mRNA_H-elongata_contig127350.2027.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127350.2027.1
Unique NamemRNA_H-elongata_contig127350.2027.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: D8LDY8_ECTSI (Phatr1_ua_kg.chr_17000030 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY8_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.500e-49
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QER LVDELVA+NCDPNT+YNEVASLFLRDADTAIRQLFHFRESG+R+ +TFSSGALFVFFVPY IMGCLTYGIAVPSGLFVPSLLSGAAFG
Sbjct:  324 QERTLVDELVAYNCDPNTEYNEVASLFLRDADTAIRQLFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFG 415
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: A0A7R9U7Y3_9STRA (Chloride channel protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Y3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.330e-39
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QER+LVD+LV+F CD +T+YNEVASLFL DADTAI+QLFHFRESG  +  TFSSGAL +FF PY IMGC+TYG+AVPSGLFVPSLLSGAAFG
Sbjct:  460 QERELVDDLVSFGCDEDTEYNEVASLFLTDADTAIKQLFHFRESGDDENNTFSSGALLLFFFPYIIMGCVTYGLAVPSGLFVPSLLSGAAFG 551
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: A0A7S1D5H2_CYCTE (Chloride channel protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H2_CYCTE)

HSP 1 Score: 138 bits (348), Expect = 5.270e-37
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QE++LVD LVAF CDP  +YNEVASL   DADTAI+QLFHFRE+G  D++TFSS ALF+FFVPY  +  +TYGIAVPSGLFVPSLLSGAAFG
Sbjct:   49 QEKNLVDALVAFRCDPKHEYNEVASLIFTDADTAIKQLFHFREAGADDSSTFSSAALFLFFVPYIALASITYGIAVPSGLFVPSLLSGAAFG 140
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: A0A7S2UST4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UST4_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.230e-36
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QE+ LVD+LV+FNC P+ QYN+VASL+  +ADTAI+QLFHFRE G+ D  TFSSGALFVFF+PY  + C TYG+ VPSGLFVP LLSGAAFG
Sbjct:  107 QEKQLVDDLVSFNCPPD-QYNQVASLYFTEADTAIKQLFHFREGGEADVQTFSSGALFVFFLPYICLACWTYGLGVPSGLFVPCLLSGAAFG 197
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: A0A7S2WR56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WR56_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.000e-35
Identity = 61/92 (66.30%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QE++LV ELV+F C+P T+YNEVA+L   DADTAI+QLFHF+E G  ++ TFSS AL +FF+PY  M    YGIA+PSGLFVPSLLSGAAFG
Sbjct:   46 QEQNLVKELVSFKCNPKTEYNEVATLIFTDADTAIKQLFHFQEDGSNNSRTFSSAALVIFFLPYITMATFVYGIAIPSGLFVPSLLSGAAFG 137
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: A0A7S0UJS8_9STRA (Chloride channel protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJS8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 9.000e-35
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QE++LV+ LV F CDP  +YNEVASL   +ADTAI+QLFHFRE+G  D ATFSSGALF+FFVPY  M  + YGIAVPSGLFVPSLL+GAAFG
Sbjct:  353 QEKNLVESLVPFQCDPEKEYNEVASLIFAEADTAIKQLFHFREAGGDDNATFSSGALFLFFVPYITMATVVYGIAVPSGLFVPSLLAGAAFG 444
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: K0R8R8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8R8_THAOC)

HSP 1 Score: 133 bits (335), Expect = 2.450e-34
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QE++LV  LV FNC P  +YNEVASL+  +AD AIRQLFHFRE+G+ DT+TFSS ALF+FF+PY  +  L YGIAVPSGLFVPSLLSGAAFG
Sbjct:  605 QEKELVGNLVPFNCIPGKEYNEVASLYFCEADVAIRQLFHFRETGETDTSTFSSAALFLFFIPYITLASLVYGIAVPSGLFVPSLLSGAAFG 696
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: A0A1E7FXI3_9STRA (Chloride channel protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXI3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.370e-34
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QE++LV+ LV F C+P  +YNEVASL   +ADTAI+QLFHFRE G  D +TFSSGALF+FFVPY +M  + YGIAVPSGLFVPSLL+GAAFG
Sbjct:  409 QEKNLVESLVPFQCEPGKEYNEVASLIFTEADTAIKQLFHFREGGGEDNSTFSSGALFLFFVPYIMMSSVVYGIAVPSGLFVPSLLAGAAFG 500
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: A0A7S2CPI8_9STRA (Chloride channel protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPI8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.670e-33
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QER+L+++LV+F C PN +YNEVASLF  D+DTAI+QLFHFRE G+ D  TFS+GALF+F+  Y  M C+TYG+AVPSGLFVPSLLSGAA G
Sbjct:  124 QERELIEQLVSFQCKPN-EYNEVASLFFTDSDTAIKQLFHFREIGENDQHTFSAGALFLFWSLYTAMACITYGLAVPSGLFVPSLLSGAAMG 214
[Close]
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Match: A0A7S2YMG2_9STRA (Chloride channel protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMG2_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.880e-33
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTATFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG 276
            QE+ LV+ LV F C P  +YNEVASL   + D AI+QLFHFRE+G  D +TFSSGALF+FF+PY ++  LTYGIAVPSGLFVPSLLSGAAFG
Sbjct:  347 QEKSLVEHLVPFRCKPGKEYNEVASLIFTEPDIAIKQLFHFREAGADDVSTFSSGALFMFFIPYIMLATLTYGIAVPSGLFVPSLLSGAAFG 438
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127350.2027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDY8_ECTSI1.500e-4991.30Phatr1_ua_kg.chr_17000030 n=1 Tax=Ectocarpus silic... [more]
A0A7R9U7Y3_9STRA1.330e-3978.26Chloride channel protein n=1 Tax=Pinguiococcus pyr... [more]
A0A7S1D5H2_CYCTE5.270e-3773.91Chloride channel protein n=1 Tax=Cyclophora tenuis... [more]
A0A7S2UST4_9STRA3.230e-3670.65Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WR56_9STRA2.000e-3566.30Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S0UJS8_9STRA9.000e-3571.74Chloride channel protein n=1 Tax=Pseudo-nitzschia ... [more]
K0R8R8_THAOC2.450e-3470.65Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A1E7FXI3_9STRA3.370e-3469.57Chloride channel protein n=1 Tax=Fragilariopsis cy... [more]
A0A7S2CPI8_9STRA3.670e-3368.48Chloride channel protein n=2 Tax=Dictyocha speculu... [more]
A0A7S2YMG2_9STRA3.880e-3368.48Chloride channel protein n=1 Tax=Amphiprora paludo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127350contigH-elongata_contig127350:1264..1691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue5.7e-40
Seed eggNOG ortholog2880.D8LDY8
Preferred nameCLCN7
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
EggNOG free text desc.Chloride Channel
EggNOG OGsCOG0038@1,KOG0474@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04040
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.4616663-CDS-H-elongata_contig127350:1263..14281622929755.4616663-CDS-H-elongata_contig127350:1263..1428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127350 1264..1428 -
1691679145.4447-CDS-H-elongata_contig127350:1263..14281691679145.4447-CDS-H-elongata_contig127350:1263..1428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127350 1264..1428 -
1622929755.4782996-CDS-H-elongata_contig127350:1580..16911622929755.4782996-CDS-H-elongata_contig127350:1580..1691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127350 1581..1691 -
1691679145.4547412-CDS-H-elongata_contig127350:1580..16911691679145.4547412-CDS-H-elongata_contig127350:1580..1691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127350 1581..1691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127350.2027.1prot_H-elongata_contig127350.2027.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127350 1264..1691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127350.2027.1

>prot_H-elongata_contig127350.2027.1 ID=prot_H-elongata_contig127350.2027.1|Name=mRNA_H-elongata_contig127350.2027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
QERDLVDELVAFNCDPNTQYNEVASLFLRDADTAIRQLFHFRESGQRDTA
TFSSGALFVFFVPYAIMGCLTYGIAVPSGLFVPSLLSGAAFG
back to top

mRNA from alignment at H-elongata_contig127350:1264..1691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127350.2027.1 ID=mRNA_H-elongata_contig127350.2027.1|Name=mRNA_H-elongata_contig127350.2027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=428bp|location=Sequence derived from alignment at H-elongata_contig127350:1264..1691- (Himanthalia elongata Himel1 dioecious)
CAGGAGAGGGACCTCGTGGACGAGCTGGTGGCTTTCAATTGTGACCCTAA
TACCCAGTACAACGAGGTCGCTAGCCTGTTCCTCCGGGACGCCGATACCG
CTATCCGACAGGTGCACGGCAAGGCTCTATAATTTTGGCAGTTTTTTTAT
TCTAATTACAGTATGTTTCATGTCCAGGTACTTTGCGCGCTGGTTCTGCT
GCTGACAATCCCTCTCTATATATATATAATGTATAATGTTATCTCCTTGG
CGACAACGCGCAGTTGTTCCATTTCCGAGAATCGGGGCAGCGCGACACGG
CGACGTTTTCTTCCGGAGCGCTTTTCGTGTTCTTCGTGCCCTACGCCATC
ATGGGCTGCCTCACCTACGGTATCGCGGTGCCCAGCGGGCTCTTCGTGCC
CTCGCTCCTCTCCGGCGCTGCCTTCGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127350:1264..1691-

>mRNA_H-elongata_contig127350.2027.1 ID=mRNA_H-elongata_contig127350.2027.1|Name=mRNA_H-elongata_contig127350.2027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig127350:1264..1691- (Himanthalia elongata Himel1 dioecious)
CAGGAGAGGGACCTCGTGGACGAGCTGGTGGCTTTCAATTGTGACCCTAA
TACCCAGTACAACGAGGTCGCTAGCCTGTTCCTCCGGGACGCCGATACCG
CTATCCGACAGCAGGAGAGGGACCTCGTGGACGAGCTGGTGGCTTTCAAT
TGTGACCCTAATACCCAGTACAACGAGGTCGCTAGCCTGTTCCTCCGGGA
CGCCGATACCGCTATCCGACAGTTGTTCCATTTCCGAGAATCGGGGCAGC
GCGACACGGCGACGTTTTCTTCCGGAGCGCTTTTCGTGTTCTTCGTGCCC
TACGCCATCATGGGCTGCCTCACCTACGGTATCGCGGTGCCCAGCGGGCT
CTTCGTGCCCTCGCTCCTCTCCGGCGCTGCCTTCGGTTTGTTCCATTTCC
GAGAATCGGGGCAGCGCGACACGGCGACGTTTTCTTCCGGAGCGCTTTTC
GTGTTCTTCGTGCCCTACGCCATCATGGGCTGCCTCACCTACGGTATCGC
GGTGCCCAGCGGGCTCTTCGTGCCCTCGCTCCTCTCCGGCGCTGCCTTCG
GT
back to top