mRNA_H-elongata_contig127375.2028.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127375.2028.1
Unique NamemRNA_H-elongata_contig127375.2028.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: D7FQU6_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.710e-47
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLFTSTD 270
            QGMNFVAL+LL+AC GDDE AFWIL GMC+ L L GLWCQGLERLDLCFF+L+RLL+ HCPSLRQHLSDEGVELSMFTSRWFVTLFTSTD
Sbjct: 1240 QGMNFVALALLEACEGDDENAFWILAGMCENLELGGLWCQGLERLDLCFFSLERLLRRHCPSLRQHLSDEGVELSMFTSRWFVTLFTSTD 1329          
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: A0A2C9MAM6_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9MAM6_BIOGL)

HSP 1 Score: 70.5 bits (171), Expect = 3.370e-12
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLFTS 264
            QG++F+A +LL      +E AF +L  +     L  L+ QG + L L F+ L+RL++ H P L  H ++ G+E+ MF S+WF+TLFT+
Sbjct:  462 QGLSFLAAALLLHMP--EEQAFCVLVKIMYDYQLRELFKQGFQVLHLKFYQLERLMQDHLPDLYDHFAEMGLEIHMFASQWFLTLFTA 547          
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: A0A2T7NKP9_POMCA (Uncharacterized protein n=4 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NKP9_POMCA)

HSP 1 Score: 70.5 bits (171), Expect = 3.440e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLFTS 264
            QG++F+A +LL      +E AF +LT +     L  L+ QG E L L F+ L+RLL+     L +H  D G+E+ MF S+WF+TLFT+
Sbjct:  616 QGLSFLAAALLLHMP--EEQAFCVLTKIMFDYGLRNLFKQGFEELHLKFYQLERLLQDQMSDLYEHFMDMGLEVHMFASQWFLTLFTA 701          
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: A0A1V9YXP8_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXP8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.720e-12
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLE---GLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLFTS 264
            QGMNF+   LL+  A D+   FW    +C+         L+  G  +L   F  LD L++   P L  H+  +GV +SMF +RWF+TLF+S
Sbjct:  747 QGMNFIVRLLLENEANDEAAVFWTFVQLCEGSSATTSCALFDAGFHQLQTLFTKLDILIREQMPDLHIHMERQGVHVSMFAARWFLTLFSS 837          
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: A0A7S0I2Q3_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I2Q3_9CRYP)

HSP 1 Score: 68.6 bits (166), Expect = 1.590e-11
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLF 258
            QGMNF+   LL       E AFW+L  M  R  L  L+     +L +  F LDRL+    PSL QH S++G +++ FTS W +TLF
Sbjct:  292 QGMNFLCAILLLHMR--QEHAFWVLVQMMRRYRLRDLYLSRSPQLAVELFKLDRLILSCTPSLHQHFSEQGFDVTTFTSEWLLTLF 375          
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: A0A024U9D0_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9D0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.610e-11
Identity = 34/88 (38.64%), Postives = 47/88 (53.41%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLFTS 264
            QGMNFV   LL     D+   FW    +CD    + L+  G   L + F  L+ L++   P +  H   +GV +SMF +RWF+TLFTS
Sbjct:  581 QGMNFVVRLLLDN-QKDEATVFWAFVNLCDAAPTQSLYEPGFHTLHVLFGKLEVLVQQQMPDVYNHFITQGVAVSMFAARWFLTLFTS 667          
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: J9ITY4_9SPIT (TBC domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9ITY4_9SPIT)

HSP 1 Score: 68.6 bits (166), Expect = 1.620e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLFTST 267
            QGMNF++  LL     D+ +AF++L  +     L+ ++  G E L      +D LLK   P+L+QH  D  VE+ MF+S WF++LFTST
Sbjct:  669 QGMNFLSACLLLH--SDEVIAFYLLETLLSDYELKDVYMSGFEGLYKHCKIVDALLKEKLPNLQQHFKDNQVEVEMFSSDWFISLFTST 755          
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: A0A0P4WHT7_SCYOL (Uncharacterized protein n=6 Tax=Portunidae TaxID=6757 RepID=A0A0P4WHT7_SCYOL)

HSP 1 Score: 68.6 bits (166), Expect = 1.640e-11
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLFTS 264
            QG++F+A +LL      +E  F +L  +     L  L+  G E L + FF L +L++ H P L QH  ++GVE+ MF S+WF+TL+T+
Sbjct:  694 QGLSFLAAALLLHMP--EEQTFCVLKRIMFEYGLRELFRDGFEVLHMRFFQLGKLIEEHIPELWQHFQEQGVEVHMFASQWFLTLYTA 779          
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: A0A7S2PZU8_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PZU8_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 2.160e-11
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTL 255
            QGM F+   LL     +D  AF +L  + D   +  L+  GL  L+  FF L RLL  H PSL  HL+ +GVE +M+ S+WF+T+
Sbjct:   66 QGMGFICGVLLMYMCEED--AFLMLISLLDNYRMSKLFMPGLPLLNKYFFQLQRLLAMHMPSLCNHLAQQGVEPTMYASKWFMTV 148          
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Match: A0A4Y2D245_ARAVE (Rab GTPase-activating protein 1-like n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2D245_ARAVE)

HSP 1 Score: 68.2 bits (165), Expect = 2.220e-11
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 QGMNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTLDRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLFTS 264
            QG +F+A +LL      +E AF IL  +     L  L+  G E L L  + L++L++   P L  H +D G+E+ MF S+WF+TLFTS
Sbjct:  721 QGQSFLAAALLLHIP--EEQAFSILVKIMFEYGLRNLFKNGFEELHLRLYQLEKLIEEQIPELHAHFTDLGIEMHMFASQWFLTLFTS 806          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127375.2028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQU6_ECTSI2.710e-4785.56Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
A0A2C9MAM6_BIOGL3.370e-1239.77Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A2T7NKP9_POMCA3.440e-1242.05Uncharacterized protein n=4 Tax=Pomacea canalicula... [more]
A0A1V9YXP8_9STRA8.720e-1237.36Rab-GAP TBC domain-containing protein n=1 Tax=Thra... [more]
A0A7S0I2Q3_9CRYP1.590e-1141.86Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A024U9D0_9STRA1.610e-1138.64Rab-GAP TBC domain-containing protein n=2 Tax=Apha... [more]
J9ITY4_9SPIT1.620e-1140.45TBC domain-containing protein n=1 Tax=Oxytricha tr... [more]
A0A0P4WHT7_SCYOL1.640e-1138.64Uncharacterized protein n=6 Tax=Portunidae TaxID=6... [more]
A0A7S2PZU8_9DINO2.160e-1141.18Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A4Y2D245_ARAVE2.220e-1139.77Rab GTPase-activating protein 1-like n=1 Tax=Arane... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127375contigH-elongata_contig127375:730..1342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue7.1e-40
Seed eggNOG ortholog2880.D7FQU6
Preferred nameFASTKD3
KEGG koko:K19944
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-16_000800.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127375.2028.1prot_H-elongata_contig127375.2028.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127375 730..1336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.523115-CDS-H-elongata_contig127375:729..8941622929755.523115-CDS-H-elongata_contig127375:729..894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127375 730..894 -
1691679145.4635687-CDS-H-elongata_contig127375:729..8941691679145.4635687-CDS-H-elongata_contig127375:729..894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127375 730..894 -
1622929755.5404775-CDS-H-elongata_contig127375:1237..13361622929755.5404775-CDS-H-elongata_contig127375:1237..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127375 1238..1336 -
1691679145.4745579-CDS-H-elongata_contig127375:1237..13361691679145.4745579-CDS-H-elongata_contig127375:1237..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127375 1238..1336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.5510466-UTR-H-elongata_contig127375:1336..13421622929755.5510466-UTR-H-elongata_contig127375:1336..1342Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127375 1337..1342 -
1691679145.4871185-UTR-H-elongata_contig127375:1336..13421691679145.4871185-UTR-H-elongata_contig127375:1336..1342Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127375 1337..1342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127375.2028.1

>prot_H-elongata_contig127375.2028.1 ID=prot_H-elongata_contig127375.2028.1|Name=mRNA_H-elongata_contig127375.2028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MNFVALSLLKACAGDDEMAFWILTGMCDRLHLEGLWCQGLERLDLCFFTL
DRLLKHHCPSLRQHLSDEGVELSMFTSRWFVTLFTSTD
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mRNA from alignment at H-elongata_contig127375:730..1342-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127375.2028.1 ID=mRNA_H-elongata_contig127375.2028.1|Name=mRNA_H-elongata_contig127375.2028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=613bp|location=Sequence derived from alignment at H-elongata_contig127375:730..1342- (Himanthalia elongata Himel1 dioecious)
CAGGGCATGAACTTTGTGGCTCTCTCATTGTTGAAAGCTTGTGCCGGGGA CGATGAAATGGCCTTCTGGATTCTCACAGGGATGTGCGATCGACTCCATC TCGAGGTGAGCATATCGTATACTGGTACAATATAGTATATACTGTACACG CATATAATTTGCTCCGTGTGTATTCCTCTCTCTCGACAACACGGACAGCG AAGATGCCGCGCGCAAGCTTTAAGGGTTCTAGAAAGCTACCGAGTGTTTT TTTAGACGTCATTATATGTTGGCTATATATATATATATATATATATTAGT TGATTGTAGGAGGGAAAATCTGGCGGGGATGAACATCGATGATCCACGAA AGTGCGGTACCACAACATCCTATGATCCCCCTCGTTTTTGCCGATGCCGT TGACACCTCCGGGGCTTCAACTCCTCCTATCTCTTCCTCCCTCGACAGGG GCTATGGTGCCAAGGTCTGGAGAGGCTGGACCTGTGCTTCTTCACCCTGG ACCGTCTATTGAAGCACCATTGCCCGTCACTCCGCCAGCATCTGTCGGAC GAGGGTGTCGAGCTAAGCATGTTCACCAGCCGGTGGTTCGTGACGCTCTT CACAAGCACCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig127375:730..1342-

>mRNA_H-elongata_contig127375.2028.1 ID=mRNA_H-elongata_contig127375.2028.1|Name=mRNA_H-elongata_contig127375.2028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig127375:730..1342- (Himanthalia elongata Himel1 dioecious)
ATGAACTTTGTGGCTCTCTCATTGTTGAAAGCTTGTGCCGGGGACGATGA
AATGGCCTTCTGGATTCTCACAGGGATGTGCGATCGACTCCATCTCGAGA
TGAACTTTGTGGCTCTCTCATTGTTGAAAGCTTGTGCCGGGGACGATGAA
ATGGCCTTCTGGATTCTCACAGGGATGTGCGATCGACTCCATCTCGAGGG
GCTATGGTGCCAAGGTCTGGAGAGGCTGGACCTGTGCTTCTTCACCCTGG
ACCGTCTATTGAAGCACCATTGCCCGTCACTCCGCCAGCATCTGTCGGAC
GAGGGTGTCGAGCTAAGCATGTTCACCAGCCGGTGGTTCGTGACGCTCTT
CACAAGCACCGATGGGCTATGGTGCCAAGGTCTGGAGAGGCTGGACCTGT
GCTTCTTCACCCTGGACCGTCTATTGAAGCACCATTGCCCGTCACTCCGC
CAGCATCTGTCGGACGAGGGTGTCGAGCTAAGCATGTTCACCAGCCGGTG
GTTCGTGACGCTCTTCACAAGCACCGAT
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