mRNA_H-elongata_contig12713.2015.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12713.2015.1
Unique NamemRNA_H-elongata_contig12713.2015.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12713.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12713contigH-elongata_contig12713:2377..3363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size987
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12713.2015.1prot_H-elongata_contig12713.2015.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12713 2410..3189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.2669828-UTR-H-elongata_contig12713:2376..24091622929754.2669828-UTR-H-elongata_contig12713:2376..2409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12713 2377..2409 +
1691679144.9014864-UTR-H-elongata_contig12713:2376..24091691679144.9014864-UTR-H-elongata_contig12713:2376..2409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12713 2377..2409 +
1622929754.2944784-UTR-H-elongata_contig12713:3189..33631622929754.2944784-UTR-H-elongata_contig12713:3189..3363Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12713 3190..3363 +
1691679144.9160476-UTR-H-elongata_contig12713:3189..33631691679144.9160476-UTR-H-elongata_contig12713:3189..3363Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12713 3190..3363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.2810442-CDS-H-elongata_contig12713:2409..31891622929754.2810442-CDS-H-elongata_contig12713:2409..3189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12713 2410..3189 +
1691679144.9087675-CDS-H-elongata_contig12713:2409..31891691679144.9087675-CDS-H-elongata_contig12713:2409..3189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12713 2410..3189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12713.2015.1

>prot_H-elongata_contig12713.2015.1 ID=prot_H-elongata_contig12713.2015.1|Name=mRNA_H-elongata_contig12713.2015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
MVDVVNKKCSTNGCFKHPSNGVTGSKKVDDCAVHVLEGMIDIVSKTCSST
GCSKHPSYGVDGRNKAEFCAEHALEGSINVTSKVCAGDGCSKHPRDGVAG
SKKAEYCSVHSLEGMIDVHSKMCAKDGYCKQPSYGVTSSKKPEYCAVHAL
EGMEKLHKGCACDGCIKRHRYGVAENKKPEYCALYPLEGMIDDAIKKCDG
DISAAPNQARARKRISKTAAREVSVLERESTTKSKRPFYNAASDSEKVKI
ELSLSLSSI*
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mRNA from alignment at H-elongata_contig12713:2377..3363+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12713.2015.1 ID=mRNA_H-elongata_contig12713.2015.1|Name=mRNA_H-elongata_contig12713.2015.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=987bp|location=Sequence derived from alignment at H-elongata_contig12713:2377..3363+ (Himanthalia elongata Himel1 dioecious)
CCGGAATATTGCGCGGTGCATGCTATAGAAGGGATGGTCGACGTTGTGAA
CAAAAAGTGTTCTACTAATGGATGCTTTAAGCATCCTAGTAATGGCGTAA
CTGGCAGCAAAAAAGTGGATGACTGCGCGGTGCATGTTCTTGAAGGAATG
ATCGACATTGTGAGCAAAACGTGTTCTAGTACTGGATGCTCTAAGCATCC
GAGTTATGGCGTGGACGGCAGGAACAAAGCGGAATTTTGCGCGGAGCATG
CTTTAGAGGGGTCGATCAACGTTACGAGCAAAGTGTGTGCTGGTGATGGA
TGCTCTAAGCATCCGAGGGATGGCGTGGCTGGCAGCAAAAAAGCGGAATA
CTGCTCGGTGCATTCCTTAGAAGGGATGATCGACGTTCATAGCAAGATGT
GTGCTAAGGATGGATACTGCAAGCAACCGAGTTATGGCGTGACAAGCAGC
AAAAAGCCGGAGTACTGCGCGGTGCATGCTTTGGAAGGGATGGAAAAACT
TCACAAGGGGTGTGCTTGTGATGGATGCATTAAGCGTCACAGGTATGGCG
TGGCCGAGAACAAGAAACCGGAGTACTGCGCGCTGTATCCTTTGGAAGGG
ATGATCGACGATGCTATCAAGAAGTGCGATGGTGATATTTCTGCTGCACC
AAACCAGGCTAGGGCCAGAAAGAGAATATCCAAGACTGCTGCACGAGAAG
TATCTGTTTTAGAGAGAGAAAGTACGACTAAGTCTAAACGCCCCTTTTAT
AACGCAGCATCAGATTCAGAGAAAGTAAAAATTGAGTTGTCCCTATCTCT
ATCTAGTATATAACTTCTTCGAAGTTAAAGGTTACAAATAATCTACTGGA
GAACATACAGGGTTTTACTCCGGGGCTACCATACATTCAAAGTTGTTTTA
ATTAACATGTTCCAACGAGCAGTGGTGAGGGAGGGTTGTTTGTTTGTTTG
ATCTGGTAAAAAATTAATTTATGTTTTTGAAACGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig12713:2377..3363+

>mRNA_H-elongata_contig12713.2015.1 ID=mRNA_H-elongata_contig12713.2015.1|Name=mRNA_H-elongata_contig12713.2015.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig12713:2377..3363+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGACGTTGTGAACAAAAAGTGTTCTACTAATGGATGCTTTAAGCA
TCCTAGTAATGGCGTAACTGGCAGCAAAAAAGTGGATGACTGCGCGGTGC
ATGTTCTTGAAGGAATGATCGACATTGTGAGCAAAACGTGTTCTAGTACT
GGATGCTCTAAGCATCCGAGTTATGGCGTGGACGGCAGGAACAAAGCGGA
ATTTTGCGCGGAGCATGCTTTAGAGGGGTCGATCAACGTTACGAGCAAAG
TGTGTGCTGGTGATGGATGCTCTAAGCATCCGAGGGATGGCGTGGCTGGC
AGCAAAAAAGCGGAATACTGCTCGGTGCATTCCTTAGAAGGGATGATCGA
CGTTCATAGCAAGATGTGTGCTAAGGATGGATACTGCAAGCAACCGAGTT
ATGGCGTGACAAGCAGCAAAAAGCCGGAGTACTGCGCGGTGCATGCTTTG
GAAGGGATGGAAAAACTTCACAAGGGGTGTGCTTGTGATGGATGCATTAA
GCGTCACAGGTATGGCGTGGCCGAGAACAAGAAACCGGAGTACTGCGCGC
TGTATCCTTTGGAAGGGATGATCGACGATGCTATCAAGAAGTGCGATGGT
GATATTTCTGCTGCACCAAACCAGGCTAGGGCCAGAAAGAGAATATCCAA
GACTGCTGCACGAGAAGTATCTGTTTTAGAGAGAGAAAGTACGACTAAGT
CTAAACGCCCCTTTTATAACGCAGCATCAGATTCAGAGAAAGTAAAAATT
GAGTTGTCCCTATCTCTATCTAGTATATAAATGGTCGACGTTGTGAACAA
AAAGTGTTCTACTAATGGATGCTTTAAGCATCCTAGTAATGGCGTAACTG
GCAGCAAAAAAGTGGATGACTGCGCGGTGCATGTTCTTGAAGGAATGATC
GACATTGTGAGCAAAACGTGTTCTAGTACTGGATGCTCTAAGCATCCGAG
TTATGGCGTGGACGGCAGGAACAAAGCGGAATTTTGCGCGGAGCATGCTT
TAGAGGGGTCGATCAACGTTACGAGCAAAGTGTGTGCTGGTGATGGATGC
TCTAAGCATCCGAGGGATGGCGTGGCTGGCAGCAAAAAAGCGGAATACTG
CTCGGTGCATTCCTTAGAAGGGATGATCGACGTTCATAGCAAGATGTGTG
CTAAGGATGGATACTGCAAGCAACCGAGTTATGGCGTGACAAGCAGCAAA
AAGCCGGAGTACTGCGCGGTGCATGCTTTGGAAGGGATGGAAAAACTTCA
CAAGGGGTGTGCTTGTGATGGATGCATTAAGCGTCACAGGTATGGCGTGG
CCGAGAACAAGAAACCGGAGTACTGCGCGCTGTATCCTTTGGAAGGGATG
ATCGACGATGCTATCAAGAAGTGCGATGGTGATATTTCTGCTGCACCAAA
CCAGGCTAGGGCCAGAAAGAGAATATCCAAGACTGCTGCACGAGAAGTAT
CTGTTTTAGAGAGAGAAAGTACGACTAAGTCTAAACGCCCCTTTTATAAC
GCAGCATCAGATTCAGAGAAAGTAAAAATTGAGTTGTCCCTATCTCTATC
TAGTATATAA
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