mRNA_H-elongata_contig127174.2017.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127174.2017.1
Unique NamemRNA_H-elongata_contig127174.2017.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 6.420e-46
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1 
Query:   10 RGQSMDCGRVHIFTSYFFTKLTETKLQNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLACLTNLDKLEAGKGGGDYGPDEERPCILFLDSLGMHQPTRIYEYLRR 339
            +G SMD G VH+FTS+FFTKLTE+K+ +F  AY  V+HWTRNVDLF KKFV VPVVE+MHWSLACL NLDKLE  K   DY  DE +PC+LFLDSL MH  +RIY+YLRR
Sbjct:  392 KGGSMDDGNVHVFTSHFFTKLTESKIYDFDAAYSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLDKLEVDKEAADYQSDEAQPCMLFLDSLDMHYASRIYDYLRR 501
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.440e-44
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:   10 RGQSMDCGRVHIFTSYFFTKLTETKLQNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLACLTNLDKLEAGKGGGDYGPDEERPCILFLDSLGMHQPTRIYEYLRR 339
            +G SMD G+VH+FTS+FFTKLTE+++ +F  AY  V+HWTR+VDLF KKFV VPVVE++HWSLACL NLDKLE  K   DY  DE +PC+LFLDSL MH  +RIY+YLRR
Sbjct:  694 KGGSMDDGKVHVFTSHFFTKLTESEIYDFDAAYSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLDKLEVDKEAADYQSDEAQPCMLFLDSLDMHYASRIYDYLRR 803
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: D7FWD8_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.970e-22
Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   22 MDCGRVHIFTSYFFTKLTETKLQNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLACLTNLDKLEA-----GKGGGDYGPD 261
            MD  +VHIF+S FFTKL E  +  F  AY GVK W+R+VDLFS KFV VPVVE+ HW LACL NL+KLEA     G+G   + PD
Sbjct:  234 MDETKVHIFSSSFFTKLVEKDIDEFNAAYGGVKRWSRHVDLFSMKFVMVPVVEDEHWRLACLCNLNKLEAKWKDTGRGDLVFDPD 318
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: A0A7S3JWX9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWX9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.040e-19
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:   34 RVHIFTSYFFTKLTETKL--QNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLA-----------CLTNL-----------DKLEAGKGGGDYGPDEERPCILFLDSLGMHQPTRIYEYLR 336
            +VH+F+S+FFTKLTE K+  + F  A++ V+ WTR +D+F  KF+ VPVV+ +HWSLA           C T++           D ++      D   D E+PC++F+DSL MH+   +++ ++
Sbjct:  149 QVHVFSSHFFTKLTEIKITTRTFQEAHKRVERWTRRLDIFKLKFIMVPVVQQLHWSLAVICHPDRIVDMCETHINHVKKKGTTADDAVDIDVDDEDEEIDPEQPCVVFMDSLKMHKENEVFKAIK 273
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: A0A7S3JWU2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWU2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.270e-19
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:   34 RVHIFTSYFFTKLTETKL--QNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLA-----------CLTNL-----------DKLEAGKGGGDYGPDEERPCILFLDSLGMHQPTRIYEYLR 336
            +VH+F+S+FFTKLTE K+  + F  A++ V+ WTR +D+F  KF+ VPVV+ +HWSLA           C T++           D ++      D   D E+PC++F+DSL MH+   +++ ++
Sbjct:  349 QVHVFSSHFFTKLTEIKITTRTFQEAHKRVERWTRRLDIFKLKFIMVPVVQQLHWSLAVICHPDRIVDMCETHINHVKKKGTTADDAVDIDVDDEDEEIDPEQPCVVFMDSLKMHKENEVFKAIK 473
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: K0RDN9_THAOC (ULP_PROTEASE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RDN9_THAOC)

HSP 1 Score: 84.3 bits (207), Expect = 1.180e-16
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 1 
Query:    4 VDRGQSMDCGRVHIFTSYFFTKLTETKLQNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLACLTNLDKLEAGKGGGDYGPDEERPCILFLDSLGMHQPTRIYEYL 333
            + RG++     VH FTS+F T L +   +        V  WT N D+F KKFVFVP+ +++HWSL  + N  ++ A     D   + E PC+LFLDSL MH   +I + L
Sbjct:  756 ISRGENPQDSSVHFFTSHFMTTLRDDGPE-------AVASWTANKDIFKKKFVFVPINKDLHWSLCVIVNPGEI-ASVYDEDVSSECEHPCLLFLDSLKMHNKNQIRKTL 857
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: A0A2V3J0H8_9FLOR (Ubiquitin-like-specific protease 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0H8_9FLOR)

HSP 1 Score: 82.0 bits (201), Expect = 7.530e-16
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:   46 FTSYFFTKLTETKLQNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLACLTNLDKLEA-----GKGGGDYGPDEERPCILFLDSLGMHQPTRIYEYLRR 339
            F+S+FF +L  TK     + Y GVK WT+NVDLF+ KFVFVP+ E+ HWSL  + NLDKL+       K    Y    E P I++LDSL   + +     +RR
Sbjct:  408 FSSFFFGRLRRTK----PIDYEGVKSWTKNVDLFANKFVFVPICESYHWSLIIVANLDKLDRWLERDAKDMTVY----ETPRIIYLDSLDPSRGSSFGNTIRR 502
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: A0A197JRI9_9FUNG (Cysteine proteinase n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JRI9_9FUNG)

HSP 1 Score: 78.2 bits (191), Expect = 9.590e-16
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:   34 RVHIFTSYFFTKLTETKLQNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLACLTNLDKLEAGKGGGDYGPDEERPCILFLDSLGMHQPTRIYEYLR 336
            +V+IF ++F+ +L    ++  T +Y  +K+WT  VD+FSKK++ VP+ EN+HW L  + N   L             E+P IL LDSLG   PT +++ LR
Sbjct:   11 QVYIFNTFFYQRLLSKPVKGATSSYNSIKNWTAKVDIFSKKYIIVPIHENLHWYLVVIVNPGLLL------QMAETIEQPYILCLDSLGGTHPT-VFKVLR 104
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: A0A7S3ZZX5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZX5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.110e-15
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:   37 VHIFTSYFFTKLTET----KL----QNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLACLTNLDKLEAGKGGG-----DYGPDEE---------RPCILFLDSLGMHQPTRIYEYLR 336
            VH F+S+FFTKL E     KL    +    A+  V+ WTR VD+F+KKF+ VPVVE++HWSLA + +  +L            D G  E+         RPC++ +DSL MH   +I ++LR
Sbjct:  100 VHAFSSHFFTKLREGDSRGKLKPDSEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVARERRELDVGATEDEXXXXDCPARPCVIHMDSLRMHSAKKIEKWLR 221
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BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Match: A0A168NYH9_ABSGL (ULP_PROTEASE domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168NYH9_ABSGL)

HSP 1 Score: 78.6 bits (192), Expect = 1.180e-14
Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:   25 DCGRVHIFTSYFFTKLTETKLQNFTLAYRGVKHWTRNVDLFSKKFVFVPVVENMHWSLACLTNLDK-LEAGKGGGDYGPDEERPCILFLDSLGMHQPT 315
            D    HIF+S+F+ +LT+    +  + Y  V+ WT ++DLFSKK+   P+ E  HW L  + N+DK + +  G  D     +RP +  LDSLG    T
Sbjct:  391 DTKNTHIFSSFFYNRLTQGMASSGQVQYENVRKWTTDIDLFSKKYAIFPINEKWHWYLVLVCNIDKCVPSETGAADPLNTRDRPIMFVLDSLGGTSKT 488
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127174.2017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN6_ECTSI6.420e-4669.09ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KTD8_9PHAE1.440e-4466.36ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FWD8_ECTSI2.970e-2258.82SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
A0A7S3JWX9_9STRA2.040e-1936.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3JWU2_9STRA2.270e-1936.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
K0RDN9_THAOC1.180e-1639.09ULP_PROTEASE domain-containing protein n=1 Tax=Tha... [more]
A0A2V3J0H8_9FLOR7.530e-1643.69Ubiquitin-like-specific protease 2 n=1 Tax=Gracila... [more]
A0A197JRI9_9FUNG9.590e-1637.62Cysteine proteinase n=1 Tax=Linnemannia elongata A... [more]
A0A7S3ZZX5_9STRA1.110e-1539.34Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A168NYH9_ABSGL1.180e-1436.73ULP_PROTEASE domain-containing protein n=1 Tax=Abs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127174contigH-elongata_contig127174:334..1759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue6e-39
Seed eggNOG ortholog2880.D8LDN6
KEGG koko:K08596
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
Ec32 ortholog descriptionPeptidase C48, SUMO/Sentrin/Ubl1
Ec32 orthologEc-19_001350.1
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size342
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127174.2017.1prot_H-elongata_contig127174.2017.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127174 334..1759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.6125965-CDS-H-elongata_contig127174:333..4471622929754.6125965-CDS-H-elongata_contig127174:333..447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127174 334..447 -
1691679145.0666451-CDS-H-elongata_contig127174:333..4471691679145.0666451-CDS-H-elongata_contig127174:333..447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127174 334..447 -
1622929754.6294003-CDS-H-elongata_contig127174:912..10411622929754.6294003-CDS-H-elongata_contig127174:912..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127174 913..1041 -
1691679145.0798726-CDS-H-elongata_contig127174:912..10411691679145.0798726-CDS-H-elongata_contig127174:912..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127174 913..1041 -
1622929754.6434746-CDS-H-elongata_contig127174:1660..17591622929754.6434746-CDS-H-elongata_contig127174:1660..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127174 1661..1759 -
1691679145.0883398-CDS-H-elongata_contig127174:1660..17591691679145.0883398-CDS-H-elongata_contig127174:1660..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127174 1661..1759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127174.2017.1

>prot_H-elongata_contig127174.2017.1 ID=prot_H-elongata_contig127174.2017.1|Name=mRNA_H-elongata_contig127174.2017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MVDRGQSMDCGRVHIFTSYFFTKLTETKLQNFTLAYRGVKHWTRNVDLFS
KKFVFVPVVENMHWSLACLTNLDKLEAGKGGGDYGPDEERPCILFLDSLG
MHQPTRIYEYLRR*
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mRNA from alignment at H-elongata_contig127174:334..1759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127174.2017.1 ID=mRNA_H-elongata_contig127174.2017.1|Name=mRNA_H-elongata_contig127174.2017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1426bp|location=Sequence derived from alignment at H-elongata_contig127174:334..1759- (Himanthalia elongata Himel1 dioecious)
ATGGTGGACCGGGGGCAAAGTATGGACTGCGGAAGGGTGCACATATTCAC
GTCGTACTTCTTCACGAAGCTCACGGAGACCAAGCTCCAAAACTTCACCG
TGAGCCTATAATAACCATGTTTTTCAGGCGATGAGGTAGAGGCTAACCCT
CAAGATTAGATTTCATGGCAAACCAAAACGCCCCCCAAACACGCTTTCGG
TACACGGTGCATGCAGTGTTGATGCCTGTCCCCTCCGCCCCTATTCTTTC
TTCTTATTTCATTTTTTTTTTTTTGTTTCTTGAAACCTAGCTGGACTCTT
CCATTTCGTTTCACTAAAACTGTACGATATTTTCTTTTTTCAAACCTGTT
TTCTGACTTCTTGATATTTTCCTTTATTTTTTCCTCTTCTATTCAAGCCT
CTTTTTTCACCTTATTTTTCTTTATACTACCAATCCAAATATGGGGGGCT
GTTACTTAAGTGTCCCCGGCTTGTGGAGGGGAGGGTCTACATGTATTCTT
TTCCAGACCCATTCGTTGAATCCTCGGTCGTAGCGTTTCATGTGGGACAA
ACGATAACGATATCACAGGGGATTAATAACTCTTGTCCCCGGAAGGGGGA
TGAATTTAATCCGTCCCCTCCCCAAATCAGGGACGTTTAAGAACCCCCCT
CCCATTGTGTTATTGGTCAAGCTAACATTTCGCTCCTTTTCTCGCTCTGT
TGGGTGGGGGGGGGGCAGTTGGCGTATAGAGGGGTGAAGCACTGGACGCG
CAACGTTGACCTCTTCTCCAAGAAATTCGTGTTCGTCCCGGTCGTGGAGA
ACATGCACTGGAGCCTCGCGTGCCTCACCAACCTCGACAAACTTGAGGTC
AGACGGAAATAACCTCTCTCCTCCCCCCAAAAGCAAAAACAAATGAGGTA
GTATGCCGCAGCCGCAGCCACTGTCCCCCATCCCCTCTTCCCCATTCCCA
GGAGTTCCAGGTTTTAGCAGATATTACTGAAGGCGAGTTTAGAAAGCGTG
GGGCTGATGAGGCAATTTTTGACAGAGGGGTGAGGAAACGGGAGAGAGAG
ACGACCCGACATCGTTTGCGATCGTGATAGCATTTCGAAAAGGAAGGTAA
AAAACATGGAATAGTATGGGATCATTTGCGATTAGAATCACTTACCTCGA
GATGCGAAGGTAGATGGTGTCATCTGGTTGGCCCTGGTTAGCCCTGTTGG
GTCGAGCACGACGACACGAGGACCACTTGTTTTCTTGTGTGTTAAACTAG
CGCAATCCGCGTGCCCGCTAATCACCGCGGCGCCGTTCGTCGTCCCCGGT
TTTCCGTTATAGGCAGGAAAGGGTGGGGGTGACTACGGCCCCGACGAGGA
ACGTCCGTGCATACTCTTCCTCGACTCGCTGGGGATGCATCAACCCACCA
GGATCTACGAGTACCTGCGCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig127174:334..1759-

>mRNA_H-elongata_contig127174.2017.1 ID=mRNA_H-elongata_contig127174.2017.1|Name=mRNA_H-elongata_contig127174.2017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig127174:334..1759- (Himanthalia elongata Himel1 dioecious)
ATGGTGGACCGGGGGCAAAGTATGGACTGCGGAAGGGTGCACATATTCAC
GTCGTACTTCTTCACGAAGCTCACGGAGACCAAGCTCCAAAACTTCACCA
TGGTGGACCGGGGGCAAAGTATGGACTGCGGAAGGGTGCACATATTCACG
TCGTACTTCTTCACGAAGCTCACGGAGACCAAGCTCCAAAACTTCACCTT
GGCGTATAGAGGGGTGAAGCACTGGACGCGCAACGTTGACCTCTTCTCCA
AGAAATTCGTGTTCGTCCCGGTCGTGGAGAACATGCACTGGAGCCTCGCG
TGCCTCACCAACCTCGACAAACTTGAGTTGGCGTATAGAGGGGTGAAGCA
CTGGACGCGCAACGTTGACCTCTTCTCCAAGAAATTCGTGTTCGTCCCGG
TCGTGGAGAACATGCACTGGAGCCTCGCGTGCCTCACCAACCTCGACAAA
CTTGAGGCAGGAAAGGGTGGGGGTGACTACGGCCCCGACGAGGAACGTCC
GTGCATACTCTTCCTCGACTCGCTGGGGATGCATCAACCCACCAGGATCT
ACGAGTACCTGCGCAGGTGAGCAGGAAAGGGTGGGGGTGACTACGGCCCC
GACGAGGAACGTCCGTGCATACTCTTCCTCGACTCGCTGGGGATGCATCA
ACCCACCAGGATCTACGAGTACCTGCGCAGGTGA
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