGACTGGCATGTCAGGGA
GGGTCGGATTGCCTTAGCGGTTATGTGCAATTTAATAAATACACACACAC
ACACACATACATCATTCATACACACACATATACACCCTCGCAAGGATATC
CTGAATCGGTGGACCTATGTTGTATCCATGCCGTCGCCGTGACGTTCGAG
CACAACCGATGTTTTGGTAGATTTTGACCTTTGCAGACAAAAGAGCGCGC
CCGCGTCCGTGTGGCAAAAAAAGCACGTTTCTCGGGCGCCGACATTTCTG
TCGCTGCGCCGCGCTCTATCTTACCCGGCACTCGAAGCGGAGCTGTGCGA
GGTAGGCACATGAGACAAGGGTAATGATGCGAGTGCCCCAATGGCATCCG
AATGCCCACAGGCGTGACCTCCACGGTGGTGCTCCACACGCGTGACAACC
GCCCAGGTGCTCTCCGGTGCCGGTTACACGCAGAAGGCCGACCTCTGGAG
CGCGGGCGTCATCGCGTTTGTGCTGCTGTCCGGGAGCCTGCCCTTCCTCA
AGGATGAGGCGGATCTCAACGACAAGGCAAGGGTTCGCATCGCCCACCCA
CCTCACCAATCAACCCCGTCTCCCACCCCCCGACCCCCGCCCCGTCCGGA
TGAAACATTACATGTTGCACTTTTATTTTATTCCTCCCGCACCCTTGCTC
TAGCCGTTCGTTTCATATTTGTGACTCATCTCTCGTACGCTGAAAATAAT
TTCGAGTTTCTTCATTTAAACGAGGCATCTTCGTTCCGAAATTAAATGCA
ACCCTGAAATATTGTTTTGCTAACGTATTCAGAGCTCTCTGTCTGACGGA
GGAACGCCTTTCCACACTTAGCCCCCGTCCACGATGTCACTATATACCCC
ACCGATGTTGCTTCATATCCCGAAGATGCTGCTACCAACCACACCGATGC
TGTTCTATACCCCACCGATGCTGCGCAGGACAAGGTAGAGCAGCTGGCGC
AGGCCCGTTTCGTGTTTAACGATCCCACCTGGCGAACGATCTCCACGGGT
GGAAAGGCGTTCGTGCGCGGCCTGCTCAAGAAGCTGCCGGGTTTCCGCTG
GACTGCGAGGGAGGCGTTGGACCACTGCGCGGACGAATGGGGGCCGTCAT
TCTCAGTGAGACTGGATTGGATTATATAACTAGACTAACGATGCAGACAA
GGCGAAAAATTACTTTGGCGTTCCCTATTTTAAGACCGTGTTGGTTTGTG
TACTCTCTCTCTCTTATCTCTTAGCCGTTACACCTTACCGCTTTGCACAG
TCACGCCGCTTAATACTTGTGGTTGTATCGGGGCCCGTCGAAAAGAAAAA
AAATCGCGTTGCGCAGCTTTGTGGTGAGTTGCCGCGTACGTCCTTGATTC
GCGTGTCTTCTGGGACAATAAACAAGGCTTGCTGTTTTCGCGCGCACTGT
TGAAATTTTAAATCATGAGTATGATCGCGCGCGCCACGCGACCGCCGTGT
GCTTCCTACTTATTCTGACCTTTAACGGACCCGAGATATGCAGCATGGTC
GACCGAATTGGACGATTGTAACTGTATTAATGGACATGGTGCACGAATAG
CTCTAAGAGACGCCACGAGTGACGGATGTGCACCAAAGCGCGACCAACCC
TTCTCTGACTTTTCCGTTTTTCTGATTGATATCTTCTCTATTTCCTCTAT
CCCCTCCCAATCCAGCCGCCCAACAGTGGTGATCTTAGCAACCAAGCTGA
ATCGGCCTGCAAGACCAACAGTTTGAGGTGCGGATTTAACGTTTTTAAGA
GGCTCTTGAAGATCGCTATTGTGAAGCCGAATGTTCACTTTTCGACGTGC
GTACTTTTAGCCGTCAGGTTGCAGCCTCCTTTTAAATAACGCGCATGCGT
TGTGTAGCGACAACTAACGTAGCTGTGTAGTTCTTTTATGCTTTACTTCC
GAGGACAAGGATCTCGGTCGGTGGGGTGAGCTCATCAAGAGCGACGCGTA
ATGCGAAGATATCCCTGCTACTCCTTCTCTTGTGGAATTATCTTGACTCC
CCTTTCCCCTAACCCTTTTCCTTCCCCCACCAGCGGTGATATCTCTCCCG
GGAAAAATACGGAGACGAGGTCGCCTTCGTTGTCTCCGGAGACGCCGCTG
CACGCTTCGCGGAAGCGCCTGAGAGCGGTGCCCGGCGCCATCGCGACATC
GATGCGACGGTTCGCGGACTACGGGGAGTTCAAGAAGGCCGCCCTCATGG
TGACGGCCTTCCAGCTCGACAAGGAGGAGATCAAGCAGCTTAAGGTGCGG
GTGGCGCGTGGGGGAATGAGGGGGCGGGAATTTTGCGTTGTCACTTCTGC
TTTAGTCGTGGACACGAGACTGTGCGACCCGTAAACATGTTGCTGTAGGT
AACCTTTTATTTTATTTTTTATGACCGTTGATTTATTTTGCTCTTGTGAT
AAAGGAGGACCCAGCGCGGCCGTCTCTTTGGTGTGTCCAGCGGCGAACAA
GCATAGAATCAAAATCCTTTAGCACTCATTTTTGTATATTTCTCGAACAG
TAATGTATGTCGACAGAAAAACGCACCTGATCCCAATATATGGTTTGTGA
ATTAGTCCCGCTTCTTTAGCGACAGTGAGCCTCCGCCGCGGCCGGAACTT
CGATGTTCTCAAATATTGTACCCCGAACCCGCTGCCCGCATTTTTGTTTA
CCAGGACGCGTTTTTGGAGGTGGACACGGAAGGAAACGGCGCCATCAGCT
TGGACGAGCTCCGAATCGTACGTACTTTACTATAAGTGTACTTGAACATG
TAGGAAGTGGGTTATCGTCATGGGTACCAACCGTGCTAACCGTGTTTGTA
ATCCAGTCTTGCGAATAATTCTTCCAAGAGTTGATTGGCTTCGGGGGCGG
TGCTCACGGTCTACAAGCGTAGTAATAGTACCTTAGGGTACAGTATAACT
TTTGCTTGCTACAGTGCTGCTCTCGTCGGGTCCGCGGTTATCATGTTTTT
TGTTTTGTTTTTGTTTTTTAACTCTTAAATGGTCAGGTACTGCGCGAGCA
CGGCGTGGATGGCGATGAAGTGGACAGAGTGTTCGGCGCGGTGGACATGG
ACAACAGCGGGCGACTCCACTACATGGAGTTTCTCGCGGCCACGGTCGAG
GCCAGGGGTTATATCGAGGTGAAACGGAGCGCCTGCGCGGGGTTTTCTAG
AGAGAGTCCCTGATCGATCGCGCGTTGTTCGGAAGTTTGCTCGCTCGTTC
GTTCACTGTTTCCGCGACGGGCGACAATATAATGTCCCGCGGCGGTCATT
GTTTTTGTTGTGGTGTGTATTTGTCGCACCGTTGAGCACAGGAGGAGAGC
TTGAAGGAGGCGTTCGAGCGACTGGACGTGGACAGTACAGGCTTCATCTC
TCGAGACAACCTGAGGGCGGTGCTGGGCAAGACGTACGACAACGCTCTCA
TAGACAAGATGCTGGAGGTAACTCGTGATTTGTGTGCGGGTAGACCTTGT
TTTTTAATCATTACAAAGAGTTAAAGTTACCATCCTTGTCCCTTGTTCTT
CCCCCCCCCACCCCCCTCTTTCTACCGGGGCATAAATCGCACTACCGCTC
TGCGGCTAAACGGGAACCATTAGTATTGGTAGTATAGTCAGGGTCGCGTG
TCGCGTAACGGTAGGCTAGGTGTTTTGTTTCACAGCGCCTCTTCTCTTCG
CCCGGTACTGTTGGGGGTTTCCCGCGCTGGGGGGAAGGCGGAAAAGTGGG
GGGTGGGGTGGAGGGATTCCTCTTGGAAGATTCAGTCGCCTATTAATGAA
TGTTGTACCTTTTTTTCGATTGCCGGGGTTACAGGAGGGAGATGTATCGT
CTTCGGGATCCATCGTTTGGCACGACTTCTTGGTAATGATGAGGCCGGTC
GTGGCGCAGGAGTACCGGAAGGAAGCCGAAGCCATGTTGGCGGATACTTC
GCCAGCGCTTAAGGAAGCGACTGAGGTAGACATATATGAACGGTTGGTAG
ACAATGCCTACGATCGTCTATAGGTTGGGACAGCATTGCGACGAAGTAGC
CTCTCGAAGGGTGCATGTACACTCGTTATCAAAGAAGTCGCGGGTTGTAT
GCCTCTACGCAAGGTAAATTGAGAAGCGCGTGGATTCAGTGCGGCAGGTG
TGCGCGATTTCGGTTGTGTGTCTTGCGGTAGCGATATATACTCCGGAACG
TGCGCTCTGCAGCTCTGTCGATTCATACACTACTGTAGTCATAAATAAAC
ACGATGCGCATGCGATTTGACGGACAAAACTCTTTTGAAAAATATCATTT
CTACAAAACAAAATGCAGGTTGAGCTGAGGGCGGTGGACCAGACACCATC
CTTCGCGGAGACTACTCGTCAAAAGTCCGGCGCTAAAGAATCGGTCGCCT
CGAGTCGATAGCATGAGGAGAAAGCGTTGGGTTGACTTTCGTCATCTGCT
GTCACTGGTGAGTGTTGAAGCTTTGAAGGCGTTTGATACTGTAGCCCAAA
TGAGTGGGCGTCGATCGATAACCATGCCCTCTACCTTTGGTTGAGGGCCT
GCTTTCACGTCTGACGTATCACAATTCGTCCACTATCGTGCTGTTTTACT
GTTTTAGTAAATTATTCGCCTTGTGGTGGAAATATGCACATTCGCATTCG
GACGCACGCACGCCTGGACTGTCGCAGTGTTAGTTCTTATCATCTCTACG
CTGACGATAGTTGGTCTCCTGGACTGCACCTCTCATGGTGTTAAGAAGGC
GTCGATGTTTCGGAGGGCACAACGCTCTGCAATGCACAGTACAGTACTCG
AAGACGGTTATGATTTTGCTCCTCTATATTCGTCCTTCGTCTGCGTGGGA
TCGCCGATTTTGATGCCATCAATCTTCGCCGATTCCCGTAATAATATTTT
ACCTTTAAATTAAGTAGTATTGTAGTTTCCCTGACACTGCGAACACTGCA
CTTATGCGTCCTGCATGTACGGAAACAGTCTTCTTCCTCTTCCTCAGTTC
CTGGCATCGGAAGGCGGAAATCGCTTCGAATCTCGAGGATACGGGGAATC
CTTTTTGAACGTCTCCGCCGTCCCACCCTAATGGTTGTTTCTCAGGCGTC
GAGTTAGCTCTGTGTGCATAAGAACGACGTGTTAAAGCGTTTTTGTGTCG
ACAAGTTTCGTGCACCGGGTGGGTGCGACGAGTTGCGCCTTGTTCTTCGC
ACAGCTGCGTCGCAGAGTGTGGTGCTGCTGCTGCTGCTGCTGCTGCTATA
CCACATCTGCGTTGGATATTTGCAGACACAACACTGTTATAGTTTTCATG
TTTTGTGTTCCCTGGTCGTCTATTCGATCGATCGATCGATCGATTGATTT
GGCTGATTGGTTGATTTGTTTGACATTGTTTTTTGTTGTATCGTGCAAGG
GCGAGCTGTGCTACTCGTAGCTCCGAAAAATACGGCAGGCGGATGATGTA
CCGACGAATTACACCCTGGGAACATAGTAATTTGATAAGAGCCTAAGAGT
CGTCCGGTGCATCTCGACGACGCACATGCACGATTTGAAGAGTGTAACGT
TTTTACAGACAAATGGGTAGTTTTTGCAGACACATGGGTAGTTAGGGTAC
CGTTGTTCCGGACGAATTGTTCGTCATCTTTCCATTCAAGTGTATTGTCA
TTAAGATTCGCCCCCATGCACCACCGGGCATTTCGTTGAACATGTTACAG
CGTACCGTGGTAAGGTCAAATCAGCTTGATGGAATCGGACGCGGCGCCAT
TTGTCCTTGTGTACCGTTGTATACTCCGCTTGGTTGCGTTGGGCACTCGC
CCTCTGCAGTGCGGTGCAGTGCAGGGCGTAGGCTGTGGATCGTTTATGCA
CGGAGATTAGCGTAGTGTAGCGTAATAGAACGGTTGCTGGATCAAGGCTT
AAACGTAGTAGGACCAGGAGCGTAGCTCTATGCCGTTGCCGTTGCCTTTA
CCTAGATTTTCAGTTGCGGCTCGTTGTAAGTAGATCTTCGAGAGGAGGGT
TCTTGTGATGTTCGGTTCACGTGGCACCTTGACCTTCACATTTTTGGCTA
TTTTTAGCTATGCACGCAACTCTTACGTGGGTCTAGCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12744:1047..8135-

>mRNA_H-elongata_contig12744.2032.1 ID=mRNA_H-elongata_contig12744.2032.1|Name=mRNA_H-elongata_contig12744.2032.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2670bp|location=Sequence derived from alignment at H-elongata_contig12744:1047..8135- (Himanthalia elongata Himel1 dioecious)
ATGGAAAATATCATGCTGGAGTCCCCGGAGGAGCCGCTTGTGGTGAAGCT
GATCGATTTCGGACTATCGAAGATGGAAAATATCATGCTGGAGTCCCCGG
AGGAGCCGCTTGTGGTGAAGCTGATCGATTTCGGACTATCGAAGGTTTTC
ACCGCAGGAGACAAGATGCGGACGGCTTGTGGCACGGTCTACACGATGGC
GCCAGAGGTTTTCACCGCAGGAGACAAGATGCGGACGGCTTGTGGCACGG
TCTACACGATGGCGCCAGAGGTGCTCTCCGGTGCCGGTTACACGCAGAAG
GCCGACCTCTGGAGCGCGGGCGTCATCGCGTTTGTGCTGCTGTCCGGGAG
CCTGCCCTTCCTCAAGGATGAGGCGGATCTCAACGACAAGGCAAGGGTGC
TCTCCGGTGCCGGTTACACGCAGAAGGCCGACCTCTGGAGCGCGGGCGTC
ATCGCGTTTGTGCTGCTGTCCGGGAGCCTGCCCTTCCTCAAGGATGAGGC
GGATCTCAACGACAAGGCAAGGGTAGAGCAGCTGGCGCAGGCCCGTTTCG
TGTTTAACGATCCCACCTGGCGAACGATCTCCACGGGTGGAAAGGCGTTC
GTGCGCGGCCTGCTCAAGAAGCTGCCGGGTTTCCGCTGGACTGCGAGGGA
GGCGTTGGACCACTGCGCGGACGAATGGGGGCCGTCATTCTCAGTAGAGC
AGCTGGCGCAGGCCCGTTTCGTGTTTAACGATCCCACCTGGCGAACGATC
TCCACGGGTGGAAAGGCGTTCGTGCGCGGCCTGCTCAAGAAGCTGCCGGG
TTTCCGCTGGACTGCGAGGGAGGCGTTGGACCACTGCGCGGACGAATGGG
GGCCGTCATTCTCACCGCCCAACAGTGGTGATCTTAGCAACCAAGCTGAA
TCGGCCTGCAAGACCAACAGTTTGAGCCGCCCAACAGTGGTGATCTTAGC
AACCAAGCTGAATCGGCCTGCAAGACCAACAGTTTGAGATATCCCTGCTA
CTCCTTCTCTTGTGGAATTATCTTGACTCCCCTTTCCCCTAACCCTTTTC
CTTCCCCCACCAGCGGTGATATCTCTCCCGGGAAAAATACGGAGACGAGG
TCGCCTTCGTTGTCTCCGGAGACGCCGCTGCACGCTTCGCGGAAGCGCCT
GAGAGCGGTGCCCGGCGCCATCGCGACATCGATGCGACGGTTCGCGGACT
ACGGGGAGTTCAAGAAGGCCGCCCTCATGGTGACGGCCTTCCAGCTCGAC
AAGGAGGAGATCAAGCAGCTTAAGATATCCCTGCTACTCCTTCTCTTGTG
GAATTATCTTGACTCCCCTTTCCCCTAACCCTTTTCCTTCCCCCACCAGC
GGTGATATCTCTCCCGGGAAAAATACGGAGACGAGGTCGCCTTCGTTGTC
TCCGGAGACGCCGCTGCACGCTTCGCGGAAGCGCCTGAGAGCGGTGCCCG
GCGCCATCGCGACATCGATGCGACGGTTCGCGGACTACGGGGAGTTCAAG
AAGGCCGCCCTCATGGTGACGGCCTTCCAGCTCGACAAGGAGGAGATCAA
GCAGCTTAAGGACGCGTTTTTGGAGGTGGACACGGAAGGAAACGGCGCCA
TCAGCTTGGACGAGCTCCGAATCGACGCGTTTTTGGAGGTGGACACGGAA
GGAAACGGCGCCATCAGCTTGGACGAGCTCCGAATCGTACTGCGCGAGCA
CGGCGTGGATGGCGATGAAGTGGACAGAGTGTTCGGCGCGGTGGACATGG
ACAACAGCGGGCGACTCCACTACATGGAGTTTCTCGCGGCCACGGTCGAG
GCCAGGGGTTATATCGAGGTACTGCGCGAGCACGGCGTGGATGGCGATGA
AGTGGACAGAGTGTTCGGCGCGGTGGACATGGACAACAGCGGGCGACTCC
ACTACATGGAGTTTCTCGCGGCCACGGTCGAGGCCAGGGGTTATATCGAG
GAGGAGAGCTTGAAGGAGGCGTTCGAGCGACTGGACGTGGACAGTACAGG
CTTCATCTCTCGAGACAACCTGAGGGCGGTGCTGGGCAAGACGTACGACA
ACGCTCTCATAGACAAGATGCTGGAGGAGGAGAGCTTGAAGGAGGCGTTC
GAGCGACTGGACGTGGACAGTACAGGCTTCATCTCTCGAGACAACCTGAG
GGCGGTGCTGGGCAAGACGTACGACAACGCTCTCATAGACAAGATGCTGG
AGGAGGGAGATGTATCGTCTTCGGGATCCATCGTTTGGCACGACTTCTTG
GTAATGATGAGGCCGGTCGTGGCGCAGGAGTACCGGAAGGAAGCCGAAGC
CATGTTGGCGGATACTTCGCCAGCGCTTAAGGAAGCGACTGAGGAGGGAG
ATGTATCGTCTTCGGGATCCATCGTTTGGCACGACTTCTTGGTAATGATG
AGGCCGGTCGTGGCGCAGGAGTACCGGAAGGAAGCCGAAGCCATGTTGGC
GGATACTTCGCCAGCGCTTAAGGAAGCGACTGAGGTTGAGCTGAGGGCGG
TGGACCAGACACCATCCTTCGCGGAGACTACTCGTCAAAAGTCCGGCGCT
AAAGAATCGGTCGCCTCGAGTCGATAGGTTGAGCTGAGGGCGGTGGACCA
GACACCATCCTTCGCGGAGACTACTCGTCAAAAGTCCGGCGCTAAAGAAT
CGGTCGCCTCGAGTCGATAG
back to top