mRNA_H-elongata_contig127183.2018.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127183.2018.1
Unique NamemRNA_H-elongata_contig127183.2018.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.130e-19
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            VVEEIFGDSIHREVVGRS+KLL+FLSSMEDALTT+HLDLIWSSCV
Sbjct:  472 VVEEIFGDSIHREVVGRSAKLLQFLSSMEDALTTEHLDLIWSSCV 516
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BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: A0A8K1CH08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH08_PYTOL)

HSP 1 Score: 53.9 bits (128), Expect = 3.560e-7
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            +++ IFGD IHREVV RS  L++FL+   D LTT+ LD IW+SC+
Sbjct:  447 ILDAIFGDKIHREVVSRSLVLIKFLAE-SDKLTTEDLDTIWASCL 490
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BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: A0A5D6XIP1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIP1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.880e-7
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            V+EE+FGD IHRE+V RS+ L++FL+   + L+  +LD+IW SC+
Sbjct:  477 VIEEVFGDRIHREIVSRSALLVKFLAET-NKLSAHYLDVIWQSCI 520
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BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: A0A3R7FZP1_9STRA (USP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FZP1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.120e-7
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            ++EEIFGD IHRE+V RS+ L++FL+   + L T  +D+IW SC+
Sbjct:  415 IIEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTRSIDVIWKSCI 458
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BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: A0A3F2RUL0_9STRA (USP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUL0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.120e-7
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            ++EEIFGD IHRE+V RS+ L++FL+   + L T  +D+IW SC+
Sbjct:  418 IIEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTRSIDVIWKSCI 461
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BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: H3HBU9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBU9_PHYRM)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            ++EEIFGD IHRE+V RS+ L++FL+   + L T  +D+IW SC+
Sbjct:  439 ILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCI 482
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BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: A0A0W8DNQ4_PHYNI (ER membrane protein complex subunit 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNQ4_PHYNI)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            ++EEIFGD IHRE+V RS+ L++FL+   + L T  +D+IW SC+
Sbjct:  389 ILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCI 432
[Close]
BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: A0A662X9W0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9W0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            ++EEIFGD IHRE+V RS+ L++FL+   + L T  +D+IW SC+
Sbjct:  447 IIEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHCIDVIWQSCI 490
[Close]
BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: A0A3M6VMM8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMM8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            ++EEIFGD IHRE+V RS+ L++FL+   + L T  +D+IW SC+
Sbjct:  313 ILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCI 356
[Close]
BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Match: D0MTA4_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTA4_PHYIT)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV 135
            ++EEIFGD IHRE+V RS+ L++FL+   + L T  +D+IW SC+
Sbjct:  443 ILEEIFGDRIHREIVSRSALLVKFLAD-SNKLDTHSIDVIWQSCI 486
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127183.2018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KKZ1_9PHAE4.130e-1993.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A8K1CH08_PYTOL3.560e-755.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XIP1_9STRA4.880e-751.11Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3R7FZP1_9STRA9.120e-751.11USP domain-containing protein n=2 Tax=Phytophthora... [more]
A0A3F2RUL0_9STRA9.120e-751.11USP domain-containing protein n=2 Tax=Phytophthora... [more]
H3HBU9_PHYRM1.250e-651.11Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0W8DNQ4_PHYNI1.250e-651.11ER membrane protein complex subunit 1 n=1 Tax=Phyt... [more]
A0A662X9W0_9STRA1.250e-651.11Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A3M6VMM8_9STRA1.250e-651.11Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
D0MTA4_PHYIT1.250e-651.11Ubiquitin-specific protease, putative n=2 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127183contigH-elongata_contig127183:1282..1416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.6839488-CDS-H-elongata_contig127183:1281..14161622929754.6839488-CDS-H-elongata_contig127183:1281..1416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127183 1282..1416 +
1691679145.0976238-CDS-H-elongata_contig127183:1281..14161691679145.0976238-CDS-H-elongata_contig127183:1281..1416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127183 1282..1416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127183.2018.1prot_H-elongata_contig127183.2018.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127183 1282..1416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127183.2018.1

>prot_H-elongata_contig127183.2018.1 ID=prot_H-elongata_contig127183.2018.1|Name=mRNA_H-elongata_contig127183.2018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
VVEEIFGDSIHREVVGRSSKLLRFLSSMEDALTTDHLDLIWSSCV
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mRNA from alignment at H-elongata_contig127183:1282..1416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127183.2018.1 ID=mRNA_H-elongata_contig127183.2018.1|Name=mRNA_H-elongata_contig127183.2018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig127183:1282..1416+ (Himanthalia elongata Himel1 dioecious)
GTGGTGGAAGAAATATTCGGCGACAGCATCCACAGGGAGGTCGTCGGCAG
GTCTTCCAAGCTGCTGCGCTTTCTGAGTAGCATGGAAGACGCTCTCACCA
CGGACCACCTTGACCTCATATGGAGCTCCTGCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig127183:1282..1416+

>mRNA_H-elongata_contig127183.2018.1 ID=mRNA_H-elongata_contig127183.2018.1|Name=mRNA_H-elongata_contig127183.2018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig127183:1282..1416+ (Himanthalia elongata Himel1 dioecious)
GTGGTGGAAGAAATATTCGGCGACAGCATCCACAGGGAGGTCGTCGGCAG
GTCTTCCAAGCTGCTGCGCTTTCTGAGTAGCATGGAAGACGCTCTCACCA
CGGACCACCTTGACCTCATATGGAGCTCCTGCGTCGTGGTGGAAGAAATA
TTCGGCGACAGCATCCACAGGGAGGTCGTCGGCAGGTCTTCCAAGCTGCT
GCGCTTTCTGAGTAGCATGGAAGACGCTCTCACCACGGACCACCTTGACC
TCATATGGAGCTCCTGCGTC
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